Wall clock time and date at job start Mon Mar 30 2020 07:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.05749 * 2 1 4 4 C 1.54268 * 110.02959 * 238.58513 * 2 1 3 5 5 C 1.54889 * 104.19728 * 217.10559 * 4 2 1 6 6 C 1.54897 * 102.74591 * 37.94393 * 5 4 2 7 7 C 1.53873 * 110.03141 * 121.42285 * 2 1 3 8 8 H 1.09005 * 110.03108 * 238.56141 * 7 2 1 9 9 N 1.46497 * 110.03188 * 359.97438 * 7 2 1 10 10 C 1.39674 * 119.99703 * 203.62209 * 9 7 2 11 11 C 1.38911 * 120.07863 * 359.72347 * 10 9 7 12 12 C 1.38105 * 119.92704 * 179.76837 * 11 10 9 13 13 C 1.38289 * 120.07066 * 0.51144 * 12 11 10 14 14 C 1.50707 * 119.92416 * 179.72338 * 13 12 11 15 15 C 1.50701 * 109.47057 * 270.02229 * 14 13 12 16 16 H 1.08007 * 119.99812 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99774 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00195 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99716 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47207 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47464 * 119.99444 * 19 17 15 22 22 H 1.48503 * 109.46948 * 239.99387 * 19 17 15 23 23 C 1.38281 * 120.15361 * 359.74291 * 13 12 11 24 24 C 1.38109 * 120.07116 * 0.02562 * 23 13 12 25 25 H 1.08994 * 109.47166 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46842 * 299.96159 * 1 2 3 27 27 H 1.09000 * 109.47019 * 59.95862 * 1 2 3 28 28 H 1.08998 * 110.48695 * 98.42817 * 4 2 1 29 29 H 1.08999 * 110.48827 * 335.78376 * 4 2 1 30 30 H 1.09000 * 110.75622 * 279.63120 * 5 4 2 31 31 H 1.09002 * 110.76161 * 156.25634 * 5 4 2 32 32 H 1.08998 * 110.48266 * 80.73866 * 6 5 4 33 33 H 1.09000 * 110.48216 * 203.37721 * 6 5 4 34 34 H 0.96994 * 120.00209 * 23.62346 * 9 7 2 35 35 H 1.07994 * 120.03479 * 0.02562 * 11 10 9 36 36 H 1.07993 * 119.96850 * 180.25833 * 12 11 10 37 37 H 1.09006 * 109.46929 * 30.01997 * 14 13 12 38 38 H 1.08998 * 109.47171 * 150.01930 * 14 13 12 39 39 H 0.97006 * 119.99813 * 180.02562 * 18 17 15 40 40 H 1.07997 * 119.96481 * 179.97438 * 23 13 12 41 41 H 1.08003 * 120.03506 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3136 -1.5008 -0.7193 6 6 2.8874 -1.9408 0.7034 7 6 2.0571 -0.7537 1.2336 8 1 2.6868 -0.0956 1.8324 9 7 0.9359 -1.2447 2.0386 10 6 1.1150 -1.5075 3.3986 11 6 2.3570 -1.3093 3.9884 12 6 2.5294 -1.5655 5.3344 13 6 1.4699 -2.0291 6.0928 14 6 1.6633 -2.3136 7.5601 15 6 2.0936 -3.7464 7.7415 16 1 2.2145 -4.3871 6.8804 17 6 2.3319 -4.2396 9.0067 18 7 2.1842 -3.4597 10.0552 19 14 2.8660 -6.0155 9.2315 20 1 2.9586 -6.6763 7.9049 21 1 4.1929 -6.0530 9.8972 22 1 1.8706 -6.7292 10.0712 23 6 0.2335 -2.2326 5.5078 24 6 0.0531 -1.9737 4.1632 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5133 0.8904 27 1 -0.3633 0.5145 -0.8896 28 1 2.3297 -0.0536 -2.0255 29 1 1.3142 -1.4659 -1.5967 30 1 4.1710 -0.8291 -0.6753 31 1 3.5325 -2.3679 -1.3424 32 1 2.2771 -2.8427 0.6569 33 1 3.7637 -2.1039 1.3307 34 1 0.0692 -1.3874 1.6271 35 1 3.1858 -0.9512 3.3958 36 1 3.4935 -1.4076 5.7945 37 1 2.4301 -1.6504 7.9607 38 1 0.7253 -2.1461 8.0894 39 1 2.3523 -3.8067 10.9453 40 1 -0.5916 -2.5950 6.1028 41 1 -0.9129 -2.1325 3.7071 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903297965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:42 Heat of formation + Delta-G solvation = -8.319043 kcal Electronic energy + Delta-G solvation = -18836.409914 eV Core-core repulsion = 16100.257596 eV Total energy + Delta-G solvation = -2736.152317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75349 -39.32421 -35.98642 -34.67251 -32.40750 -31.84231 -31.46099 -28.89834 -27.26903 -26.01243 -24.70468 -23.44203 -21.81692 -21.51692 -19.91337 -18.58598 -18.43228 -17.00882 -16.66727 -16.36910 -15.78806 -15.48059 -15.03517 -14.64706 -14.54721 -14.47349 -14.12558 -13.81433 -13.48457 -13.35777 -13.20408 -13.06682 -12.66947 -12.52465 -12.38894 -11.92256 -11.90210 -11.66692 -11.59045 -11.55434 -11.45747 -11.40797 -11.28865 -10.58727 -10.49414 -9.67570 -8.29226 -7.92594 -6.30261 0.68042 0.90507 1.39467 1.39574 1.53748 2.41467 2.63783 3.12504 3.16370 3.60246 3.74646 3.93095 4.14702 4.23431 4.37887 4.46488 4.51028 4.54456 4.59916 4.62203 4.74834 4.78414 4.79607 4.94649 4.98629 5.02893 5.09681 5.19930 5.22789 5.29063 5.33109 5.37820 5.41761 5.42923 5.51793 5.57295 5.71040 5.82092 6.07400 6.24102 6.26117 6.63927 6.83254 7.00666 7.38108 8.92162 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035025 B = 0.003869 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.229281 B = 7235.173547 C = 7608.688557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.084 0.916 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.141 4.141 7 C 0.148 3.852 8 H 0.072 0.928 9 N -0.737 5.737 10 C 0.199 3.801 11 C -0.194 4.194 12 C -0.090 4.090 13 C -0.125 4.125 14 C 0.064 3.936 15 C -0.525 4.525 16 H 0.052 0.948 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.089 4.089 24 C -0.193 4.193 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.405 0.595 35 H 0.132 0.868 36 H 0.108 0.892 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.265 0.735 40 H 0.110 0.890 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 6.415 -24.609 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.181 4.181 7 C 0.042 3.958 8 H 0.090 0.910 9 N -0.371 5.371 10 C 0.097 3.903 11 C -0.216 4.216 12 C -0.109 4.109 13 C -0.127 4.127 14 C 0.027 3.973 15 C -0.563 4.563 16 H 0.070 0.930 17 C -0.196 4.196 18 N -0.573 5.573 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.108 4.108 24 C -0.216 4.216 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.244 0.756 35 H 0.149 0.851 36 H 0.126 0.874 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.073 0.927 40 H 0.128 0.872 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.337 6.496 -24.521 25.402 hybrid contribution 0.034 -0.930 0.929 1.315 sum -1.302 5.566 -23.592 24.275 Atomic orbital electron populations 1.21786 0.94520 1.01784 1.02326 1.21973 0.96591 0.99669 0.93526 0.89715 1.22430 0.97065 0.99035 0.96661 1.22453 0.98178 1.00381 0.94857 1.22889 0.99481 0.98362 0.97324 1.21618 0.87719 0.94628 0.91839 0.91022 1.44972 1.13708 1.73934 1.04533 1.17727 0.93151 0.94221 0.85216 1.20673 0.97027 1.09377 0.94569 1.20830 0.97820 0.98259 0.93971 1.20129 0.94412 1.01115 0.97024 1.17981 0.95097 0.95506 0.88757 1.21480 1.45488 0.96909 0.92426 0.93014 1.25956 0.95528 1.02550 0.95599 1.70098 1.50521 1.37816 0.98840 0.85389 0.78093 0.79187 0.78327 1.19062 1.20076 1.20063 1.20823 0.96444 0.98557 0.94934 1.20651 0.99026 1.08374 0.93521 0.92322 0.92785 0.91109 0.90192 0.91278 0.90773 0.90976 0.92186 0.92473 0.75553 0.85069 0.87423 0.98496 0.98421 0.92650 0.87175 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 7.72 71.98 0.56 -1.31 16 2 C -0.10 -1.36 3.50 -10.07 -0.04 -1.40 16 3 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.11 -1.34 6.36 31.67 0.20 -1.13 16 5 C -0.12 -1.65 6.91 31.89 0.22 -1.43 16 6 C -0.14 -2.68 6.53 31.67 0.21 -2.48 16 7 C 0.15 2.83 2.87 45.71 0.13 2.96 16 8 H 0.07 1.50 6.53 -2.38 -0.02 1.49 16 9 N -0.74 -16.73 4.70 -315.54 -1.48 -18.22 16 10 C 0.20 6.18 6.65 38.21 0.25 6.44 16 11 C -0.19 -6.63 9.21 22.40 0.21 -6.43 16 12 C -0.09 -3.78 9.69 22.25 0.22 -3.56 16 13 C -0.12 -5.91 5.07 -19.84 -0.10 -6.01 16 14 C 0.06 3.61 5.10 29.10 0.15 3.76 16 15 C -0.53 -31.45 9.09 25.60 0.23 -31.22 16 16 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 17 C 0.00 0.07 5.46 84.65 0.46 0.53 16 18 N -0.93 -58.02 13.29 21.44 0.28 -57.74 16 19 Si 0.97 45.75 29.54 68.60 2.03 47.78 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 C -0.09 -3.69 9.69 22.25 0.22 -3.47 16 24 C -0.19 -6.47 9.90 22.40 0.22 -6.24 16 25 H 0.06 0.73 6.85 -2.39 -0.02 0.71 16 26 H 0.05 0.80 7.78 -2.38 -0.02 0.78 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.80 7.85 -2.39 -0.02 0.78 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.28 8.05 -2.39 -0.02 1.26 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.40 7.80 5.76 -92.71 -0.53 7.26 16 35 H 0.13 3.82 6.26 -2.91 -0.02 3.80 16 36 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 37 H 0.00 -0.20 8.08 -2.38 -0.02 -0.22 16 38 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 39 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 40 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 41 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -67.44 326.93 4.42 -63.01 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.46 Total: 16.16 kcal Atomic # 6 Polarization: -54.13 SS G_CDS: 3.14 Total: -51.00 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -1.20 Total: -75.96 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -67.44 4.42 -63.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.692 kcal (2) G-P(sol) polarization free energy of solvation -67.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds