Wall clock time and date at job start Mon Mar 30 2020 07:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47377 * 2 1 4 4 H 1.08998 * 109.46766 * 55.00684 * 3 2 1 5 5 N 1.46499 * 109.47537 * 295.00206 * 3 2 1 6 6 C 1.39675 * 119.99612 * 84.99758 * 5 3 2 7 7 C 1.38914 * 120.07282 * 180.02562 * 6 5 3 8 8 C 1.38100 * 119.92419 * 180.02562 * 7 6 5 9 9 C 1.38288 * 120.07489 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.92199 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47001 * 90.00208 * 10 9 8 12 12 H 1.08005 * 119.99817 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00081 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99848 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00321 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46938 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47198 * 120.00527 * 15 13 11 18 18 H 1.48498 * 109.47360 * 240.00281 * 15 13 11 19 19 C 1.38283 * 120.14964 * 0.27921 * 9 8 7 20 20 C 1.38105 * 120.07446 * 359.44518 * 19 9 8 21 21 C 1.53000 * 109.47195 * 175.00170 * 3 2 1 22 22 C 1.52999 * 117.49908 * 248.75276 * 21 3 2 23 23 C 1.53001 * 117.50268 * 180.08909 * 21 3 2 24 24 H 1.09000 * 109.46467 * 299.99642 * 1 2 3 25 25 H 1.08997 * 109.47153 * 59.99414 * 1 2 3 26 26 H 1.09002 * 109.47088 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46893 * 240.00138 * 2 1 3 28 28 H 1.08997 * 109.47153 * 120.00586 * 2 1 3 29 29 H 0.96997 * 119.99975 * 265.00161 * 5 3 2 30 30 H 1.07999 * 120.03471 * 359.97438 * 7 6 5 31 31 H 1.08005 * 119.96293 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.46646 * 209.99665 * 10 9 8 33 33 H 1.09000 * 109.47248 * 330.00383 * 10 9 8 34 34 H 0.96998 * 119.99944 * 179.97438 * 14 13 11 35 35 H 1.08001 * 119.96059 * 179.69879 * 19 9 8 36 36 H 1.07994 * 120.03590 * 180.27360 * 20 19 9 37 37 H 1.09000 * 115.55163 * 34.41707 * 21 3 2 38 38 H 1.08993 * 117.50095 * 359.97438 * 22 21 3 39 39 H 1.09002 * 117.50121 * 145.02368 * 22 21 3 40 40 H 1.08993 * 117.50374 * 214.98424 * 23 21 3 41 41 H 1.09000 * 117.49285 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 7 1.6525 2.0975 -1.2517 6 6 0.3910 2.6851 -1.3709 7 6 0.0217 3.3062 -2.5573 8 6 -1.2262 3.8866 -2.6716 9 6 -2.1079 3.8495 -1.6070 10 6 -3.4691 4.4835 -1.7357 11 6 -4.4500 3.4655 -2.2580 12 1 -4.1205 2.4602 -2.4754 13 6 -5.7678 3.8176 -2.4583 14 7 -6.1688 5.0420 -2.1940 15 14 -6.9836 2.5561 -3.1064 16 1 -6.2866 1.2628 -3.3231 17 1 -8.0768 2.3694 -2.1189 18 1 -7.5539 3.0331 -4.3918 19 6 -1.7415 3.2366 -0.4228 20 6 -0.4973 2.6492 -0.3036 21 6 3.5649 1.4442 0.1257 22 6 4.1657 1.9734 1.4295 23 6 4.2705 2.8016 0.1464 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2720 2.1232 -1.9977 30 1 0.7100 3.3359 -3.3890 31 1 -1.5139 4.3701 -3.5936 32 1 -3.7986 4.8377 -0.7590 33 1 -3.4145 5.3239 -2.4277 34 1 -7.0959 5.2898 -2.3353 35 1 -2.4307 3.2136 0.4084 36 1 -0.2135 2.1669 0.6200 37 1 4.0781 0.6177 -0.3659 38 1 3.4747 2.3206 2.1975 39 1 5.0744 1.4954 1.7954 40 1 5.2480 2.8681 -0.3312 41 1 3.6484 3.6934 0.0701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903298168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:36 Heat of formation + Delta-G solvation = 38.245740 kcal Electronic energy + Delta-G solvation = -18956.005840 eV Core-core repulsion = 16221.872723 eV Total energy + Delta-G solvation = -2734.133117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.54200 -37.87531 -35.30469 -33.21070 -32.23929 -30.22073 -29.88985 -27.23486 -25.33786 -22.90294 -22.59732 -22.42617 -21.62628 -20.35178 -19.61094 -16.89238 -16.41641 -16.19240 -15.45075 -14.73767 -14.61351 -14.33147 -14.01137 -13.68921 -12.96885 -12.79823 -12.66963 -12.50595 -12.28697 -11.91552 -11.76242 -11.41611 -11.19592 -11.15014 -10.97399 -10.86142 -10.63014 -10.55602 -10.43436 -10.33208 -9.94958 -9.64217 -9.36638 -8.93654 -8.34643 -8.12511 -6.65503 -5.94200 -3.98730 2.19368 2.43703 3.33101 3.33735 3.41190 3.46740 3.95808 4.34172 4.47188 4.66208 4.73965 4.80255 4.97480 5.11151 5.24899 5.38131 5.38861 5.41879 5.59004 5.63075 5.67192 5.71619 5.80878 5.90386 5.99785 6.04953 6.11654 6.14803 6.32896 6.39471 6.51341 6.55640 6.78729 6.93765 7.36774 7.37085 7.52384 7.66989 7.93648 8.01239 8.03719 8.15879 8.45129 9.07524 9.64644 11.13874 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034756 B = 0.004124 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.432285 B = 6787.920029 C = 7138.159608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.133 4.133 3 C 0.186 3.814 4 H 0.076 0.924 5 N -0.748 5.748 6 C 0.184 3.816 7 C -0.195 4.195 8 C -0.082 4.082 9 C -0.084 4.084 10 C 0.053 3.947 11 C -0.506 4.506 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.085 4.085 20 C -0.196 4.196 21 C -0.165 4.165 22 C -0.173 4.173 23 C -0.172 4.172 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.392 0.608 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.260 0.740 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.642 -7.117 5.165 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.172 4.172 3 C 0.081 3.919 4 H 0.094 0.906 5 N -0.380 5.380 6 C 0.084 3.916 7 C -0.217 4.217 8 C -0.101 4.101 9 C -0.086 4.086 10 C 0.016 3.984 11 C -0.544 4.544 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.103 4.103 20 C -0.218 4.218 21 C -0.183 4.183 22 C -0.210 4.210 23 C -0.209 4.209 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 19.480 -7.077 5.344 21.404 hybrid contribution -0.513 -0.745 -0.698 1.142 sum 18.967 -7.821 4.647 21.036 Atomic orbital electron populations 1.22178 0.94984 1.01264 1.03254 1.22012 0.97001 0.96615 1.01569 1.20356 0.90611 0.92858 0.88124 0.90648 1.44441 1.14675 1.63680 1.15193 1.17570 0.85468 0.94322 0.94197 1.20450 0.98364 1.06369 0.96557 1.20804 0.92392 0.98439 0.98448 1.20432 0.97445 0.98204 0.92504 1.18248 0.86988 0.95484 0.97702 1.21179 0.93131 0.97194 1.42917 0.92523 1.25021 0.98392 0.95313 0.95780 1.69975 1.16646 1.17812 1.49164 0.86529 0.81172 0.81763 0.78542 1.19715 1.21038 1.21038 1.20833 0.94865 0.96799 0.97846 1.20801 0.95394 1.07293 0.98305 1.22558 0.95007 0.98263 1.02498 1.22980 1.02801 1.04021 0.91215 1.22903 1.01767 0.95052 1.01184 0.92443 0.90710 0.93575 0.92098 0.91884 0.77404 0.87583 0.86766 0.95758 0.95762 0.93058 0.86825 0.86590 0.87717 0.88619 0.88778 0.88970 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.22 37.16 0.31 -1.72 16 2 C -0.13 -1.40 5.59 -26.73 -0.15 -1.55 16 3 C 0.19 1.98 2.41 -67.93 -0.16 1.82 16 4 H 0.08 0.88 6.24 -51.93 -0.32 0.56 16 5 N -0.75 -9.20 5.07 -52.17 -0.26 -9.46 16 6 C 0.18 2.91 5.49 -83.79 -0.46 2.45 16 7 C -0.20 -3.34 9.90 -39.38 -0.39 -3.73 16 8 C -0.08 -1.65 9.69 -39.61 -0.38 -2.04 16 9 C -0.08 -1.88 5.07 -104.58 -0.53 -2.41 16 10 C 0.05 1.39 5.10 -29.03 -0.15 1.25 16 11 C -0.51 -14.50 9.09 -34.44 -0.31 -14.82 16 12 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 C -0.08 -1.69 9.69 -39.61 -0.38 -2.08 16 20 C -0.20 -3.30 6.72 -39.38 -0.26 -3.57 16 21 C -0.16 -1.42 5.22 -90.62 -0.47 -1.89 16 22 C -0.17 -1.35 10.18 -26.69 -0.27 -1.62 16 23 C -0.17 -1.45 10.13 -26.69 -0.27 -1.72 16 24 H 0.06 0.72 6.35 -51.93 -0.33 0.39 16 25 H 0.07 1.15 5.39 -51.93 -0.28 0.87 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.39 4.33 8.62 -40.82 -0.35 3.98 16 30 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.11 2.25 8.06 -52.48 -0.42 1.83 16 32 H 0.02 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.02 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.12 1.72 4.01 -52.49 -0.21 1.51 16 37 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 38 H 0.10 0.76 8.05 -51.93 -0.42 0.35 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 329.17 15.07 4.96 4.96 Total: -1.00 -29.99 329.17 -10.10 -40.10 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.52 Total: 3.87 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: -3.99 Total: -30.13 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.47 Total: -35.72 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.99 -10.10 -40.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903298168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.342 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds