Wall clock time and date at job start Mon Mar 30 2020 06:49:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31504 * 1
3 3 Si 1.86803 * 119.99880 * 2 1
4 4 H 1.48491 * 109.47369 * 240.00390 * 3 2 1
5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.46993 * 120.00185 * 3 2 1
7 7 C 1.38723 * 120.00174 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99739 * 179.97438 * 7 2 1
9 9 O 1.34786 * 119.99908 * 0.27804 * 7 2 1
10 10 C 1.35477 * 117.00105 * 179.72546 * 9 7 2
11 11 C 1.38950 * 120.17190 * 269.72325 * 10 9 7
12 12 Cl 1.73596 * 119.95309 * 0.02562 * 11 10 9
13 13 C 1.38098 * 120.08708 * 179.74505 * 11 10 9
14 14 C 1.38755 * 120.44426 * 0.55337 * 13 11 10
15 15 Cl 1.73602 * 119.82411 * 179.72372 * 14 13 11
16 16 C 1.37821 * 120.34617 * 359.69820 * 14 13 11
17 17 C 1.39994 * 119.90449 * 0.02562 * 16 14 13
18 18 C 1.46765 * 120.21860 * 179.97438 * 17 16 14
19 19 O 1.21304 * 120.00018 * 0.02562 * 18 17 16
20 20 H 0.96996 * 120.00387 * 359.97438 * 1 2 3
21 21 H 1.08001 * 119.77567 * 180.29840 * 13 11 10
22 22 H 1.08003 * 120.04222 * 180.02562 * 16 14 13
23 23 H 1.07999 * 120.00137 * 180.02562 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3150 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.1027 1.6966 -1.2124
5 1 1.2840 2.7465 0.0006
6 1 3.1028 1.6964 1.2125
7 6 2.0087 -1.2014 -0.0005
8 1 3.0887 -1.2013 -0.0010
9 8 1.3348 -2.3686 -0.0067
10 6 2.0727 -3.5048 -0.0127
11 6 2.4482 -4.0873 -1.2170
12 17 1.9718 -3.3578 -2.7184
13 6 3.2048 -5.2426 -1.2210
14 6 3.5864 -5.8373 -0.0269
15 17 4.5314 -7.2934 -0.0508
16 6 3.2195 -5.2778 1.1781
17 6 2.4575 -4.1037 1.1992
18 6 2.0625 -3.5023 2.4784
19 8 2.3968 -4.0224 3.5220
20 1 -0.4850 0.8400 0.0004
21 1 3.4980 -5.6884 -2.1600
22 1 3.5196 -5.7446 2.1046
23 1 1.4742 -2.5967 2.4905
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000035662306.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:49:03
Heat of formation + Delta-G solvation = -64.295464 kcal
Electronic energy + Delta-G solvation = -14662.802216 eV
Core-core repulsion = 11721.447854 eV
Total energy + Delta-G solvation = -2941.354362 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 259.979 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-41.31616 -39.57832 -38.57935 -37.57154 -37.02620 -34.10070 -32.35325 -30.83425
-27.11716 -26.06240 -23.55798 -22.19935 -20.14339 -18.82558 -18.13830 -17.76907
-16.40089 -16.08309 -15.90365 -15.73391 -15.60497 -15.05995 -14.47046 -14.01068
-13.93357 -13.48691 -13.22149 -12.89147 -12.30109 -12.24355 -12.15374 -12.03750
-11.84966 -11.68108 -10.89433 -10.36580 -10.12013 -9.53407 -8.23896 -6.00801
-0.66997 -0.13763 0.77182 1.20649 1.27553 1.44876 1.49180 1.56055
2.20707 2.45821 3.10930 3.20250 3.34521 3.76097 3.93197 4.09717
4.21121 4.53288 4.75161 4.90336 4.95225 5.16739 5.29607 6.11403
6.28687 7.17822 7.86582 8.96577
Molecular weight = 259.98amu
Principal moments of inertia in cm(-1)
A = 0.022453 B = 0.007570 C = 0.006217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1246.766589 B = 3698.068035 C = 4502.984165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.012 4.012
3 Si 0.994 3.006
4 H -0.266 1.266
5 H -0.279 1.279
6 H -0.262 1.262
7 C -0.374 4.374
8 H 0.077 0.923
9 O -0.251 6.251
10 C 0.181 3.819
11 C -0.084 4.084
12 Cl -0.046 7.046
13 C -0.046 4.046
14 C -0.060 4.060
15 Cl -0.040 7.040
16 C -0.030 4.030
17 C -0.215 4.215
18 C 0.410 3.590
19 O -0.490 6.490
20 H 0.266 0.734
21 H 0.173 0.827
22 H 0.159 0.841
23 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.727 -9.344 -2.410 12.362
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.560 5.560
2 C -0.209 4.209
3 Si 0.816 3.184
4 H -0.191 1.191
5 H -0.204 1.204
6 H -0.187 1.187
7 C -0.450 4.450
8 H 0.095 0.905
9 O -0.164 6.164
10 C 0.134 3.866
11 C -0.111 4.111
12 Cl -0.017 7.017
13 C -0.065 4.065
14 C -0.087 4.087
15 Cl -0.011 7.011
16 C -0.049 4.049
17 C -0.217 4.217
18 C 0.271 3.729
19 O -0.366 6.366
20 H 0.075 0.925
21 H 0.190 0.810
22 H 0.176 0.824
23 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 7.590 -9.544 -1.996 12.356
hybrid contribution 0.129 0.783 -0.396 0.887
sum 7.719 -8.761 -2.393 11.919
Atomic orbital electron populations
1.70112 1.07225 1.27884 1.50765 1.25998 0.96532 1.01130 0.97268
0.84991 0.77553 0.76458 0.79430 1.19086 1.20368 1.18691 1.21063
0.90439 0.80340 1.53152 0.90507 1.83752 1.30205 1.10287 1.92191
1.19489 0.87176 0.89338 0.90588 1.21487 1.03627 0.97999 0.88021
1.98366 1.90780 1.82940 1.29632 1.21207 0.93999 0.91960 0.99328
1.20468 1.01832 0.92819 0.93567 1.98369 1.70429 1.33501 1.98836
1.21351 0.92726 0.92445 0.98400 1.21170 1.05070 0.99778 0.95687
1.23862 0.76186 0.87360 0.85500 1.90438 1.48154 1.62514 1.35473
0.92499 0.80983 0.82389 0.86833
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -52.40 13.67 21.62 0.30 -52.11 14
2 C -0.01 -0.65 5.49 84.86 0.47 -0.18 14
3 Si 0.99 41.04 29.55 68.60 2.03 43.07 14
4 H -0.27 -10.57 7.11 99.48 0.71 -9.86 14
5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 14
6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 14
7 C -0.37 -19.22 9.81 67.94 0.67 -18.55 14
8 H 0.08 3.77 7.76 -2.91 -0.02 3.75 14
9 O -0.25 -12.70 8.33 -19.31 -0.16 -12.86 14
10 C 0.18 7.49 5.60 23.00 0.13 7.61 14
11 C -0.08 -2.99 6.33 22.41 0.14 -2.85 14
12 Cl -0.05 -1.69 28.50 -2.72 -0.08 -1.77 14
13 C -0.05 -1.27 9.59 22.36 0.21 -1.06 14
14 C -0.06 -1.61 6.31 22.29 0.14 -1.47 14
15 Cl -0.04 -0.88 28.94 -2.72 -0.08 -0.96 14
16 C -0.03 -0.92 9.36 22.60 0.21 -0.70 14
17 C -0.21 -7.88 5.88 -20.06 -0.12 -8.00 14
18 C 0.41 15.59 11.18 70.05 0.78 16.37 14
19 O -0.49 -19.18 17.16 -3.10 -0.05 -19.24 14
20 H 0.27 14.30 8.31 -92.71 -0.77 13.53 14
21 H 0.17 3.73 8.06 -2.91 -0.02 3.71 14
22 H 0.16 4.33 7.65 -2.91 -0.02 4.30 14
23 H 0.12 4.60 7.64 -2.91 -0.02 4.58 14
Total: -1.00 -58.73 256.45 5.85 -52.88
By element:
Atomic # 1 Polarization: -1.45 SS G_CDS: 1.26 Total: -0.19 kcal
Atomic # 6 Polarization: -11.47 SS G_CDS: 2.64 Total: -8.83 kcal
Atomic # 7 Polarization: -52.40 SS G_CDS: 0.30 Total: -52.11 kcal
Atomic # 8 Polarization: -31.88 SS G_CDS: -0.21 Total: -32.09 kcal
Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal
Atomic # 17 Polarization: -2.57 SS G_CDS: -0.16 Total: -2.72 kcal
Total: -58.73 5.85 -52.88 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000035662306.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.415 kcal
(2) G-P(sol) polarization free energy of solvation -58.728 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.143 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.848 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.881 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.295 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds