Wall clock time and date at job start Mon Mar 30 2020 07:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.43165 * 2 1 4 4 C 1.54885 * 110.48674 * 237.31303 * 2 1 3 5 5 C 1.54889 * 102.74720 * 203.37735 * 4 2 1 6 6 C 1.54267 * 104.19692 * 37.95030 * 5 4 2 7 7 C 1.53878 * 106.59347 * 336.38295 * 6 5 4 8 8 H 1.09007 * 110.07022 * 119.31412 * 7 6 5 9 9 N 1.46502 * 110.03597 * 240.71353 * 7 6 5 10 10 C 1.39669 * 120.00681 * 272.17296 * 9 7 6 11 11 C 1.38905 * 120.07711 * 179.97438 * 10 9 7 12 12 C 1.38102 * 119.92398 * 179.72013 * 11 10 9 13 13 C 1.38284 * 120.07730 * 0.28542 * 12 11 10 14 14 C 1.50702 * 119.92910 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47375 * 89.99517 * 14 13 12 16 16 H 1.07992 * 119.99685 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99882 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00264 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99727 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47127 * 60.00315 * 19 17 15 21 21 H 1.48500 * 109.46913 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47032 * 300.00174 * 19 17 15 23 23 C 1.38288 * 120.14784 * 0.02562 * 13 12 11 24 24 C 1.38104 * 120.07459 * 0.02562 * 23 13 12 25 25 H 1.08999 * 109.47451 * 297.45452 * 1 2 3 26 26 H 1.09000 * 109.47283 * 57.46063 * 1 2 3 27 27 H 1.09006 * 109.46905 * 177.45787 * 1 2 3 28 28 H 1.08995 * 110.76111 * 321.69412 * 4 2 1 29 29 H 1.08996 * 110.75584 * 85.07042 * 4 2 1 30 30 H 1.09004 * 110.48694 * 156.62275 * 5 4 2 31 31 H 1.08993 * 110.49187 * 279.27013 * 5 4 2 32 32 H 1.09003 * 110.03372 * 217.10892 * 6 5 4 33 33 H 1.08996 * 110.03844 * 95.67087 * 6 5 4 34 34 H 0.97008 * 119.99236 * 92.16807 * 9 7 6 35 35 H 1.08002 * 120.04044 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.96256 * 180.29943 * 12 11 10 37 37 H 1.08998 * 109.46900 * 209.99776 * 14 13 12 38 38 H 1.09005 * 109.46585 * 329.99345 * 14 13 12 39 39 H 0.96990 * 119.99719 * 179.97438 * 18 17 15 40 40 H 1.08007 * 119.96217 * 179.97438 * 23 13 12 41 41 H 1.07998 * 120.03659 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7836 -1.2211 5 6 3.4907 -1.1988 -0.7584 6 6 3.3165 -1.5397 0.7361 7 6 2.0699 -0.7773 1.2183 8 1 1.3172 -1.4797 1.5766 9 7 2.4343 0.1555 2.2875 10 6 2.4433 -0.2742 3.6164 11 6 2.7892 0.6089 4.6313 12 6 2.7914 0.1821 5.9447 13 6 2.4556 -1.1242 6.2496 14 6 2.4597 -1.5865 7.6839 15 6 1.0979 -1.3605 8.2885 16 1 0.3083 -0.9261 7.6935 17 6 0.8598 -1.7095 9.6010 18 7 1.8213 -2.2390 10.3255 19 14 -0.8285 -1.4301 10.3501 20 1 -1.8429 -2.1986 9.5849 21 1 -0.8243 -1.8855 11.7635 22 1 -1.1601 0.0165 10.2975 23 6 2.1170 -2.0077 5.2411 24 6 2.1138 -1.5879 3.9254 25 1 -0.3634 0.4738 0.9119 26 1 -0.3634 0.5528 -0.8663 27 1 -0.3633 -1.0267 -0.0456 28 1 1.4581 -1.6619 -1.4201 29 1 2.1252 -0.1409 -2.0998 30 1 3.8316 -2.0738 -1.3119 31 1 4.1897 -0.3718 -0.8820 32 1 4.1927 -1.2154 1.2976 33 1 3.1692 -2.6125 0.8598 34 1 2.6695 1.0718 2.0724 35 1 3.0513 1.6294 4.3940 36 1 3.0556 0.8695 6.7347 37 1 2.7029 -2.6483 7.7228 38 1 3.2047 -1.0223 8.2453 39 1 1.6538 -2.4841 11.2488 40 1 1.8557 -3.0275 5.4825 41 1 1.8497 -2.2785 3.1382 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903297967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:45 Heat of formation + Delta-G solvation = -1.732164 kcal Electronic energy + Delta-G solvation = -18738.348768 eV Core-core repulsion = 16002.482079 eV Total energy + Delta-G solvation = -2735.866689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.51981 -38.08635 -34.57892 -32.76802 -31.47876 -30.33669 -30.02547 -27.67406 -26.03254 -24.75073 -22.77486 -22.09974 -20.75962 -20.06510 -19.62015 -16.79044 -16.41494 -16.19596 -15.22452 -14.91210 -14.39960 -14.02596 -13.94715 -13.48463 -13.37638 -12.95007 -12.79415 -12.61452 -12.34795 -12.21602 -11.56411 -11.54027 -11.24033 -11.15185 -11.04730 -10.86740 -10.82373 -10.67398 -10.57463 -10.49595 -10.02307 -9.72300 -9.36117 -8.95109 -8.34058 -8.17514 -6.69140 -5.94149 -3.98768 2.18400 2.43157 3.36693 3.40344 3.44023 3.70302 4.31105 4.42629 4.48635 4.63833 4.74603 5.05763 5.23233 5.24209 5.30322 5.35659 5.38224 5.45615 5.56986 5.63436 5.67747 5.69411 5.74840 5.86592 5.96132 6.01521 6.08792 6.14154 6.15733 6.26799 6.38850 6.55666 6.77800 6.93034 7.36079 7.36482 7.52024 7.66675 7.93037 8.01196 8.03112 8.13897 8.45024 9.06967 9.64464 11.14063 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034999 B = 0.003782 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.824484 B = 7401.211223 C = 7690.580831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.076 0.924 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.143 4.143 7 C 0.156 3.844 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.183 3.817 11 C -0.195 4.195 12 C -0.080 4.080 13 C -0.085 4.085 14 C 0.053 3.947 15 C -0.508 4.508 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.081 4.081 24 C -0.195 4.195 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.391 0.609 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.115 0.885 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 3.694 -22.201 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.095 0.905 4 C -0.157 4.157 5 C -0.161 4.161 6 C -0.182 4.182 7 C 0.050 3.950 8 H 0.098 0.902 9 N -0.382 5.382 10 C 0.084 3.916 11 C -0.217 4.217 12 C -0.099 4.099 13 C -0.087 4.087 14 C 0.017 3.983 15 C -0.547 4.547 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.100 4.100 24 C -0.217 4.217 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.467 3.462 -22.102 22.420 hybrid contribution -0.848 0.485 0.447 1.074 sum 0.619 3.946 -21.656 22.021 Atomic orbital electron populations 1.21797 0.94541 1.01989 1.01845 1.22213 0.95980 0.99453 0.94406 0.90538 1.22541 0.96354 0.99781 0.97037 1.22330 0.96854 1.00936 0.95994 1.22740 0.99310 1.00434 0.95729 1.21516 0.95424 0.91395 0.86707 0.90153 1.44583 1.78266 1.12757 1.02584 1.17612 0.96986 0.93259 0.83770 1.20454 1.10092 0.98537 0.92641 1.20819 0.98418 0.95895 0.94744 1.20445 0.97323 0.93056 0.97884 1.18237 0.97320 0.96720 0.86057 1.21106 0.96510 1.40878 0.96174 0.92628 1.25019 0.96908 0.95319 0.97200 1.69952 1.32201 1.42782 1.08672 0.86632 0.84574 0.78629 0.78042 1.20238 1.21313 1.20242 1.20847 0.98065 0.99536 0.91516 1.20528 1.09956 0.94477 0.96762 0.92294 0.92728 0.92497 0.91210 0.91590 0.91807 0.91838 0.90974 0.91639 0.77500 0.87538 0.86684 0.95736 0.95738 0.92924 0.86744 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.12 37.16 0.34 -0.90 16 2 C -0.10 -0.88 3.16 -88.96 -0.28 -1.16 16 3 H 0.08 0.65 7.74 -51.93 -0.40 0.25 16 4 C -0.12 -0.90 6.33 -24.74 -0.16 -1.06 16 5 C -0.12 -1.00 6.83 -25.07 -0.17 -1.18 16 6 C -0.14 -1.46 6.60 -25.61 -0.17 -1.63 16 7 C 0.16 1.69 2.50 -66.81 -0.17 1.52 16 8 H 0.08 0.97 6.15 -51.93 -0.32 0.65 16 9 N -0.75 -9.47 5.16 -51.08 -0.26 -9.74 16 10 C 0.18 3.00 6.65 -83.79 -0.56 2.44 16 11 C -0.19 -3.39 9.90 -39.38 -0.39 -3.78 16 12 C -0.08 -1.63 9.69 -39.61 -0.38 -2.01 16 13 C -0.09 -1.93 5.07 -104.59 -0.53 -2.46 16 14 C 0.05 1.43 5.10 -29.03 -0.15 1.28 16 15 C -0.51 -14.65 9.09 -34.44 -0.31 -14.96 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.08 -1.65 9.69 -39.61 -0.38 -2.04 16 24 C -0.20 -3.42 9.21 -39.38 -0.36 -3.78 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 28 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.84 7.92 -51.93 -0.41 0.43 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.39 4.34 8.37 -40.82 -0.34 4.00 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.11 2.28 8.06 -52.48 -0.42 1.86 16 41 H 0.11 1.66 6.24 -52.49 -0.33 1.34 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -30.28 331.50 -10.15 -40.43 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.83 Total: 1.86 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -3.77 Total: -28.18 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.47 Total: -36.07 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.28 -10.15 -40.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.700 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds