Wall clock time and date at job start Mon Mar 30 2020 07:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50702 * 109.47070 * 119.99690 * 2 1 3 5 5 H 1.07998 * 120.00046 * 119.99838 * 4 2 1 6 6 C 1.37875 * 119.99889 * 300.00523 * 4 2 1 7 7 N 1.31522 * 120.00157 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00437 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47025 * 90.00144 * 8 6 4 10 10 H 1.48496 * 109.47665 * 210.00329 * 8 6 4 11 11 H 1.48504 * 109.46702 * 330.00878 * 8 6 4 12 12 O 1.42898 * 109.47356 * 239.99567 * 2 1 3 13 13 C 1.35919 * 116.99722 * 84.97604 * 12 2 1 14 14 C 1.38750 * 120.03972 * 354.56390 * 13 12 2 15 15 C 1.38134 * 119.98508 * 179.97438 * 14 13 12 16 16 C 1.38360 * 120.05321 * 359.97438 * 15 14 13 17 17 Cl 1.73596 * 119.96078 * 179.97438 * 16 15 14 18 18 C 1.38458 * 120.07631 * 0.02562 * 16 15 14 19 19 Cl 1.73592 * 119.99371 * 179.97438 * 18 16 15 20 20 C 1.38279 * 120.01414 * 359.74056 * 18 16 15 21 21 H 1.08995 * 109.47180 * 300.00078 * 1 2 3 22 22 H 1.08994 * 109.47151 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46503 * 60.00459 * 1 2 3 24 24 H 0.96994 * 120.00279 * 179.97438 * 7 6 4 25 25 H 1.07999 * 120.00686 * 359.97438 * 14 13 12 26 26 H 1.08000 * 119.97427 * 180.02562 * 15 14 13 27 27 H 1.08004 * 120.02445 * 180.26088 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1371 -0.8595 3.5567 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8744 2.6993 10 1 0.9769 1.9955 3.9070 11 1 0.8489 2.1772 1.4921 12 8 2.0064 -0.6737 -1.1667 13 6 2.1121 0.0625 -2.3043 14 6 1.6593 1.3738 -2.3277 15 6 1.7677 2.1211 -3.4844 16 6 2.3282 1.5633 -4.6197 17 17 2.4627 2.5044 -6.0722 18 6 2.7808 0.2549 -4.5991 19 17 3.4830 -0.4430 -6.0250 20 6 2.6781 -0.4943 -3.4414 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 -0.8901 24 1 1.9031 -0.5279 4.4376 25 1 1.2221 1.8101 -1.4418 26 1 1.4156 3.1419 -3.5022 27 1 3.0350 -1.5135 -3.4239 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038001430.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:28 Heat of formation + Delta-G solvation = -42.429066 kcal Electronic energy + Delta-G solvation = -14817.356948 eV Core-core repulsion = 12012.783878 eV Total energy + Delta-G solvation = -2804.573070 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.31260 -39.05601 -37.55626 -37.20285 -35.30372 -32.93940 -31.80298 -30.53787 -27.31234 -24.66346 -23.91848 -22.25813 -19.56443 -18.76772 -17.80633 -17.33392 -16.57091 -16.40854 -16.03409 -15.09707 -14.84850 -14.77232 -14.52534 -14.04506 -13.79465 -13.46933 -12.90981 -12.82535 -12.77605 -12.56728 -12.17550 -12.03384 -11.86993 -11.55502 -11.54372 -11.19215 -10.83522 -10.04423 -9.17356 -8.41641 -6.52235 -0.09652 0.08791 0.77067 1.12865 1.28965 1.33651 1.44849 2.22890 2.37120 2.47419 2.91552 3.60030 3.84900 4.01011 4.13896 4.23287 4.44585 4.48447 4.64529 4.67859 4.76336 4.95304 5.13826 5.30106 5.33405 5.44075 5.95499 6.51568 6.66132 7.12430 8.75081 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.038168 B = 0.005209 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.413272 B = 5373.519059 C = 5901.943514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.189 3.811 3 H 0.046 0.954 4 C -0.544 4.544 5 H 0.035 0.965 6 C 0.023 3.977 7 N -0.938 5.938 8 Si 0.949 3.051 9 H -0.256 1.256 10 H -0.290 1.290 11 H -0.234 1.234 12 O -0.317 6.317 13 C 0.143 3.857 14 C -0.203 4.203 15 C -0.046 4.046 16 C -0.084 4.084 17 Cl -0.048 7.048 18 C 0.008 3.992 19 Cl -0.040 7.040 20 C -0.153 4.153 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.274 0.726 25 H 0.151 0.849 26 H 0.173 0.827 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 8.477 -17.300 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.134 3.866 3 H 0.063 0.937 4 C -0.581 4.581 5 H 0.053 0.947 6 C -0.176 4.176 7 N -0.576 5.576 8 Si 0.773 3.227 9 H -0.181 1.181 10 H -0.217 1.217 11 H -0.157 1.157 12 O -0.230 6.230 13 C 0.095 3.905 14 C -0.221 4.221 15 C -0.064 4.064 16 C -0.111 4.111 17 Cl -0.019 7.019 18 C -0.020 4.020 19 Cl -0.011 7.011 20 C -0.173 4.173 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.168 0.832 26 H 0.190 0.810 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.435 8.266 -17.324 19.349 hybrid contribution -0.106 0.090 0.540 0.558 sum -2.540 8.356 -16.784 18.920 Atomic orbital electron populations 1.22616 0.96646 1.02697 1.01450 1.20464 0.91977 0.93453 0.80748 0.93655 1.20987 1.33181 1.14005 0.89960 0.94684 1.25747 0.97007 1.00496 0.94391 1.69996 1.46434 1.42245 0.98917 0.85865 0.79189 0.79018 0.78657 1.18117 1.21744 1.15682 1.86165 1.80212 1.39490 1.17149 1.19327 0.93003 0.90986 0.87140 1.21632 1.06068 0.93739 1.00706 1.21056 0.95274 1.01136 0.88960 1.20634 1.08039 0.91607 0.90842 1.98359 1.96903 1.71559 1.35062 1.20377 1.00079 0.92326 0.89239 1.98375 1.82103 1.84018 1.36615 1.20248 1.05129 1.02142 0.89731 0.92460 0.92248 0.90676 0.91660 0.83173 0.80978 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.78 8.65 71.98 0.62 -6.16 15 2 C 0.19 8.43 1.81 29.85 0.05 8.48 15 3 H 0.05 1.92 5.37 -2.39 -0.01 1.91 15 4 C -0.54 -30.65 9.47 25.60 0.24 -30.41 15 5 H 0.03 2.26 8.06 -2.91 -0.02 2.24 15 6 C 0.02 1.25 5.45 84.65 0.46 1.71 15 7 N -0.94 -56.47 13.96 21.45 0.30 -56.17 15 8 Si 0.95 40.27 24.37 68.60 1.67 41.94 15 9 H -0.26 -10.15 6.87 99.48 0.68 -9.47 15 10 H -0.29 -12.33 7.11 99.48 0.71 -11.62 15 11 H -0.23 -8.62 6.53 99.48 0.65 -7.97 15 12 O -0.32 -13.68 9.78 -92.64 -0.91 -14.59 15 13 C 0.14 4.94 6.60 22.50 0.15 5.09 15 14 C -0.20 -5.86 8.24 22.37 0.18 -5.68 15 15 C -0.05 -1.07 9.82 22.27 0.22 -0.86 15 16 C -0.08 -2.06 6.32 22.35 0.14 -1.92 15 17 Cl -0.05 -1.02 27.95 -2.72 -0.08 -1.10 15 18 C 0.01 0.20 6.32 22.33 0.14 0.34 15 19 Cl -0.04 -0.96 27.95 -2.72 -0.08 -1.04 15 20 C -0.15 -4.68 9.77 22.39 0.22 -4.46 15 21 H 0.06 2.17 3.27 -2.39 -0.01 2.17 15 22 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.07 2.32 6.91 -2.39 -0.02 2.31 15 24 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 25 H 0.15 4.21 5.43 -2.91 -0.02 4.20 15 26 H 0.17 2.91 8.06 -2.91 -0.02 2.88 15 27 H 0.15 4.38 8.06 -2.91 -0.02 4.35 15 Total: -1.00 -61.50 258.58 4.47 -57.03 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.13 Total: 7.78 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 2.43 Total: -33.86 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.30 Total: -56.17 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.91 Total: -14.59 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 1.67 Total: 41.94 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.15 Total: -2.13 kcal Total: -61.50 4.47 -57.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038001430.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.599 kcal (2) G-P(sol) polarization free energy of solvation -61.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds