Wall clock time and date at job start Mon Mar 30 2020 07:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30490 * 1 3 3 Si 1.86803 * 120.00413 * 2 1 4 4 H 1.48498 * 109.46861 * 274.99644 * 3 2 1 5 5 H 1.48505 * 109.46859 * 34.99600 * 3 2 1 6 6 H 1.48498 * 109.46908 * 154.99539 * 3 2 1 7 7 C 1.40427 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99921 * 174.92411 * 7 2 1 9 9 C 1.41357 * 119.99984 * 355.20059 * 7 2 1 10 10 O 1.21949 * 119.99783 * 4.81040 * 9 7 2 11 11 C 1.47229 * 119.99731 * 184.81556 * 9 7 2 12 12 C 1.39483 * 120.62039 * 354.29571 * 11 9 7 13 13 C 1.38400 * 120.58128 * 180.02562 * 12 11 9 14 14 C 1.37717 * 121.67304 * 0.02562 * 13 12 11 15 15 Cl 1.73604 * 119.72686 * 179.97438 * 14 13 12 16 16 C 1.40716 * 120.55058 * 359.95416 * 14 13 12 17 17 C 1.40477 * 121.26781 * 179.97438 * 16 14 13 18 18 C 1.36405 * 119.63652 * 180.02562 * 17 16 14 19 19 C 1.39078 * 120.96246 * 0.02562 * 18 17 16 20 20 C 1.36608 * 120.88471 * 0.02562 * 19 18 17 21 21 C 1.39877 * 119.64339 * 359.68496 * 20 19 18 22 22 H 0.97001 * 119.99278 * 0.02562 * 1 2 3 23 23 H 1.07995 * 119.71386 * 0.02911 * 12 11 9 24 24 H 1.07999 * 119.16049 * 180.02562 * 13 12 11 25 25 H 1.08003 * 120.18155 * 0.04582 * 17 16 14 26 26 H 1.07999 * 119.51911 * 179.97438 * 18 17 16 27 27 H 1.08000 * 119.55809 * 179.97438 * 19 18 17 28 28 H 1.08008 * 120.17881 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 2.3809 2.1073 -1.3948 5 1 1.4933 2.6199 0.8030 6 1 3.5853 1.4118 0.5918 7 6 2.0070 -1.2162 0.0005 8 1 3.0838 -1.2181 -0.0822 9 6 1.3038 -2.4381 0.1035 10 8 0.0843 -2.4417 0.1035 11 6 2.0438 -3.7064 0.2109 12 6 3.4335 -3.7302 0.0937 13 6 4.1283 -4.9230 0.1943 14 6 3.4825 -6.1199 0.4111 15 17 4.4042 -7.5864 0.5282 16 6 2.0819 -6.1641 0.5388 17 6 1.4078 -7.3766 0.7596 18 6 0.0488 -7.3810 0.8779 19 6 -0.6815 -6.2012 0.7825 20 6 -0.0571 -5.0054 0.5672 21 6 1.3359 -4.9640 0.4473 22 1 -0.4849 0.8401 -0.0004 23 1 3.9722 -2.8099 -0.0770 24 1 5.2042 -4.9148 0.1004 25 1 1.9624 -8.3002 0.8356 26 1 -0.4675 -8.3143 1.0472 27 1 -1.7568 -6.2310 0.8792 28 1 -0.6356 -4.0962 0.4947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038284350.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:30 Heat of formation + Delta-G solvation = -7.799455 kcal Electronic energy + Delta-G solvation = -16202.061374 eV Core-core repulsion = 13401.422807 eV Total energy + Delta-G solvation = -2800.638567 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 260.034 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.66348 -36.85587 -36.48341 -35.29961 -32.95242 -31.44005 -29.90864 -29.07088 -26.64235 -23.45093 -22.35648 -21.98179 -19.74800 -17.47157 -16.49028 -16.15185 -15.88805 -15.31404 -14.33268 -14.03931 -13.54252 -13.30686 -13.07912 -12.83650 -12.40723 -12.19340 -11.82509 -11.70683 -11.38029 -11.17334 -10.94709 -10.76303 -10.55036 -10.47369 -10.36525 -10.12410 -9.19407 -8.96416 -8.20907 -7.54143 -7.20498 -6.47335 -5.09802 0.81136 1.50229 2.37350 2.44068 2.94706 3.04160 3.07660 3.33215 3.87181 4.15820 4.61214 5.08880 5.20973 5.32388 5.52497 5.59023 5.66515 5.74595 5.83032 6.03942 6.23772 6.38500 6.49661 6.65651 6.77294 6.85902 7.01309 7.06364 7.20707 7.37623 7.50138 7.86801 8.57904 8.63697 10.10707 10.32538 Molecular weight = 260.03amu Principal moments of inertia in cm(-1) A = 0.026314 B = 0.006392 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.806865 B = 4379.528933 C = 5423.263188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.501 4.501 8 H 0.078 0.922 9 C 0.381 3.619 10 O -0.537 6.537 11 C -0.064 4.064 12 C -0.113 4.113 13 C -0.095 4.095 14 C -0.051 4.051 15 Cl -0.087 7.087 16 C -0.045 4.045 17 C -0.129 4.129 18 C -0.111 4.111 19 C -0.145 4.145 20 C -0.083 4.083 21 C -0.035 4.035 22 H 0.277 0.723 23 H 0.140 0.860 24 H 0.125 0.875 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.849 -8.158 0.999 9.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.148 4.148 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.531 4.531 8 H 0.096 0.904 9 C 0.279 3.721 10 O -0.429 6.429 11 C -0.065 4.065 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.078 4.078 15 Cl -0.059 7.059 16 C -0.046 4.046 17 C -0.147 4.147 18 C -0.129 4.129 19 C -0.163 4.163 20 C -0.100 4.100 21 C -0.036 4.036 22 H 0.089 0.911 23 H 0.158 0.842 24 H 0.143 0.857 25 H 0.141 0.859 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.181 -8.249 1.015 9.304 hybrid contribution 0.820 0.443 0.024 0.932 sum 5.001 -7.806 1.039 9.329 Atomic orbital electron populations 1.69926 1.07652 1.28574 1.28923 1.26044 0.94716 1.01224 0.92769 0.86299 0.80633 0.80607 0.79197 1.19310 1.19926 1.18269 1.20918 0.95453 0.91568 1.45179 0.90391 1.17851 0.88528 0.85424 0.80287 1.90348 1.14771 1.87018 1.50766 1.23276 0.94006 0.96046 0.93205 1.21428 0.93830 0.97115 1.00822 1.20865 0.99984 0.90948 0.99562 1.20911 0.90724 0.86940 1.09178 1.98300 1.73597 1.37144 1.96835 1.17771 0.91040 0.94066 1.01673 1.20937 0.94687 0.96542 1.02550 1.20815 0.94046 0.98089 0.99956 1.21010 0.99892 0.92719 1.02687 1.22394 0.94024 1.00463 0.93119 1.19134 0.93758 0.91070 0.99624 0.91141 0.84191 0.85659 0.85907 0.86664 0.86368 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.47 11.74 55.57 0.65 -18.82 15 2 C 0.08 1.95 5.50 -17.30 -0.10 1.85 15 3 Si 0.91 18.10 29.57 -169.99 -5.03 13.07 15 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 5 H -0.27 -5.37 7.11 56.52 0.40 -4.96 15 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 7 C -0.50 -12.89 8.85 -37.57 -0.33 -13.22 15 8 H 0.08 1.80 6.06 -52.49 -0.32 1.48 15 9 C 0.38 10.16 6.86 -34.75 -0.24 9.92 15 10 O -0.54 -15.70 12.12 4.97 0.06 -15.64 15 11 C -0.06 -1.47 6.06 -102.57 -0.62 -2.09 15 12 C -0.11 -2.21 9.43 -39.06 -0.37 -2.58 15 13 C -0.09 -1.62 9.70 -39.71 -0.39 -2.00 15 14 C -0.05 -0.89 6.36 -38.84 -0.25 -1.14 15 15 Cl -0.09 -1.28 27.44 -51.86 -1.42 -2.70 15 16 C -0.04 -0.86 5.74 -106.84 -0.61 -1.47 15 17 C -0.13 -2.16 9.44 -39.40 -0.37 -2.53 15 18 C -0.11 -1.75 9.95 -39.93 -0.40 -2.15 15 19 C -0.14 -2.53 9.96 -39.86 -0.40 -2.93 15 20 C -0.08 -1.76 9.28 -39.56 -0.37 -2.13 15 21 C -0.04 -0.77 5.90 -104.79 -0.62 -1.39 15 22 H 0.28 6.68 8.29 -40.82 -0.34 6.34 15 23 H 0.14 2.53 6.23 -52.49 -0.33 2.21 15 24 H 0.13 1.76 8.06 -52.49 -0.42 1.33 15 25 H 0.12 1.80 6.95 -52.48 -0.36 1.43 15 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.12 1.75 8.06 -52.49 -0.42 1.33 15 28 H 0.18 4.16 5.04 -52.48 -0.26 3.90 15 LS Contribution 261.96 15.07 3.95 3.95 Total: -1.00 -28.84 261.96 -8.52 -37.36 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -1.68 Total: 4.63 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -5.05 Total: -21.86 kcal Atomic # 7 Polarization: -19.47 SS G_CDS: 0.65 Total: -18.82 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.06 Total: -15.64 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.42 Total: -2.70 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.84 -8.52 -37.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038284350.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.564 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds