Wall clock time and date at job start Mon Mar 30 2020 07:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30490 * 1 3 3 Si 1.86803 * 120.00413 * 2 1 4 4 H 1.48498 * 109.46861 * 274.99644 * 3 2 1 5 5 H 1.48505 * 109.46859 * 34.99600 * 3 2 1 6 6 H 1.48498 * 109.46908 * 154.99539 * 3 2 1 7 7 C 1.40427 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99921 * 174.92411 * 7 2 1 9 9 C 1.41357 * 119.99984 * 355.20059 * 7 2 1 10 10 O 1.21949 * 119.99783 * 4.81040 * 9 7 2 11 11 C 1.47229 * 119.99731 * 184.81556 * 9 7 2 12 12 C 1.39483 * 120.62039 * 354.29571 * 11 9 7 13 13 C 1.38400 * 120.58128 * 180.02562 * 12 11 9 14 14 C 1.37717 * 121.67304 * 0.02562 * 13 12 11 15 15 Cl 1.73604 * 119.72686 * 179.97438 * 14 13 12 16 16 C 1.40716 * 120.55058 * 359.95416 * 14 13 12 17 17 C 1.40477 * 121.26781 * 179.97438 * 16 14 13 18 18 C 1.36405 * 119.63652 * 180.02562 * 17 16 14 19 19 C 1.39078 * 120.96246 * 0.02562 * 18 17 16 20 20 C 1.36608 * 120.88471 * 0.02562 * 19 18 17 21 21 C 1.39877 * 119.64339 * 359.68496 * 20 19 18 22 22 H 0.97001 * 119.99278 * 0.02562 * 1 2 3 23 23 H 1.07995 * 119.71386 * 0.02911 * 12 11 9 24 24 H 1.07999 * 119.16049 * 180.02562 * 13 12 11 25 25 H 1.08003 * 120.18155 * 0.04582 * 17 16 14 26 26 H 1.07999 * 119.51911 * 179.97438 * 18 17 16 27 27 H 1.08000 * 119.55809 * 179.97438 * 19 18 17 28 28 H 1.08008 * 120.17881 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 2.3809 2.1073 -1.3948 5 1 1.4933 2.6199 0.8030 6 1 3.5853 1.4118 0.5918 7 6 2.0070 -1.2162 0.0005 8 1 3.0838 -1.2181 -0.0822 9 6 1.3038 -2.4381 0.1035 10 8 0.0843 -2.4417 0.1035 11 6 2.0438 -3.7064 0.2109 12 6 3.4335 -3.7302 0.0937 13 6 4.1283 -4.9230 0.1943 14 6 3.4825 -6.1199 0.4111 15 17 4.4042 -7.5864 0.5282 16 6 2.0819 -6.1641 0.5388 17 6 1.4078 -7.3766 0.7596 18 6 0.0488 -7.3810 0.8779 19 6 -0.6815 -6.2012 0.7825 20 6 -0.0571 -5.0054 0.5672 21 6 1.3359 -4.9640 0.4473 22 1 -0.4849 0.8401 -0.0004 23 1 3.9722 -2.8099 -0.0770 24 1 5.2042 -4.9148 0.1004 25 1 1.9624 -8.3002 0.8356 26 1 -0.4675 -8.3143 1.0472 27 1 -1.7568 -6.2310 0.8792 28 1 -0.6356 -4.0962 0.4947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038284350.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:29 Heat of formation + Delta-G solvation = -23.137623 kcal Electronic energy + Delta-G solvation = -16202.726487 eV Core-core repulsion = 13401.422807 eV Total energy + Delta-G solvation = -2801.303680 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 260.034 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14289 -38.69452 -37.82039 -36.77302 -34.87240 -32.97617 -31.35365 -30.66989 -28.44589 -25.01955 -23.80634 -23.53354 -21.46694 -19.08112 -17.99928 -17.77782 -17.51166 -16.84581 -16.00328 -15.47998 -15.05563 -14.93924 -14.55341 -14.34796 -14.03289 -13.85594 -13.43260 -13.07578 -13.01305 -12.77186 -12.48805 -12.25914 -12.10705 -11.99800 -11.81503 -11.59579 -11.01633 -10.50497 -9.63130 -9.47676 -8.70832 -8.36056 -7.10620 -0.68564 0.06614 0.87203 1.06451 1.37739 1.39332 1.56222 1.84901 2.19446 2.39964 3.04300 3.66328 3.75357 3.81220 3.91491 4.15026 4.21953 4.36329 4.47428 4.60112 4.75981 4.91098 5.03449 5.16381 5.23345 5.34018 5.40403 5.56349 5.72061 5.84902 5.92752 6.08524 6.64898 6.74363 8.20726 8.43844 Molecular weight = 260.03amu Principal moments of inertia in cm(-1) A = 0.026314 B = 0.006392 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.806865 B = 4379.528933 C = 5423.263188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.025 3.975 3 Si 0.995 3.005 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.098 0.902 9 C 0.360 3.640 10 O -0.581 6.581 11 C -0.120 4.120 12 C -0.095 4.095 13 C -0.100 4.100 14 C -0.038 4.038 15 Cl -0.051 7.051 16 C -0.065 4.065 17 C -0.121 4.121 18 C -0.107 4.107 19 C -0.127 4.127 20 C -0.129 4.129 21 C -0.052 4.052 22 H 0.284 0.716 23 H 0.149 0.851 24 H 0.164 0.836 25 H 0.152 0.848 26 H 0.162 0.838 27 H 0.142 0.858 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.223 -10.153 1.298 12.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.196 4.196 3 Si 0.813 3.187 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.167 1.167 7 C -0.561 4.561 8 H 0.116 0.884 9 C 0.261 3.739 10 O -0.477 6.477 11 C -0.121 4.121 12 C -0.113 4.113 13 C -0.118 4.118 14 C -0.065 4.065 15 Cl -0.022 7.022 16 C -0.066 4.066 17 C -0.138 4.138 18 C -0.124 4.124 19 C -0.145 4.145 20 C -0.147 4.147 21 C -0.053 4.053 22 H 0.095 0.905 23 H 0.167 0.833 24 H 0.181 0.819 25 H 0.170 0.830 26 H 0.180 0.820 27 H 0.160 0.840 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.575 -10.268 1.313 12.263 hybrid contribution 0.095 0.803 -0.052 0.810 sum 6.670 -9.465 1.262 11.647 Atomic orbital electron populations 1.70065 1.09953 1.30103 1.30422 1.27262 0.95502 1.05490 0.91298 0.85035 0.79331 0.74719 0.79612 1.18336 1.19389 1.16710 1.21406 0.96621 0.92136 1.45971 0.88370 1.18497 0.88452 0.87631 0.79342 1.90321 1.16542 1.88304 1.52484 1.22965 0.95490 0.95336 0.98349 1.21586 0.92483 0.98730 0.98515 1.21138 1.01644 0.89767 0.99255 1.21103 0.90552 0.88505 1.06343 1.98316 1.72516 1.34907 1.96496 1.18007 0.92012 0.93988 1.02606 1.21329 0.95359 0.96454 1.00675 1.21247 0.93886 0.98898 0.98392 1.21325 1.01293 0.92038 0.99811 1.22114 0.94359 1.00743 0.97467 1.19253 0.94134 0.91771 1.00124 0.90540 0.83305 0.81874 0.83043 0.82038 0.83997 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.39 11.74 21.90 0.26 -44.13 15 2 C 0.02 1.28 5.50 85.43 0.47 1.75 15 3 Si 0.99 37.68 29.57 68.60 2.03 39.71 15 4 H -0.26 -9.35 7.11 99.48 0.71 -8.64 15 5 H -0.27 -9.86 7.11 99.48 0.71 -9.15 15 6 H -0.24 -8.57 7.11 99.48 0.71 -7.86 15 7 C -0.53 -28.63 8.85 23.57 0.21 -28.42 15 8 H 0.10 4.64 6.06 -2.91 -0.02 4.62 15 9 C 0.36 20.63 6.86 25.40 0.17 20.80 15 10 O -0.58 -37.18 12.12 -5.15 -0.06 -37.24 15 11 C -0.12 -5.81 6.06 -18.53 -0.11 -5.92 15 12 C -0.09 -3.70 9.43 22.61 0.21 -3.48 15 13 C -0.10 -3.19 9.70 22.19 0.22 -2.97 15 14 C -0.04 -1.24 6.36 22.75 0.14 -1.10 15 15 Cl -0.05 -1.30 27.44 -2.72 -0.07 -1.37 15 16 C -0.07 -2.42 5.74 -21.30 -0.12 -2.55 15 17 C -0.12 -3.65 9.44 22.39 0.21 -3.44 15 18 C -0.11 -3.02 9.95 22.04 0.22 -2.80 15 19 C -0.13 -4.36 9.96 22.09 0.22 -4.14 15 20 C -0.13 -5.82 9.28 22.29 0.21 -5.61 15 21 C -0.05 -2.36 5.90 -19.97 -0.12 -2.48 15 22 H 0.28 14.46 8.29 -92.71 -0.77 13.70 15 23 H 0.15 5.35 6.23 -2.91 -0.02 5.33 15 24 H 0.16 3.93 8.06 -2.91 -0.02 3.90 15 25 H 0.15 3.69 6.95 -2.91 -0.02 3.67 15 26 H 0.16 3.12 8.06 -2.91 -0.02 3.10 15 27 H 0.14 4.06 8.06 -2.91 -0.02 4.04 15 28 H 0.14 7.20 5.04 -2.91 -0.01 7.19 15 Total: -1.00 -68.78 261.96 5.29 -63.49 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.21 Total: 19.89 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 1.93 Total: -40.35 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.26 Total: -44.13 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.06 Total: -37.24 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.07 Total: -1.37 kcal Total: -68.78 5.29 -63.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038284350.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.355 kcal (2) G-P(sol) polarization free energy of solvation -68.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds