Wall clock time and date at job start Mon Mar 30 2020 06:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00379 * 2 1 4 4 H 1.48500 * 109.47264 * 270.00428 * 3 2 1 5 5 H 1.48496 * 109.46781 * 30.00382 * 3 2 1 6 6 H 1.48503 * 109.47106 * 150.00446 * 3 2 1 7 7 C 1.37880 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00435 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00034 * 179.97438 * 7 2 1 10 10 S 1.81395 * 109.47328 * 180.02562 * 9 7 2 11 11 O 1.42096 * 110.54582 * 68.36909 * 10 9 7 12 12 O 1.42103 * 110.54102 * 291.62070 * 10 9 7 13 13 C 1.76199 * 104.45016 * 180.02562 * 10 9 7 14 14 C 1.38270 * 119.99095 * 270.27346 * 13 10 9 15 15 C 1.38215 * 120.02537 * 180.27979 * 14 13 10 16 16 C 1.38238 * 120.01126 * 359.44038 * 15 14 13 17 17 C 1.38325 * 119.98878 * 0.28199 * 16 15 14 18 18 Cl 1.73606 * 120.01335 * 179.97438 * 17 16 15 19 19 C 1.38193 * 119.99770 * 89.99780 * 13 10 9 20 20 H 0.97006 * 119.99531 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47160 * 59.99412 * 9 7 2 22 22 H 1.09010 * 109.46726 * 299.99979 * 9 7 2 23 23 H 1.07997 * 119.98420 * 0.02562 * 14 13 10 24 24 H 1.08002 * 119.99636 * 179.72646 * 15 14 13 25 25 H 1.07999 * 120.00577 * 180.25936 * 16 15 14 26 26 H 1.08003 * 120.00423 * 0.02562 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6525 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 16 4.1161 -2.9045 -0.0025 11 8 3.8194 -3.5373 -1.2397 12 8 3.8205 -3.5388 1.2342 13 6 5.8713 -2.7503 -0.0023 14 6 6.5594 -2.6832 -1.1998 15 6 7.9367 -2.5681 -1.2005 16 6 8.6262 -2.5084 -0.0038 17 6 7.9379 -2.5697 1.1945 18 17 8.8032 -2.4955 2.6977 19 6 6.5595 -2.6908 1.1946 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6805 0.8888 22 1 3.8745 -0.6802 -0.8912 23 1 6.0207 -2.7248 -2.1349 24 1 8.4741 -2.5201 -2.1361 25 1 9.7021 -2.4142 -0.0045 26 1 6.0216 -2.7392 2.1299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020223314.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:30 Heat of formation + Delta-G solvation = -56.529802 kcal Electronic energy + Delta-G solvation = -14878.948876 eV Core-core repulsion = 12075.808059 eV Total energy + Delta-G solvation = -2803.140817 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.006 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.30845 -36.62066 -36.34826 -35.19717 -33.31902 -31.45023 -30.87402 -29.86591 -23.66817 -22.91250 -22.79097 -18.79012 -17.83333 -17.03969 -15.92159 -15.91269 -15.56017 -14.97441 -14.67015 -14.18859 -13.90777 -13.70064 -12.76718 -12.59912 -12.32089 -11.84311 -11.78442 -11.65668 -11.36622 -11.31218 -11.19575 -10.90873 -10.56993 -10.29324 -9.94264 -9.63089 -9.32652 -8.95241 -8.88895 -6.37042 -4.47285 0.58741 0.90280 1.01329 1.92882 3.11234 3.19055 3.20419 3.24056 3.67389 4.16890 4.51115 4.58484 4.71765 4.79067 4.97391 5.01252 5.24772 5.38924 5.58836 5.86305 5.98379 6.02861 6.13522 6.26115 6.52337 7.09518 7.94698 8.54287 9.16978 10.73742 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.024722 B = 0.006563 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.321879 B = 4265.577856 C = 4584.246977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.091 3.909 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.538 4.538 8 H 0.089 0.911 9 C -0.446 4.446 10 S 2.488 3.512 11 O -0.947 6.947 12 O -0.947 6.947 13 C -0.644 4.644 14 C -0.022 4.022 15 C -0.131 4.131 16 C -0.069 4.069 17 C -0.059 4.059 18 Cl -0.068 7.068 19 C -0.016 4.016 20 H 0.273 0.727 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.149 0.851 24 H 0.140 0.860 25 H 0.137 0.863 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.479 -1.435 -0.127 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.116 4.116 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.576 4.576 8 H 0.107 0.893 9 C -0.581 4.581 10 S 2.669 3.331 11 O -0.945 6.945 12 O -0.944 6.944 13 C -0.727 4.727 14 C -0.040 4.040 15 C -0.150 4.150 16 C -0.087 4.087 17 C -0.086 4.086 18 Cl -0.039 7.039 19 C -0.035 4.035 20 H 0.083 0.917 21 H 0.108 0.892 22 H 0.103 0.897 23 H 0.167 0.833 24 H 0.158 0.842 25 H 0.155 0.845 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 17.007 -2.128 0.013 17.139 hybrid contribution 1.149 1.555 0.148 1.939 sum 18.156 -0.573 0.161 18.166 Atomic orbital electron populations 1.69860 1.06284 1.27923 1.47163 1.24859 0.94733 0.99111 0.92903 0.86759 0.80503 0.83002 0.79154 1.19473 1.20484 1.18626 1.20090 0.84806 0.96481 1.56248 0.89287 1.27956 1.08262 1.15573 1.06283 1.06067 0.72390 0.80150 0.74538 1.93485 1.82167 1.74231 1.44581 1.93490 1.82218 1.74150 1.44584 1.31420 1.28802 1.14289 0.98146 1.21162 0.94676 0.90799 0.97392 1.21267 0.94373 1.01415 0.97897 1.21291 1.00523 0.95985 0.90927 1.20998 0.92761 1.07331 0.87539 1.98371 1.76539 1.96910 1.32094 1.20918 0.92346 0.91923 0.98346 0.91719 0.89243 0.89687 0.83304 0.84245 0.84499 0.82987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.96 55.43 0.77 -24.65 15 2 C 0.09 2.49 5.47 -17.82 -0.10 2.39 15 3 Si 0.88 19.80 27.47 -169.99 -4.67 15.13 15 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 15 6 H -0.26 -5.48 6.54 56.52 0.37 -5.11 15 7 C -0.54 -14.51 9.68 -34.44 -0.33 -14.84 15 8 H 0.09 2.59 7.96 -52.49 -0.42 2.17 15 9 C -0.45 -9.55 4.80 36.01 0.17 -9.38 15 10 S 2.49 49.43 5.08 -107.50 -0.55 48.89 15 11 O -0.95 -20.73 17.14 -57.54 -0.99 -21.72 15 12 O -0.95 -21.07 17.12 -57.54 -0.99 -22.06 15 13 C -0.64 -10.31 5.66 -39.59 -0.22 -10.53 15 14 C -0.02 -0.30 9.47 -39.58 -0.37 -0.67 15 15 C -0.13 -1.43 10.05 -39.59 -0.40 -1.83 15 16 C -0.07 -0.75 9.83 -39.55 -0.39 -1.14 15 17 C -0.06 -0.77 6.32 -39.50 -0.25 -1.02 15 18 Cl -0.07 -0.80 28.96 -51.86 -1.50 -2.30 15 19 C -0.02 -0.24 9.26 -39.55 -0.37 -0.61 15 20 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 21 H 0.09 1.76 7.20 -51.92 -0.37 1.39 15 22 H 0.09 1.62 7.57 -51.92 -0.39 1.23 15 23 H 0.15 1.85 7.58 -52.49 -0.40 1.45 15 24 H 0.14 1.05 8.06 -52.49 -0.42 0.63 15 25 H 0.14 1.10 8.06 -52.49 -0.42 0.68 15 26 H 0.15 2.22 7.57 -52.48 -0.40 1.82 15 LS Contribution 263.31 15.07 3.97 3.97 Total: -1.00 -32.28 263.31 -8.20 -40.47 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -1.99 Total: -0.11 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: -2.26 Total: -37.62 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.77 Total: -24.65 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.97 Total: -43.78 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.67 Total: 15.13 kcal Atomic # 16 Polarization: 49.43 SS G_CDS: -0.55 Total: 48.89 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.28 -8.20 -40.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020223314.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.055 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds