Wall clock time and date at job start Mon Mar 30 2020 07:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.43165 * 2 1 4 4 C 1.54885 * 110.48674 * 237.31303 * 2 1 3 5 5 C 1.54889 * 102.74720 * 203.37735 * 4 2 1 6 6 C 1.54267 * 104.19692 * 37.95030 * 5 4 2 7 7 C 1.53878 * 106.59347 * 336.38295 * 6 5 4 8 8 H 1.09007 * 110.07022 * 119.31412 * 7 6 5 9 9 N 1.46502 * 110.03597 * 240.71353 * 7 6 5 10 10 C 1.39669 * 120.00681 * 272.17296 * 9 7 6 11 11 C 1.38905 * 120.07711 * 179.97438 * 10 9 7 12 12 C 1.38102 * 119.92398 * 179.72013 * 11 10 9 13 13 C 1.38284 * 120.07730 * 0.28542 * 12 11 10 14 14 C 1.50702 * 119.92910 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47375 * 89.99517 * 14 13 12 16 16 H 1.07992 * 119.99685 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99882 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00264 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99727 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47127 * 60.00315 * 19 17 15 21 21 H 1.48500 * 109.46913 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47032 * 300.00174 * 19 17 15 23 23 C 1.38288 * 120.14784 * 0.02562 * 13 12 11 24 24 C 1.38104 * 120.07459 * 0.02562 * 23 13 12 25 25 H 1.08999 * 109.47451 * 297.45452 * 1 2 3 26 26 H 1.09000 * 109.47283 * 57.46063 * 1 2 3 27 27 H 1.09006 * 109.46905 * 177.45787 * 1 2 3 28 28 H 1.08995 * 110.76111 * 321.69412 * 4 2 1 29 29 H 1.08996 * 110.75584 * 85.07042 * 4 2 1 30 30 H 1.09004 * 110.48694 * 156.62275 * 5 4 2 31 31 H 1.08993 * 110.49187 * 279.27013 * 5 4 2 32 32 H 1.09003 * 110.03372 * 217.10892 * 6 5 4 33 33 H 1.08996 * 110.03844 * 95.67087 * 6 5 4 34 34 H 0.97008 * 119.99236 * 92.16807 * 9 7 6 35 35 H 1.08002 * 120.04044 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.96256 * 180.29943 * 12 11 10 37 37 H 1.08998 * 109.46900 * 209.99776 * 14 13 12 38 38 H 1.09005 * 109.46585 * 329.99345 * 14 13 12 39 39 H 0.96990 * 119.99719 * 179.97438 * 18 17 15 40 40 H 1.08007 * 119.96217 * 179.97438 * 23 13 12 41 41 H 1.07998 * 120.03659 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7836 -1.2211 5 6 3.4907 -1.1988 -0.7584 6 6 3.3165 -1.5397 0.7361 7 6 2.0699 -0.7773 1.2183 8 1 1.3172 -1.4797 1.5766 9 7 2.4343 0.1555 2.2875 10 6 2.4433 -0.2742 3.6164 11 6 2.7892 0.6089 4.6313 12 6 2.7914 0.1821 5.9447 13 6 2.4556 -1.1242 6.2496 14 6 2.4597 -1.5865 7.6839 15 6 1.0979 -1.3605 8.2885 16 1 0.3083 -0.9261 7.6935 17 6 0.8598 -1.7095 9.6010 18 7 1.8213 -2.2390 10.3255 19 14 -0.8285 -1.4301 10.3501 20 1 -1.8429 -2.1986 9.5849 21 1 -0.8243 -1.8855 11.7635 22 1 -1.1601 0.0165 10.2975 23 6 2.1170 -2.0077 5.2411 24 6 2.1138 -1.5879 3.9254 25 1 -0.3634 0.4738 0.9119 26 1 -0.3634 0.5528 -0.8663 27 1 -0.3633 -1.0267 -0.0456 28 1 1.4581 -1.6619 -1.4201 29 1 2.1252 -0.1409 -2.0998 30 1 3.8316 -2.0738 -1.3119 31 1 4.1897 -0.3718 -0.8820 32 1 4.1927 -1.2154 1.2976 33 1 3.1692 -2.6125 0.8598 34 1 2.6695 1.0718 2.0724 35 1 3.0513 1.6294 4.3940 36 1 3.0556 0.8695 6.7347 37 1 2.7029 -2.6483 7.7228 38 1 3.2047 -1.0223 8.2453 39 1 1.6538 -2.4841 11.2488 40 1 1.8557 -3.0275 5.4825 41 1 1.8497 -2.2785 3.1382 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903297967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:44 Heat of formation + Delta-G solvation = -17.169035 kcal Electronic energy + Delta-G solvation = -18739.018161 eV Core-core repulsion = 16002.482079 eV Total energy + Delta-G solvation = -2736.536082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64843 -39.25970 -36.04006 -34.69102 -32.18140 -31.90401 -31.61300 -28.90114 -27.48749 -25.72234 -24.59099 -23.50122 -21.80622 -21.20769 -20.62651 -18.48028 -18.02273 -17.37672 -16.72793 -16.05078 -15.89018 -15.41078 -14.74424 -14.68598 -14.51733 -14.46177 -14.07150 -13.96100 -13.86037 -13.23951 -13.21333 -13.00662 -12.60523 -12.52063 -12.40213 -12.12279 -11.89639 -11.67867 -11.60746 -11.52522 -11.45966 -11.38114 -11.31535 -10.57739 -10.49532 -9.68155 -8.29126 -7.93369 -6.30230 0.67553 0.89836 1.39523 1.42824 1.51132 2.41672 2.61694 3.12692 3.15864 3.58701 3.75459 3.91975 4.14659 4.22204 4.35550 4.48865 4.52083 4.55586 4.63281 4.66789 4.73449 4.75547 4.78886 4.96374 4.99561 5.00976 5.12436 5.19964 5.24944 5.29525 5.32178 5.36922 5.40513 5.42887 5.52638 5.56897 5.70700 5.81877 6.06990 6.23733 6.25943 6.62862 6.82944 7.00752 7.38047 8.92147 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034999 B = 0.003782 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.824484 B = 7401.211223 C = 7690.580831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.083 0.917 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.142 4.142 7 C 0.149 3.851 8 H 0.070 0.930 9 N -0.736 5.736 10 C 0.201 3.799 11 C -0.192 4.192 12 C -0.089 4.089 13 C -0.124 4.124 14 C 0.064 3.936 15 C -0.527 4.527 16 H 0.052 0.948 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.966 3.034 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.268 1.268 23 C -0.090 4.090 24 C -0.194 4.194 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.403 0.597 35 H 0.138 0.862 36 H 0.110 0.890 37 H -0.004 1.004 38 H -0.003 1.003 39 H 0.265 0.735 40 H 0.108 0.892 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 4.851 -25.003 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.102 0.898 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.182 4.182 7 C 0.044 3.956 8 H 0.088 0.912 9 N -0.367 5.367 10 C 0.098 3.902 11 C -0.215 4.215 12 C -0.108 4.108 13 C -0.126 4.126 14 C 0.027 3.973 15 C -0.565 4.565 16 H 0.071 0.929 17 C -0.196 4.196 18 N -0.573 5.573 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.193 1.193 23 C -0.109 4.109 24 C -0.216 4.216 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.239 0.761 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.074 0.926 40 H 0.126 0.874 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.401 4.635 -24.958 25.388 hybrid contribution -0.461 0.136 1.174 1.268 sum -0.060 4.771 -23.784 24.258 Atomic orbital electron populations 1.21791 0.94428 1.02112 1.01758 1.22187 0.95966 0.99639 0.93676 0.89829 1.22531 0.95682 1.00027 0.96892 1.22311 0.97483 1.01529 0.94344 1.22697 0.98094 1.00188 0.97186 1.21721 0.95651 0.91378 0.86896 0.91184 1.44668 1.76830 1.13737 1.01431 1.17687 0.94608 0.92550 0.85311 1.20661 1.09296 1.00127 0.91367 1.20827 0.98779 0.94885 0.96299 1.20129 1.01659 0.94893 0.95949 1.17971 0.95824 0.94560 0.88939 1.21429 0.97330 1.41011 0.96775 0.92947 1.25963 1.01259 0.94763 0.97621 1.70085 1.34531 1.43575 1.09097 0.85496 0.79292 0.78958 0.77287 1.19286 1.20461 1.19265 1.20827 0.98547 0.99023 0.92492 1.20660 1.09532 0.95572 0.95880 0.93783 0.91265 0.92478 0.90827 0.90024 0.90917 0.91412 0.92482 0.91791 0.76118 0.84404 0.87182 0.98523 0.98447 0.92634 0.87429 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.12 71.98 0.66 -1.41 16 2 C -0.10 -1.35 3.16 -9.72 -0.03 -1.38 16 3 H 0.08 1.10 7.74 -2.39 -0.02 1.08 16 4 C -0.11 -1.30 6.33 31.88 0.20 -1.10 16 5 C -0.12 -1.56 6.83 31.67 0.22 -1.35 16 6 C -0.14 -2.57 6.60 31.32 0.21 -2.36 16 7 C 0.15 2.84 2.50 45.72 0.11 2.95 16 8 H 0.07 1.52 6.15 -2.38 -0.01 1.51 16 9 N -0.74 -16.52 5.16 -315.52 -1.63 -18.15 16 10 C 0.20 6.20 6.65 38.21 0.25 6.45 16 11 C -0.19 -6.39 9.90 22.40 0.22 -6.17 16 12 C -0.09 -3.69 9.69 22.25 0.22 -3.48 16 13 C -0.12 -5.88 5.07 -19.84 -0.10 -5.98 16 14 C 0.06 3.64 5.10 29.10 0.15 3.78 16 15 C -0.53 -31.57 9.09 25.60 0.23 -31.33 16 16 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 17 C 0.00 0.09 5.46 84.65 0.46 0.56 16 18 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 19 Si 0.97 45.65 29.54 68.60 2.03 47.67 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C -0.09 -3.78 9.69 22.25 0.22 -3.56 16 24 C -0.19 -6.63 9.21 22.40 0.21 -6.42 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.82 8.12 -2.38 -0.02 0.80 16 28 H 0.07 0.82 8.04 -2.39 -0.02 0.80 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.21 7.92 -2.39 -0.02 1.19 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.40 7.51 8.37 -92.70 -0.78 6.74 16 35 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 36 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 37 H 0.00 -0.22 8.08 -2.39 -0.02 -0.23 16 38 H 0.00 -0.17 8.08 -2.38 -0.02 -0.19 16 39 H 0.26 15.44 8.31 -92.72 -0.77 14.67 16 40 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.13 3.81 6.24 -2.91 -0.02 3.79 16 Total: -1.00 -67.31 331.50 4.12 -63.19 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.22 Total: 15.91 kcal Atomic # 6 Polarization: -54.02 SS G_CDS: 3.22 Total: -50.80 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -1.34 Total: -75.98 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -67.31 4.12 -63.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.023 kcal (2) G-P(sol) polarization free energy of solvation -67.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds