Wall clock time and date at job start Mon Mar 30 2020 07:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47377 * 2 1 4 4 H 1.08998 * 109.46766 * 55.00684 * 3 2 1 5 5 N 1.46499 * 109.47537 * 295.00206 * 3 2 1 6 6 C 1.39675 * 119.99612 * 84.99758 * 5 3 2 7 7 C 1.38914 * 120.07282 * 180.02562 * 6 5 3 8 8 C 1.38100 * 119.92419 * 180.02562 * 7 6 5 9 9 C 1.38288 * 120.07489 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.92199 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47001 * 90.00208 * 10 9 8 12 12 H 1.08005 * 119.99817 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00081 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99848 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00321 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46938 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47198 * 120.00527 * 15 13 11 18 18 H 1.48498 * 109.47360 * 240.00281 * 15 13 11 19 19 C 1.38283 * 120.14964 * 0.27921 * 9 8 7 20 20 C 1.38105 * 120.07446 * 359.44518 * 19 9 8 21 21 C 1.53000 * 109.47195 * 175.00170 * 3 2 1 22 22 C 1.52999 * 117.49908 * 248.75276 * 21 3 2 23 23 C 1.53001 * 117.50268 * 180.08909 * 21 3 2 24 24 H 1.09000 * 109.46467 * 299.99642 * 1 2 3 25 25 H 1.08997 * 109.47153 * 59.99414 * 1 2 3 26 26 H 1.09002 * 109.47088 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46893 * 240.00138 * 2 1 3 28 28 H 1.08997 * 109.47153 * 120.00586 * 2 1 3 29 29 H 0.96997 * 119.99975 * 265.00161 * 5 3 2 30 30 H 1.07999 * 120.03471 * 359.97438 * 7 6 5 31 31 H 1.08005 * 119.96293 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.46646 * 209.99665 * 10 9 8 33 33 H 1.09000 * 109.47248 * 330.00383 * 10 9 8 34 34 H 0.96998 * 119.99944 * 179.97438 * 14 13 11 35 35 H 1.08001 * 119.96059 * 179.69879 * 19 9 8 36 36 H 1.07994 * 120.03590 * 180.27360 * 20 19 9 37 37 H 1.09000 * 115.55163 * 34.41707 * 21 3 2 38 38 H 1.08993 * 117.50095 * 359.97438 * 22 21 3 39 39 H 1.09002 * 117.50121 * 145.02368 * 22 21 3 40 40 H 1.08993 * 117.50374 * 214.98424 * 23 21 3 41 41 H 1.09000 * 117.49285 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 7 1.6525 2.0975 -1.2517 6 6 0.3910 2.6851 -1.3709 7 6 0.0217 3.3062 -2.5573 8 6 -1.2262 3.8866 -2.6716 9 6 -2.1079 3.8495 -1.6070 10 6 -3.4691 4.4835 -1.7357 11 6 -4.4500 3.4655 -2.2580 12 1 -4.1205 2.4602 -2.4754 13 6 -5.7678 3.8176 -2.4583 14 7 -6.1688 5.0420 -2.1940 15 14 -6.9836 2.5561 -3.1064 16 1 -6.2866 1.2628 -3.3231 17 1 -8.0768 2.3694 -2.1189 18 1 -7.5539 3.0331 -4.3918 19 6 -1.7415 3.2366 -0.4228 20 6 -0.4973 2.6492 -0.3036 21 6 3.5649 1.4442 0.1257 22 6 4.1657 1.9734 1.4295 23 6 4.2705 2.8016 0.1464 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2720 2.1232 -1.9977 30 1 0.7100 3.3359 -3.3890 31 1 -1.5139 4.3701 -3.5936 32 1 -3.7986 4.8377 -0.7590 33 1 -3.4145 5.3239 -2.4277 34 1 -7.0959 5.2898 -2.3353 35 1 -2.4307 3.2136 0.4084 36 1 -0.2135 2.1669 0.6200 37 1 4.0781 0.6177 -0.3659 38 1 3.4747 2.3206 2.1975 39 1 5.0744 1.4954 1.7954 40 1 5.2480 2.8681 -0.3312 41 1 3.6484 3.6934 0.0701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903298168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:36 Heat of formation + Delta-G solvation = 22.899487 kcal Electronic energy + Delta-G solvation = -18956.671303 eV Core-core repulsion = 16221.872723 eV Total energy + Delta-G solvation = -2734.798580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74056 -38.94458 -36.43934 -35.06030 -33.60027 -31.81506 -31.36227 -28.72166 -26.78566 -24.62499 -23.92927 -23.17811 -22.54638 -21.62469 -20.79869 -18.48728 -18.10628 -17.35067 -16.74728 -16.30216 -15.68329 -15.54000 -15.24700 -15.01704 -14.49627 -14.29888 -14.10005 -13.79938 -13.54203 -13.23198 -13.19206 -12.87579 -12.57066 -12.48175 -12.36921 -12.26849 -11.91990 -11.84819 -11.60835 -11.41514 -11.33566 -11.12482 -11.00358 -10.58331 -10.47254 -9.60151 -8.27747 -7.88376 -6.29796 0.71070 0.92824 1.39430 1.39486 1.53641 2.41589 2.44921 3.12822 3.13395 3.19652 3.60137 3.99437 4.04717 4.16740 4.20471 4.26742 4.36319 4.44046 4.50669 4.55121 4.73969 4.80482 4.83197 4.84336 4.97074 5.05269 5.09087 5.13892 5.19753 5.25544 5.29994 5.37761 5.41272 5.43298 5.51039 5.59403 5.72500 5.83636 6.08351 6.26433 6.26856 6.64832 6.83801 7.04670 7.38514 8.92509 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034756 B = 0.004124 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.432285 B = 6787.920029 C = 7138.159608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.126 4.126 3 C 0.183 3.817 4 H 0.067 0.933 5 N -0.734 5.734 6 C 0.204 3.796 7 C -0.194 4.194 8 C -0.092 4.092 9 C -0.124 4.124 10 C 0.063 3.937 11 C -0.524 4.524 12 H 0.052 0.948 13 C 0.001 3.999 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.276 1.276 19 C -0.095 4.095 20 C -0.189 4.189 21 C -0.162 4.162 22 C -0.166 4.166 23 C -0.176 4.176 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.403 0.597 30 H 0.136 0.864 31 H 0.107 0.893 32 H -0.004 1.004 33 H -0.004 1.004 34 H 0.264 0.736 35 H 0.106 0.894 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.053 -9.430 5.305 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.165 4.165 3 C 0.078 3.922 4 H 0.085 0.915 5 N -0.364 5.364 6 C 0.102 3.898 7 C -0.216 4.216 8 C -0.111 4.111 9 C -0.125 4.125 10 C 0.026 3.974 11 C -0.562 4.562 12 H 0.070 0.930 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.790 3.210 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.113 4.113 20 C -0.211 4.211 21 C -0.181 4.181 22 C -0.203 4.203 23 C -0.213 4.213 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.239 0.761 30 H 0.154 0.846 31 H 0.126 0.874 32 H 0.014 0.986 33 H 0.015 0.985 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.157 0.843 37 H 0.137 0.863 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 21.940 -9.406 5.489 24.494 hybrid contribution -1.120 -0.048 -0.683 1.312 sum 20.820 -9.453 4.806 23.365 Atomic orbital electron populations 1.22146 0.96773 1.01211 1.01660 1.21963 0.95166 0.96511 1.02848 1.20497 0.92321 0.92669 0.86721 0.91474 1.44525 1.13191 1.62311 1.16409 1.17614 0.86453 0.92597 0.93171 1.20641 0.97469 1.05570 0.97968 1.20792 0.93521 0.99205 0.97595 1.20104 0.96249 1.01372 0.94818 1.17980 0.89717 0.94559 0.95107 1.21475 0.94153 0.97346 1.43181 0.93006 1.25956 1.00398 0.97464 0.95838 1.70101 1.17351 1.19825 1.50035 0.85396 0.78460 0.79048 0.78141 1.19032 1.20095 1.20103 1.20804 0.96270 0.97417 0.96837 1.20919 0.94162 1.06437 0.99600 1.22475 0.93269 0.98845 1.03522 1.23068 1.03227 1.03298 0.90756 1.22909 1.02105 0.94270 1.02027 0.92648 0.93547 0.93003 0.91566 0.89827 0.76133 0.84628 0.87445 0.98552 0.98546 0.92678 0.87591 0.84333 0.86276 0.88946 0.87085 0.87663 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.22 71.98 0.59 -3.16 16 2 C -0.13 -2.23 5.59 30.59 0.17 -2.05 16 3 C 0.18 3.30 2.41 44.99 0.11 3.41 16 4 H 0.07 1.37 6.24 -2.39 -0.01 1.36 16 5 N -0.73 -15.89 5.07 -318.96 -1.62 -17.50 16 6 C 0.20 6.12 5.49 38.21 0.21 6.33 16 7 C -0.19 -6.41 9.90 22.40 0.22 -6.19 16 8 C -0.09 -3.82 9.69 22.25 0.22 -3.60 16 9 C -0.12 -5.81 5.07 -19.84 -0.10 -5.91 16 10 C 0.06 3.59 5.10 29.10 0.15 3.74 16 11 C -0.52 -31.32 9.09 25.60 0.23 -31.08 16 12 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 13 C 0.00 0.05 5.46 84.65 0.46 0.52 16 14 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 15 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 C -0.09 -3.91 9.69 22.25 0.22 -3.69 16 20 C -0.19 -6.25 6.72 22.40 0.15 -6.09 16 21 C -0.16 -2.19 5.22 -10.79 -0.06 -2.24 16 22 C -0.17 -2.03 10.18 30.62 0.31 -1.72 16 23 C -0.18 -2.43 10.13 30.62 0.31 -2.12 16 24 H 0.05 1.29 6.35 -2.39 -0.02 1.27 16 25 H 0.05 1.35 5.39 -2.39 -0.01 1.33 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.40 7.43 8.62 -92.71 -0.80 6.63 16 30 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 31 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.00 -0.23 8.08 -2.39 -0.02 -0.25 16 33 H 0.00 -0.23 8.08 -2.39 -0.02 -0.25 16 34 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.14 3.91 4.01 -2.91 -0.01 3.89 16 37 H 0.12 1.34 8.11 -2.39 -0.02 1.32 16 38 H 0.09 1.21 8.05 -2.39 -0.02 1.19 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -67.28 329.17 4.10 -63.19 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.21 Total: 18.20 kcal Atomic # 6 Polarization: -57.06 SS G_CDS: 3.19 Total: -53.87 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.33 Total: -75.30 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -67.28 4.10 -63.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903298168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.086 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds