Wall clock time and date at job start Mon Mar 30 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86803 * 119.99880 * 2 1 4 4 H 1.48491 * 109.47369 * 240.00390 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00185 * 3 2 1 7 7 C 1.38723 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99739 * 179.97438 * 7 2 1 9 9 O 1.34786 * 119.99908 * 0.27804 * 7 2 1 10 10 C 1.35477 * 117.00105 * 179.72546 * 9 7 2 11 11 C 1.38950 * 120.17190 * 269.72325 * 10 9 7 12 12 Cl 1.73596 * 119.95309 * 0.02562 * 11 10 9 13 13 C 1.38098 * 120.08708 * 179.74505 * 11 10 9 14 14 C 1.38755 * 120.44426 * 0.55337 * 13 11 10 15 15 Cl 1.73602 * 119.82411 * 179.72372 * 14 13 11 16 16 C 1.37821 * 120.34617 * 359.69820 * 14 13 11 17 17 C 1.39994 * 119.90449 * 0.02562 * 16 14 13 18 18 C 1.46765 * 120.21860 * 179.97438 * 17 16 14 19 19 O 1.21304 * 120.00018 * 0.02562 * 18 17 16 20 20 H 0.96996 * 120.00387 * 359.97438 * 1 2 3 21 21 H 1.08001 * 119.77567 * 180.29840 * 13 11 10 22 22 H 1.08003 * 120.04222 * 180.02562 * 16 14 13 23 23 H 1.07999 * 120.00137 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0087 -1.2014 -0.0005 8 1 3.0887 -1.2013 -0.0010 9 8 1.3348 -2.3686 -0.0067 10 6 2.0727 -3.5048 -0.0127 11 6 2.4482 -4.0873 -1.2170 12 17 1.9718 -3.3578 -2.7184 13 6 3.2048 -5.2426 -1.2210 14 6 3.5864 -5.8373 -0.0269 15 17 4.5314 -7.2934 -0.0508 16 6 3.2195 -5.2778 1.1781 17 6 2.4575 -4.1037 1.1992 18 6 2.0625 -3.5023 2.4784 19 8 2.3968 -4.0224 3.5220 20 1 -0.4850 0.8400 0.0004 21 1 3.4980 -5.6884 -2.1600 22 1 3.5196 -5.7446 2.1046 23 1 1.4742 -2.5967 2.4905 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035662306.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:03 Heat of formation + Delta-G solvation = -64.295464 kcal Electronic energy + Delta-G solvation = -14662.802216 eV Core-core repulsion = 11721.447854 eV Total energy + Delta-G solvation = -2941.354362 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 259.979 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.31616 -39.57832 -38.57935 -37.57154 -37.02620 -34.10070 -32.35325 -30.83425 -27.11716 -26.06240 -23.55798 -22.19935 -20.14339 -18.82558 -18.13830 -17.76907 -16.40089 -16.08309 -15.90365 -15.73391 -15.60497 -15.05995 -14.47046 -14.01068 -13.93357 -13.48691 -13.22149 -12.89147 -12.30109 -12.24355 -12.15374 -12.03750 -11.84966 -11.68108 -10.89433 -10.36580 -10.12013 -9.53407 -8.23896 -6.00801 -0.66997 -0.13763 0.77182 1.20649 1.27553 1.44876 1.49180 1.56055 2.20707 2.45821 3.10930 3.20250 3.34521 3.76097 3.93197 4.09717 4.21121 4.53288 4.75161 4.90336 4.95225 5.16739 5.29607 6.11403 6.28687 7.17822 7.86582 8.96577 Molecular weight = 259.98amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.007570 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.766589 B = 3698.068035 C = 4502.984165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.374 4.374 8 H 0.077 0.923 9 O -0.251 6.251 10 C 0.181 3.819 11 C -0.084 4.084 12 Cl -0.046 7.046 13 C -0.046 4.046 14 C -0.060 4.060 15 Cl -0.040 7.040 16 C -0.030 4.030 17 C -0.215 4.215 18 C 0.410 3.590 19 O -0.490 6.490 20 H 0.266 0.734 21 H 0.173 0.827 22 H 0.159 0.841 23 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.727 -9.344 -2.410 12.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.209 4.209 3 Si 0.816 3.184 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.450 4.450 8 H 0.095 0.905 9 O -0.164 6.164 10 C 0.134 3.866 11 C -0.111 4.111 12 Cl -0.017 7.017 13 C -0.065 4.065 14 C -0.087 4.087 15 Cl -0.011 7.011 16 C -0.049 4.049 17 C -0.217 4.217 18 C 0.271 3.729 19 O -0.366 6.366 20 H 0.075 0.925 21 H 0.190 0.810 22 H 0.176 0.824 23 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.590 -9.544 -1.996 12.356 hybrid contribution 0.129 0.783 -0.396 0.887 sum 7.719 -8.761 -2.393 11.919 Atomic orbital electron populations 1.70112 1.07225 1.27884 1.50765 1.25998 0.96532 1.01130 0.97268 0.84991 0.77553 0.76458 0.79430 1.19086 1.20368 1.18691 1.21063 0.90439 0.80340 1.53152 0.90507 1.83752 1.30205 1.10287 1.92191 1.19489 0.87176 0.89338 0.90588 1.21487 1.03627 0.97999 0.88021 1.98366 1.90780 1.82940 1.29632 1.21207 0.93999 0.91960 0.99328 1.20468 1.01832 0.92819 0.93567 1.98369 1.70429 1.33501 1.98836 1.21351 0.92726 0.92445 0.98400 1.21170 1.05070 0.99778 0.95687 1.23862 0.76186 0.87360 0.85500 1.90438 1.48154 1.62514 1.35473 0.92499 0.80983 0.82389 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.40 13.67 21.62 0.30 -52.11 14 2 C -0.01 -0.65 5.49 84.86 0.47 -0.18 14 3 Si 0.99 41.04 29.55 68.60 2.03 43.07 14 4 H -0.27 -10.57 7.11 99.48 0.71 -9.86 14 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 14 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 14 7 C -0.37 -19.22 9.81 67.94 0.67 -18.55 14 8 H 0.08 3.77 7.76 -2.91 -0.02 3.75 14 9 O -0.25 -12.70 8.33 -19.31 -0.16 -12.86 14 10 C 0.18 7.49 5.60 23.00 0.13 7.61 14 11 C -0.08 -2.99 6.33 22.41 0.14 -2.85 14 12 Cl -0.05 -1.69 28.50 -2.72 -0.08 -1.77 14 13 C -0.05 -1.27 9.59 22.36 0.21 -1.06 14 14 C -0.06 -1.61 6.31 22.29 0.14 -1.47 14 15 Cl -0.04 -0.88 28.94 -2.72 -0.08 -0.96 14 16 C -0.03 -0.92 9.36 22.60 0.21 -0.70 14 17 C -0.21 -7.88 5.88 -20.06 -0.12 -8.00 14 18 C 0.41 15.59 11.18 70.05 0.78 16.37 14 19 O -0.49 -19.18 17.16 -3.10 -0.05 -19.24 14 20 H 0.27 14.30 8.31 -92.71 -0.77 13.53 14 21 H 0.17 3.73 8.06 -2.91 -0.02 3.71 14 22 H 0.16 4.33 7.65 -2.91 -0.02 4.30 14 23 H 0.12 4.60 7.64 -2.91 -0.02 4.58 14 Total: -1.00 -58.73 256.45 5.85 -52.88 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: 1.26 Total: -0.19 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 2.64 Total: -8.83 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.30 Total: -52.11 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.21 Total: -32.09 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.16 Total: -2.72 kcal Total: -58.73 5.85 -52.88 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035662306.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.415 kcal (2) G-P(sol) polarization free energy of solvation -58.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds