Wall clock time and date at job start Mon Mar 30 2020 06:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00379 * 2 1 4 4 H 1.48500 * 109.47264 * 270.00428 * 3 2 1 5 5 H 1.48496 * 109.46781 * 30.00382 * 3 2 1 6 6 H 1.48503 * 109.47106 * 150.00446 * 3 2 1 7 7 C 1.37880 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00435 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00034 * 179.97438 * 7 2 1 10 10 S 1.81395 * 109.47328 * 180.02562 * 9 7 2 11 11 O 1.42096 * 110.54582 * 68.36909 * 10 9 7 12 12 O 1.42103 * 110.54102 * 291.62070 * 10 9 7 13 13 C 1.76199 * 104.45016 * 180.02562 * 10 9 7 14 14 C 1.38270 * 119.99095 * 270.27346 * 13 10 9 15 15 C 1.38215 * 120.02537 * 180.27979 * 14 13 10 16 16 C 1.38238 * 120.01126 * 359.44038 * 15 14 13 17 17 C 1.38325 * 119.98878 * 0.28199 * 16 15 14 18 18 Cl 1.73606 * 120.01335 * 179.97438 * 17 16 15 19 19 C 1.38193 * 119.99770 * 89.99780 * 13 10 9 20 20 H 0.97006 * 119.99531 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47160 * 59.99412 * 9 7 2 22 22 H 1.09010 * 109.46726 * 299.99979 * 9 7 2 23 23 H 1.07997 * 119.98420 * 0.02562 * 14 13 10 24 24 H 1.08002 * 119.99636 * 179.72646 * 15 14 13 25 25 H 1.07999 * 120.00577 * 180.25936 * 16 15 14 26 26 H 1.08003 * 120.00423 * 0.02562 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6525 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 16 4.1161 -2.9045 -0.0025 11 8 3.8194 -3.5373 -1.2397 12 8 3.8205 -3.5388 1.2342 13 6 5.8713 -2.7503 -0.0023 14 6 6.5594 -2.6832 -1.1998 15 6 7.9367 -2.5681 -1.2005 16 6 8.6262 -2.5084 -0.0038 17 6 7.9379 -2.5697 1.1945 18 17 8.8032 -2.4955 2.6977 19 6 6.5595 -2.6908 1.1946 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6805 0.8888 22 1 3.8745 -0.6802 -0.8912 23 1 6.0207 -2.7248 -2.1349 24 1 8.4741 -2.5201 -2.1361 25 1 9.7021 -2.4142 -0.0045 26 1 6.0216 -2.7392 2.1299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020223314.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:30 Heat of formation + Delta-G solvation = -79.611309 kcal Electronic energy + Delta-G solvation = -14879.949765 eV Core-core repulsion = 12075.808059 eV Total energy + Delta-G solvation = -2804.141706 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.006 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.30553 -38.04031 -37.54289 -36.87341 -35.32933 -32.48619 -31.88383 -31.75347 -25.27417 -24.27595 -23.85828 -20.14522 -19.55623 -18.63121 -17.38856 -17.17402 -16.98813 -16.17307 -16.07188 -15.90899 -14.83446 -14.76469 -14.64577 -14.29263 -13.58422 -13.35781 -13.06794 -13.02377 -12.78018 -12.69563 -12.61707 -12.35292 -12.19026 -11.85358 -11.67660 -11.23318 -10.92233 -10.45767 -9.93994 -8.43713 -6.61058 -0.79243 -0.33194 0.02130 0.97784 1.35932 1.38773 1.49702 2.13990 2.28584 2.30719 2.87755 3.01677 3.29756 3.70288 3.89323 4.00771 4.20679 4.32322 4.41029 4.58361 4.66017 4.88296 5.03443 5.10518 5.19550 5.58797 5.83032 6.43766 7.07428 8.71461 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.024722 B = 0.006563 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.321879 B = 4265.577856 C = 4584.246977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 0.948 3.052 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.231 1.231 7 C -0.559 4.559 8 H 0.042 0.958 9 C -0.458 4.458 10 S 2.501 3.499 11 O -0.977 6.977 12 O -0.984 6.984 13 C -0.649 4.649 14 C -0.033 4.033 15 C -0.115 4.115 16 C -0.053 4.053 17 C -0.066 4.066 18 Cl -0.058 7.058 19 C -0.036 4.036 20 H 0.277 0.723 21 H 0.112 0.888 22 H 0.115 0.885 23 H 0.158 0.842 24 H 0.184 0.816 25 H 0.175 0.825 26 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.623 0.029 -0.870 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.154 1.154 7 C -0.597 4.597 8 H 0.061 0.939 9 C -0.592 4.592 10 S 2.687 3.313 11 O -0.975 6.975 12 O -0.981 6.981 13 C -0.738 4.738 14 C -0.052 4.052 15 C -0.134 4.134 16 C -0.072 4.072 17 C -0.093 4.093 18 Cl -0.029 7.029 19 C -0.055 4.055 20 H 0.086 0.914 21 H 0.129 0.871 22 H 0.133 0.867 23 H 0.175 0.825 24 H 0.201 0.799 25 H 0.193 0.807 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 21.091 -0.683 -0.726 21.115 hybrid contribution -0.026 0.996 0.383 1.067 sum 21.066 0.313 -0.342 21.071 Atomic orbital electron populations 1.70016 1.08545 1.29342 1.48968 1.25995 0.95663 1.03724 0.92112 0.85689 0.80108 0.77019 0.80358 1.17735 1.20343 1.15411 1.20371 0.88084 0.95067 1.56207 0.93938 1.27994 1.04614 1.18027 1.08523 1.05019 0.74043 0.79013 0.73204 1.93436 1.83992 1.74567 1.45473 1.93435 1.84151 1.74666 1.45869 1.30500 1.25101 1.18230 0.99952 1.21460 0.96334 0.90748 0.96627 1.21732 0.93007 0.98888 0.99756 1.21800 1.02373 0.93142 0.89842 1.21123 0.92068 1.07207 0.88924 1.98378 1.75959 1.96847 1.31752 1.20939 0.93689 0.93170 0.97724 0.91389 0.87054 0.86673 0.82489 0.79903 0.80746 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.96 21.45 0.30 -55.93 15 2 C 0.03 1.49 5.47 84.66 0.46 1.96 15 3 Si 0.95 39.87 27.47 68.60 1.88 41.75 15 4 H -0.25 -9.95 7.11 99.48 0.71 -9.24 15 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 15 6 H -0.23 -8.52 6.54 99.48 0.65 -7.87 15 7 C -0.56 -31.32 9.68 25.60 0.25 -31.08 15 8 H 0.04 2.67 7.96 -2.91 -0.02 2.65 15 9 C -0.46 -19.50 4.80 71.24 0.34 -19.16 15 10 S 2.50 101.47 5.08 -56.49 -0.29 101.19 15 11 O -0.98 -43.98 17.14 -127.65 -2.19 -46.17 15 12 O -0.98 -45.74 17.12 -127.65 -2.19 -47.93 15 13 C -0.65 -19.86 5.66 22.27 0.13 -19.73 15 14 C -0.03 -0.79 9.47 22.27 0.21 -0.58 15 15 C -0.12 -1.92 10.05 22.26 0.22 -1.69 15 16 C -0.05 -0.89 9.83 22.29 0.22 -0.68 15 17 C -0.07 -1.50 6.32 22.32 0.14 -1.36 15 18 Cl -0.06 -1.20 28.96 -2.72 -0.08 -1.28 15 19 C -0.04 -1.02 9.26 22.29 0.21 -0.81 15 20 H 0.28 15.29 8.31 -92.70 -0.77 14.52 15 21 H 0.11 4.24 7.20 -2.39 -0.02 4.22 15 22 H 0.12 4.19 7.57 -2.39 -0.02 4.17 15 23 H 0.16 3.48 7.58 -2.91 -0.02 3.46 15 24 H 0.18 1.50 8.06 -2.91 -0.02 1.47 15 25 H 0.18 1.66 8.06 -2.91 -0.02 1.64 15 26 H 0.14 4.21 7.57 -2.91 -0.02 4.19 15 Total: -1.00 -73.91 263.31 0.77 -73.14 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.14 Total: 8.36 kcal Atomic # 6 Polarization: -75.31 SS G_CDS: 2.18 Total: -73.13 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.30 Total: -55.93 kcal Atomic # 8 Polarization: -89.73 SS G_CDS: -4.37 Total: -94.10 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 1.88 Total: 41.75 kcal Atomic # 16 Polarization: 101.47 SS G_CDS: -0.29 Total: 101.19 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -73.91 0.77 -73.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020223314.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.470 kcal (2) G-P(sol) polarization free energy of solvation -73.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds