Wall clock time and date at job start Mon Mar 30 2020 07:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47193 * 2 1 4 4 C 1.50699 * 109.47466 * 239.99625 * 2 1 3 5 5 H 1.07997 * 120.00191 * 245.32320 * 4 2 1 6 6 C 1.37877 * 119.99706 * 65.31875 * 4 2 1 7 7 N 1.31525 * 120.00039 * 5.48619 * 6 4 2 8 8 Si 1.86791 * 120.00083 * 185.48783 * 6 4 2 9 9 H 1.48508 * 109.47332 * 94.99811 * 8 6 4 10 10 H 1.48502 * 109.47268 * 214.99746 * 8 6 4 11 11 H 1.48498 * 109.47271 * 334.99917 * 8 6 4 12 12 O 1.42900 * 109.47298 * 119.99792 * 2 1 3 13 13 C 1.35930 * 117.00145 * 276.93415 * 12 2 1 14 14 C 1.38751 * 120.03338 * 356.28481 * 13 12 2 15 15 C 1.38136 * 119.97904 * 180.02562 * 14 13 12 16 16 C 1.38357 * 120.05606 * 359.75191 * 15 14 13 17 17 Cl 1.73597 * 119.96393 * 180.25318 * 16 15 14 18 18 C 1.38469 * 120.07239 * 0.50475 * 16 15 14 19 19 Cl 1.73596 * 119.98917 * 179.76610 * 18 16 15 20 20 C 1.38277 * 120.01532 * 359.49595 * 18 16 15 21 21 H 1.09000 * 109.46693 * 174.90055 * 1 2 3 22 22 H 1.09003 * 109.46814 * 294.90076 * 1 2 3 23 23 H 1.08996 * 109.47159 * 54.90252 * 1 2 3 24 24 H 0.96996 * 120.00192 * 180.02562 * 7 6 4 25 25 H 1.08000 * 120.00839 * 0.05063 * 14 13 12 26 26 H 1.08002 * 119.96977 * 180.02562 * 15 14 13 27 27 H 1.07993 * 120.02261 * 180.27717 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5806 -1.6359 -1.1336 6 6 1.7921 -0.1790 -2.4797 7 7 1.2203 0.9999 -2.5940 8 14 2.2787 -1.1332 -4.0100 9 1 1.1106 -1.9059 -4.5039 10 1 2.7264 -0.1861 -5.0625 11 1 3.3859 -2.0663 -3.6804 12 8 2.0064 -0.6736 1.1668 13 6 2.0742 0.0524 2.3140 14 6 1.7638 1.4046 2.2995 15 6 1.8336 2.1414 3.4659 16 6 2.2080 1.5310 4.6497 17 17 2.2887 2.4577 6.1154 18 6 2.5235 0.1828 4.6657 19 17 2.9988 -0.5796 6.1512 20 6 2.4545 -0.5576 3.4999 21 1 -0.3633 -1.0236 -0.0913 22 1 -0.3633 0.4327 0.9322 23 1 -0.3633 0.5909 -0.8408 24 1 1.0509 1.3737 -3.4728 25 1 1.4672 1.8809 1.3767 26 1 1.5916 3.1939 3.4545 27 1 2.6962 -1.6101 3.5132 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038001431.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:30 Heat of formation + Delta-G solvation = -50.301660 kcal Electronic energy + Delta-G solvation = -14735.807857 eV Core-core repulsion = 11930.893406 eV Total energy + Delta-G solvation = -2804.914451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.20882 -38.96152 -37.54374 -37.16674 -35.30156 -32.43348 -31.48185 -30.37855 -27.37367 -24.61184 -23.88208 -22.22739 -19.35667 -18.66496 -17.57313 -17.20363 -16.41833 -16.34654 -15.95309 -15.08415 -14.83625 -14.70623 -14.12791 -13.66350 -13.48393 -13.12933 -12.89751 -12.78351 -12.76065 -12.47940 -12.36086 -12.12316 -12.01418 -11.83495 -11.44468 -11.02568 -10.58411 -10.02244 -9.11386 -8.31491 -6.42652 -0.06493 0.11983 0.78053 1.13828 1.42131 1.43231 1.54378 2.29278 2.42728 2.70615 3.02200 3.62959 3.91025 4.06628 4.20329 4.48832 4.65883 4.69203 4.76340 4.83384 4.97494 5.14577 5.29205 5.37509 5.56273 5.65156 5.99908 6.50927 6.80172 7.27543 8.77902 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.041640 B = 0.004706 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.262992 B = 5948.824576 C = 6382.292275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.208 3.792 3 H 0.029 0.971 4 C -0.549 4.549 5 H 0.058 0.942 6 C 0.026 3.974 7 N -0.912 5.912 8 Si 0.970 3.030 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.270 1.270 12 O -0.325 6.325 13 C 0.147 3.853 14 C -0.204 4.204 15 C -0.048 4.048 16 C -0.085 4.085 17 Cl -0.048 7.048 18 C 0.008 3.992 19 Cl -0.039 7.039 20 C -0.154 4.154 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.067 0.933 24 H 0.271 0.729 25 H 0.140 0.860 26 H 0.167 0.833 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.908 1.904 13.372 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.154 3.846 3 H 0.046 0.954 4 C -0.587 4.587 5 H 0.077 0.923 6 C -0.175 4.175 7 N -0.549 5.549 8 Si 0.795 3.205 9 H -0.196 1.196 10 H -0.202 1.202 11 H -0.194 1.194 12 O -0.239 6.239 13 C 0.099 3.901 14 C -0.223 4.223 15 C -0.066 4.066 16 C -0.113 4.113 17 Cl -0.019 7.019 18 C -0.019 4.019 19 Cl -0.010 7.010 20 C -0.173 4.173 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.158 0.842 26 H 0.185 0.815 27 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.940 1.848 13.452 13.610 hybrid contribution 0.115 -0.191 -0.798 0.829 sum 1.055 1.656 12.653 12.805 Atomic orbital electron populations 1.22069 0.97205 1.00763 1.00421 1.20183 0.91748 0.93008 0.79626 0.95352 1.21225 1.37599 1.09387 0.90478 0.92345 1.25624 0.94617 0.95641 1.01632 1.70000 1.42749 1.16724 1.25441 0.85348 0.78760 0.78396 0.78035 1.19586 1.20182 1.19431 1.86138 1.79659 1.41157 1.16909 1.19332 0.92691 0.90764 0.87288 1.21587 1.06853 0.93532 1.00309 1.20999 0.95606 1.01288 0.88738 1.20582 1.10093 0.90827 0.89759 1.98350 1.97095 1.72548 1.33926 1.20364 1.01746 0.91384 0.88440 1.98368 1.89954 1.81241 1.31398 1.20245 1.07007 1.01645 0.88405 0.94135 0.93912 0.91462 0.91978 0.84190 0.81549 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.68 9.03 71.98 0.65 -6.03 15 2 C 0.21 10.27 2.11 29.85 0.06 10.33 15 3 H 0.03 1.48 5.96 -2.39 -0.01 1.46 15 4 C -0.55 -29.79 8.82 25.60 0.23 -29.56 15 5 H 0.06 3.21 7.82 -2.91 -0.02 3.19 15 6 C 0.03 1.34 5.28 84.65 0.45 1.79 15 7 N -0.91 -48.99 12.00 21.45 0.26 -48.74 15 8 Si 0.97 41.59 29.54 68.60 2.03 43.62 15 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 10 H -0.28 -11.46 7.11 99.48 0.71 -10.76 15 11 H -0.27 -11.43 7.11 99.48 0.71 -10.73 15 12 O -0.33 -14.84 9.79 -92.76 -0.91 -15.75 15 13 C 0.15 5.56 6.50 22.50 0.15 5.71 15 14 C -0.20 -6.97 8.36 22.37 0.19 -6.79 15 15 C -0.05 -1.33 9.82 22.27 0.22 -1.11 15 16 C -0.08 -2.33 6.32 22.35 0.14 -2.19 15 17 Cl -0.05 -1.13 27.95 -2.72 -0.08 -1.21 15 18 C 0.01 0.24 6.32 22.33 0.14 0.38 15 19 Cl -0.04 -0.96 27.95 -2.72 -0.08 -1.04 15 20 C -0.15 -4.97 9.77 22.38 0.22 -4.75 15 21 H 0.04 1.82 8.14 -2.39 -0.02 1.80 15 22 H 0.04 1.70 7.37 -2.39 -0.02 1.68 15 23 H 0.07 3.26 6.85 -2.39 -0.02 3.25 15 24 H 0.27 13.70 8.31 -92.71 -0.77 12.93 15 25 H 0.14 5.12 5.74 -2.91 -0.02 5.10 15 26 H 0.17 3.63 8.06 -2.91 -0.02 3.61 15 27 H 0.15 4.58 8.06 -2.91 -0.02 4.56 15 Total: -1.00 -54.62 267.20 4.86 -49.76 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.20 Total: 5.57 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 2.44 Total: -32.22 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.26 Total: -48.74 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.91 Total: -15.75 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.15 Total: -2.24 kcal Total: -54.62 4.86 -49.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038001431.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.537 kcal (2) G-P(sol) polarization free energy of solvation -54.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds