Wall clock time and date at job start Mon Mar 30 2020 07:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.05749 * 2 1 4 4 C 1.54268 * 110.02959 * 238.58513 * 2 1 3 5 5 C 1.54889 * 104.19728 * 217.10559 * 4 2 1 6 6 C 1.54897 * 102.74591 * 37.94393 * 5 4 2 7 7 C 1.53873 * 110.03141 * 121.42285 * 2 1 3 8 8 H 1.09005 * 110.03108 * 238.56141 * 7 2 1 9 9 N 1.46497 * 110.03188 * 359.97438 * 7 2 1 10 10 C 1.39674 * 119.99703 * 203.62209 * 9 7 2 11 11 C 1.38911 * 120.07863 * 359.72347 * 10 9 7 12 12 C 1.38105 * 119.92704 * 179.76837 * 11 10 9 13 13 C 1.38289 * 120.07066 * 0.51144 * 12 11 10 14 14 C 1.50707 * 119.92416 * 179.72338 * 13 12 11 15 15 C 1.50701 * 109.47057 * 270.02229 * 14 13 12 16 16 H 1.08007 * 119.99812 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99774 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00195 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99716 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47207 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47464 * 119.99444 * 19 17 15 22 22 H 1.48503 * 109.46948 * 239.99387 * 19 17 15 23 23 C 1.38281 * 120.15361 * 359.74291 * 13 12 11 24 24 C 1.38109 * 120.07116 * 0.02562 * 23 13 12 25 25 H 1.08994 * 109.47166 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46842 * 299.96159 * 1 2 3 27 27 H 1.09000 * 109.47019 * 59.95862 * 1 2 3 28 28 H 1.08998 * 110.48695 * 98.42817 * 4 2 1 29 29 H 1.08999 * 110.48827 * 335.78376 * 4 2 1 30 30 H 1.09000 * 110.75622 * 279.63120 * 5 4 2 31 31 H 1.09002 * 110.76161 * 156.25634 * 5 4 2 32 32 H 1.08998 * 110.48266 * 80.73866 * 6 5 4 33 33 H 1.09000 * 110.48216 * 203.37721 * 6 5 4 34 34 H 0.96994 * 120.00209 * 23.62346 * 9 7 2 35 35 H 1.07994 * 120.03479 * 0.02562 * 11 10 9 36 36 H 1.07993 * 119.96850 * 180.25833 * 12 11 10 37 37 H 1.09006 * 109.46929 * 30.01997 * 14 13 12 38 38 H 1.08998 * 109.47171 * 150.01930 * 14 13 12 39 39 H 0.97006 * 119.99813 * 180.02562 * 18 17 15 40 40 H 1.07997 * 119.96481 * 179.97438 * 23 13 12 41 41 H 1.08003 * 120.03506 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3136 -1.5008 -0.7193 6 6 2.8874 -1.9408 0.7034 7 6 2.0571 -0.7537 1.2336 8 1 2.6868 -0.0956 1.8324 9 7 0.9359 -1.2447 2.0386 10 6 1.1150 -1.5075 3.3986 11 6 2.3570 -1.3093 3.9884 12 6 2.5294 -1.5655 5.3344 13 6 1.4699 -2.0291 6.0928 14 6 1.6633 -2.3136 7.5601 15 6 2.0936 -3.7464 7.7415 16 1 2.2145 -4.3871 6.8804 17 6 2.3319 -4.2396 9.0067 18 7 2.1842 -3.4597 10.0552 19 14 2.8660 -6.0155 9.2315 20 1 2.9586 -6.6763 7.9049 21 1 4.1929 -6.0530 9.8972 22 1 1.8706 -6.7292 10.0712 23 6 0.2335 -2.2326 5.5078 24 6 0.0531 -1.9737 4.1632 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5133 0.8904 27 1 -0.3633 0.5145 -0.8896 28 1 2.3297 -0.0536 -2.0255 29 1 1.3142 -1.4659 -1.5967 30 1 4.1710 -0.8291 -0.6753 31 1 3.5325 -2.3679 -1.3424 32 1 2.2771 -2.8427 0.6569 33 1 3.7637 -2.1039 1.3307 34 1 0.0692 -1.3874 1.6271 35 1 3.1858 -0.9512 3.3958 36 1 3.4935 -1.4076 5.7945 37 1 2.4301 -1.6504 7.9607 38 1 0.7253 -2.1461 8.0894 39 1 2.3523 -3.8067 10.9453 40 1 -0.5916 -2.5950 6.1028 41 1 -0.9129 -2.1325 3.7071 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903297965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:43 Heat of formation + Delta-G solvation = 6.905434 kcal Electronic energy + Delta-G solvation = -18835.749731 eV Core-core repulsion = 16100.257596 eV Total energy + Delta-G solvation = -2735.492134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.66777 -38.09634 -34.51638 -32.78423 -31.57097 -30.32565 -29.93287 -27.62291 -25.73275 -25.27169 -22.79686 -22.02197 -20.91759 -20.17317 -18.97654 -17.39172 -16.21459 -15.92283 -15.47740 -14.88982 -14.49671 -14.09736 -13.80931 -13.77449 -13.29440 -12.86754 -12.61726 -12.56783 -12.41063 -12.17974 -11.77814 -11.23763 -11.19976 -11.12540 -11.02580 -10.94981 -10.85111 -10.70751 -10.59047 -10.46589 -10.01932 -9.66672 -9.37124 -8.93406 -8.34725 -8.16702 -6.67838 -5.94225 -3.98690 2.19122 2.44187 3.33853 3.41239 3.46929 3.72844 4.32879 4.41842 4.48521 4.63731 4.74938 5.06217 5.18741 5.25746 5.27176 5.32794 5.38322 5.47352 5.56791 5.64193 5.64837 5.66429 5.74245 5.87031 5.92925 6.00655 6.10337 6.13970 6.18039 6.26764 6.39641 6.56061 6.78459 6.94059 7.36545 7.37111 7.52960 7.67380 7.94268 8.01307 8.03503 8.15106 8.45258 9.07564 9.64688 11.13935 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035025 B = 0.003869 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.229281 B = 7235.173547 C = 7608.688557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 H 0.077 0.923 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.140 4.140 7 C 0.155 3.845 8 H 0.078 0.922 9 N -0.752 5.752 10 C 0.182 3.818 11 C -0.195 4.195 12 C -0.081 4.081 13 C -0.086 4.086 14 C 0.053 3.947 15 C -0.506 4.506 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.080 4.080 24 C -0.196 4.196 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.394 0.606 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.115 0.885 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 6.762 -21.516 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 H 0.095 0.905 4 C -0.157 4.157 5 C -0.163 4.163 6 C -0.179 4.179 7 C 0.049 3.951 8 H 0.096 0.904 9 N -0.387 5.387 10 C 0.083 3.917 11 C -0.218 4.218 12 C -0.100 4.100 13 C -0.088 4.088 14 C 0.016 3.984 15 C -0.545 4.545 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.099 4.099 24 C -0.218 4.218 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.232 0.768 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.246 6.829 -21.378 22.477 hybrid contribution 0.025 -1.119 0.094 1.123 sum -1.221 5.711 -21.284 22.070 Atomic orbital electron populations 1.21794 0.95056 1.01603 1.01992 1.21983 0.96177 0.99552 0.94493 0.90478 1.22442 0.97540 0.98893 0.96831 1.22464 0.97525 0.99874 0.96454 1.22928 1.00173 0.99025 0.95822 1.21403 0.88256 0.94303 0.91147 0.90398 1.44868 1.12453 1.75362 1.06013 1.17641 0.93996 0.96407 0.83670 1.20534 0.95654 1.09836 0.95735 1.20845 0.98637 0.97802 0.92671 1.20439 0.92266 0.97029 0.99019 1.18247 0.97627 0.96747 0.85780 1.21185 1.45167 0.95859 0.92267 0.92521 1.25020 0.95731 0.97695 0.96054 1.69973 1.49784 1.35583 0.98252 0.86525 0.78215 0.85099 0.78148 1.19721 1.21024 1.21032 1.20815 0.97504 0.98105 0.93433 1.20445 0.97357 1.09198 0.94791 0.92488 0.91875 0.92595 0.91760 0.91547 0.91477 0.91629 0.91081 0.91388 0.76796 0.87378 0.86768 0.95736 0.95737 0.93050 0.86700 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 7.72 37.16 0.29 -0.89 16 2 C -0.10 -0.88 3.50 -89.50 -0.31 -1.20 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -0.91 6.36 -25.07 -0.16 -1.07 16 5 C -0.13 -1.04 6.91 -24.73 -0.17 -1.21 16 6 C -0.14 -1.49 6.53 -25.07 -0.16 -1.65 16 7 C 0.16 1.69 2.87 -66.82 -0.19 1.50 16 8 H 0.08 0.91 6.53 -51.93 -0.34 0.57 16 9 N -0.75 -9.55 4.70 -51.09 -0.24 -9.79 16 10 C 0.18 3.00 6.65 -83.79 -0.56 2.44 16 11 C -0.20 -3.43 9.21 -39.38 -0.36 -3.79 16 12 C -0.08 -1.65 9.69 -39.61 -0.38 -2.04 16 13 C -0.09 -1.95 5.07 -104.58 -0.53 -2.48 16 14 C 0.05 1.41 5.10 -29.03 -0.15 1.26 16 15 C -0.51 -14.60 9.09 -34.44 -0.31 -14.91 16 16 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 C -0.08 -1.63 9.69 -39.61 -0.38 -2.01 16 24 C -0.20 -3.41 9.90 -39.38 -0.39 -3.80 16 25 H 0.06 0.45 6.85 -51.93 -0.36 0.10 16 26 H 0.06 0.56 7.78 -51.93 -0.40 0.16 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.83 8.05 -51.93 -0.42 0.42 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.39 4.44 5.76 -40.82 -0.23 4.21 16 35 H 0.11 1.66 6.26 -52.49 -0.33 1.33 16 36 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 41 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 326.93 15.07 4.93 4.93 Total: -1.00 -30.40 326.93 -10.15 -40.55 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.67 Total: 2.00 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -3.88 Total: -28.34 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.50 Total: -36.11 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.40 -10.15 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.454 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds