Wall clock time and date at job start Mon Mar 30 2020 07:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47193 * 2 1 4 4 C 1.50699 * 109.47466 * 239.99625 * 2 1 3 5 5 H 1.07997 * 120.00191 * 245.32320 * 4 2 1 6 6 C 1.37877 * 119.99706 * 65.31875 * 4 2 1 7 7 N 1.31525 * 120.00039 * 5.48619 * 6 4 2 8 8 Si 1.86791 * 120.00083 * 185.48783 * 6 4 2 9 9 H 1.48508 * 109.47332 * 94.99811 * 8 6 4 10 10 H 1.48502 * 109.47268 * 214.99746 * 8 6 4 11 11 H 1.48498 * 109.47271 * 334.99917 * 8 6 4 12 12 O 1.42900 * 109.47298 * 119.99792 * 2 1 3 13 13 C 1.35930 * 117.00145 * 276.93415 * 12 2 1 14 14 C 1.38751 * 120.03338 * 356.28481 * 13 12 2 15 15 C 1.38136 * 119.97904 * 180.02562 * 14 13 12 16 16 C 1.38357 * 120.05606 * 359.75191 * 15 14 13 17 17 Cl 1.73597 * 119.96393 * 180.25318 * 16 15 14 18 18 C 1.38469 * 120.07239 * 0.50475 * 16 15 14 19 19 Cl 1.73596 * 119.98917 * 179.76610 * 18 16 15 20 20 C 1.38277 * 120.01532 * 359.49595 * 18 16 15 21 21 H 1.09000 * 109.46693 * 174.90055 * 1 2 3 22 22 H 1.09003 * 109.46814 * 294.90076 * 1 2 3 23 23 H 1.08996 * 109.47159 * 54.90252 * 1 2 3 24 24 H 0.96996 * 120.00192 * 180.02562 * 7 6 4 25 25 H 1.08000 * 120.00839 * 0.05063 * 14 13 12 26 26 H 1.08002 * 119.96977 * 180.02562 * 15 14 13 27 27 H 1.07993 * 120.02261 * 180.27717 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5806 -1.6359 -1.1336 6 6 1.7921 -0.1790 -2.4797 7 7 1.2203 0.9999 -2.5940 8 14 2.2787 -1.1332 -4.0100 9 1 1.1106 -1.9059 -4.5039 10 1 2.7264 -0.1861 -5.0625 11 1 3.3859 -2.0663 -3.6804 12 8 2.0064 -0.6736 1.1668 13 6 2.0742 0.0524 2.3140 14 6 1.7638 1.4046 2.2995 15 6 1.8336 2.1414 3.4659 16 6 2.2080 1.5310 4.6497 17 17 2.2887 2.4577 6.1154 18 6 2.5235 0.1828 4.6657 19 17 2.9988 -0.5796 6.1512 20 6 2.4545 -0.5576 3.4999 21 1 -0.3633 -1.0236 -0.0913 22 1 -0.3633 0.4327 0.9322 23 1 -0.3633 0.5909 -0.8408 24 1 1.0509 1.3737 -3.4728 25 1 1.4672 1.8809 1.3767 26 1 1.5916 3.1939 3.4545 27 1 2.6962 -1.6101 3.5132 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038001431.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:30 Heat of formation + Delta-G solvation = -37.881794 kcal Electronic energy + Delta-G solvation = -14735.269291 eV Core-core repulsion = 11930.893406 eV Total energy + Delta-G solvation = -2804.375885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.77917 -37.55201 -36.38595 -35.90015 -33.40767 -30.98100 -29.89504 -28.91657 -25.41980 -23.14600 -22.51065 -20.61040 -17.88667 -16.85153 -16.14170 -15.69446 -14.95780 -14.64278 -14.47245 -13.68585 -13.46120 -13.26508 -12.46641 -12.20920 -11.82807 -11.77489 -11.51594 -11.10845 -11.03819 -10.92153 -10.88607 -10.73283 -10.50360 -10.32677 -9.86749 -9.16269 -8.78305 -8.62455 -7.70929 -6.33891 -4.37678 1.22432 1.41653 1.97435 2.35595 3.17903 3.24774 3.28791 3.74571 4.02158 4.37968 4.84301 5.01869 5.25770 5.38273 5.47147 5.92590 5.95474 6.22596 6.37535 6.50354 6.56158 6.63176 6.77086 7.06279 7.45164 7.61141 7.90481 8.27338 8.72679 9.28136 10.75961 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.041640 B = 0.004706 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.262992 B = 5948.824576 C = 6382.292275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.044 0.956 4 C -0.521 4.521 5 H 0.070 0.930 6 C 0.066 3.934 7 N -0.890 5.890 8 Si 0.910 3.090 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.270 1.270 12 O -0.304 6.304 13 C 0.178 3.822 14 C -0.198 4.198 15 C -0.057 4.057 16 C -0.089 4.089 17 Cl -0.070 7.070 18 C 0.011 3.989 19 Cl -0.058 7.058 20 C -0.156 4.156 21 H 0.044 0.956 22 H 0.021 0.979 23 H 0.084 0.916 24 H 0.267 0.733 25 H 0.152 0.848 26 H 0.139 0.861 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 1.605 12.322 12.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.150 3.850 3 H 0.061 0.939 4 C -0.559 4.559 5 H 0.089 0.911 6 C -0.137 4.137 7 N -0.528 5.528 8 Si 0.737 3.263 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 O -0.216 6.216 13 C 0.129 3.871 14 C -0.217 4.217 15 C -0.076 4.076 16 C -0.117 4.117 17 Cl -0.041 7.041 18 C -0.017 4.017 19 Cl -0.029 7.029 20 C -0.176 4.176 21 H 0.063 0.937 22 H 0.040 0.960 23 H 0.103 0.897 24 H 0.077 0.923 25 H 0.170 0.830 26 H 0.157 0.843 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.800 1.542 12.372 12.494 hybrid contribution 0.122 -0.156 -0.682 0.710 sum 0.922 1.386 11.690 11.808 Atomic orbital electron populations 1.22259 0.98070 1.01322 1.00140 1.20454 0.91176 0.94064 0.79330 0.93874 1.20933 1.36882 1.09312 0.88733 0.91143 1.24874 0.94829 0.94878 0.99132 1.69920 1.42384 1.15805 1.24649 0.86269 0.78972 0.79565 0.81462 1.20327 1.20925 1.19496 1.86223 1.78493 1.40576 1.16319 1.19082 0.90338 0.89960 0.87735 1.21639 1.06398 0.93940 0.99762 1.20771 0.96836 1.00199 0.89752 1.20423 1.11609 0.90747 0.88921 1.98336 1.97280 1.73163 1.35329 1.20297 1.02220 0.91102 0.88067 1.98359 1.90222 1.81490 1.32877 1.20167 1.07561 1.01111 0.88734 0.93668 0.96002 0.89738 0.92297 0.83020 0.84333 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.03 37.16 0.34 -3.25 15 2 C 0.20 4.88 2.11 -27.88 -0.06 4.82 15 3 H 0.04 1.08 5.96 -51.93 -0.31 0.77 15 4 C -0.52 -13.81 8.82 -34.44 -0.30 -14.11 15 5 H 0.07 1.89 7.82 -52.49 -0.41 1.47 15 6 C 0.07 1.71 5.28 -17.81 -0.09 1.62 15 7 N -0.89 -23.71 12.00 55.43 0.67 -23.04 15 8 Si 0.91 20.28 29.54 -169.99 -5.02 15.26 15 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 12 O -0.30 -6.77 9.79 -19.52 -0.19 -6.96 15 13 C 0.18 3.36 6.50 -39.23 -0.25 3.11 15 14 C -0.20 -3.43 8.36 -39.43 -0.33 -3.76 15 15 C -0.06 -0.84 9.82 -39.57 -0.39 -1.23 15 16 C -0.09 -1.33 6.32 -39.45 -0.25 -1.58 15 17 Cl -0.07 -0.92 27.95 -51.86 -1.45 -2.37 15 18 C 0.01 0.16 6.32 -39.48 -0.25 -0.09 15 19 Cl -0.06 -0.79 27.95 -51.86 -1.45 -2.24 15 20 C -0.16 -2.59 9.77 -39.40 -0.38 -2.97 15 21 H 0.04 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.02 0.43 7.37 -51.93 -0.38 0.04 15 23 H 0.08 2.02 6.85 -51.93 -0.36 1.66 15 24 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 25 H 0.15 2.73 5.74 -52.49 -0.30 2.42 15 26 H 0.14 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.14 2.22 8.06 -52.49 -0.42 1.80 15 LS Contribution 267.20 15.07 4.03 4.03 Total: -1.00 -25.91 267.20 -7.56 -33.47 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -2.16 Total: -0.70 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -1.98 Total: -17.45 kcal Atomic # 7 Polarization: -23.71 SS G_CDS: 0.67 Total: -23.04 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.19 Total: -6.96 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -2.90 Total: -4.61 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.91 -7.56 -33.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038001431.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.409 kcal (2) G-P(sol) polarization free energy of solvation -25.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds