Wall clock time and date at job start Mon Mar 30 2020 07:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48497 * 109.47375 * 270.00363 * 3 2 1 5 5 H 1.48500 * 109.47095 * 30.00524 * 3 2 1 6 6 H 1.48505 * 109.46705 * 150.00180 * 3 2 1 7 7 C 1.37878 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00115 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47171 * 300.00618 * 9 7 2 11 11 O 1.42902 * 109.46962 * 60.00241 * 9 7 2 12 12 C 1.53000 * 109.47308 * 180.02562 * 9 7 2 13 13 O 1.42896 * 109.47014 * 175.00199 * 12 9 7 14 14 C 1.35969 * 116.99875 * 180.02562 * 13 12 9 15 15 C 1.38682 * 120.03401 * 359.97438 * 14 13 12 16 16 C 1.38164 * 119.98275 * 179.71841 * 15 14 13 17 17 C 1.38464 * 120.04846 * 0.28390 * 16 15 14 18 18 F 1.35100 * 119.96376 * 179.97438 * 17 16 15 19 19 C 1.38435 * 120.06972 * 0.02562 * 17 16 15 20 20 C 1.38256 * 120.02049 * 0.02562 * 19 17 16 21 21 Cl 1.73593 * 120.02850 * 179.97438 * 20 19 17 22 22 H 0.97000 * 119.99794 * 359.97438 * 1 2 3 23 23 H 0.96699 * 113.99908 * 59.99780 * 11 9 7 24 24 H 1.09001 * 109.47003 * 55.00074 * 12 9 7 25 25 H 1.09000 * 109.47132 * 295.00344 * 12 9 7 26 26 H 1.08002 * 120.01147 * 0.02562 * 15 14 13 27 27 H 1.07997 * 119.97329 * 180.29890 * 16 15 14 28 28 H 1.07999 * 119.99121 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4290 -2.5747 -1.1671 12 6 2.2452 -3.6622 -0.0005 13 8 1.5345 -4.8963 0.1168 14 6 2.2756 -6.0362 0.1329 15 6 3.6574 -5.9672 0.0371 16 6 4.4097 -7.1258 0.0594 17 6 3.7848 -8.3563 0.1714 18 9 4.5221 -9.4882 0.1925 19 6 2.4052 -8.4280 0.2607 20 6 1.6494 -7.2705 0.2376 21 17 -0.0806 -7.3602 0.3489 22 1 -0.4850 0.8401 0.0004 23 1 0.9208 -2.5291 -1.9984 24 1 2.9293 -3.5553 0.8413 25 1 2.8114 -3.6561 -0.9319 26 1 4.1456 -5.0078 -0.0499 27 1 5.4861 -7.0716 -0.0104 28 1 1.9190 -9.3885 0.3476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041251891.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:01 Heat of formation + Delta-G solvation = -119.829600 kcal Electronic energy + Delta-G solvation = -16675.858318 eV Core-core repulsion = 13439.592535 eV Total energy + Delta-G solvation = -3236.265784 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.91695 -39.98058 -37.40563 -36.26042 -35.40370 -32.26382 -31.12412 -29.90333 -28.49964 -25.32932 -23.24867 -22.34417 -20.82674 -18.41112 -17.58699 -16.89467 -16.55791 -15.86916 -15.41433 -14.98441 -14.74546 -14.66191 -14.25879 -13.70956 -13.51179 -13.26022 -12.82860 -12.38494 -12.19071 -11.38210 -11.29123 -11.09913 -11.02252 -10.93566 -10.75625 -10.44623 -10.20285 -9.19583 -9.09696 -8.73927 -8.37155 -7.98828 -6.15889 -4.37380 0.90938 1.11285 2.17409 3.19599 3.25981 3.28184 3.38815 3.48071 4.22175 4.28706 4.60817 4.73748 5.02426 5.11763 5.27565 5.49400 5.71331 5.72238 5.77928 5.97531 6.04316 6.22106 6.41581 6.57786 7.45492 7.58405 7.71466 7.94350 8.65204 9.24953 9.41234 10.88622 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.031624 B = 0.004839 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.185766 B = 5784.846365 C = 6559.176999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.082 3.918 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.579 4.579 8 H 0.059 0.941 9 C 0.237 3.763 10 H 0.068 0.932 11 O -0.556 6.556 12 C 0.029 3.971 13 O -0.287 6.287 14 C 0.147 3.853 15 C -0.177 4.177 16 C -0.105 4.105 17 C 0.054 3.946 18 F -0.140 7.140 19 C -0.108 4.108 20 C -0.054 4.054 21 Cl -0.043 7.043 22 H 0.264 0.736 23 H 0.345 0.655 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.149 0.851 27 H 0.140 0.860 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 -13.755 -0.025 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.126 4.126 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.617 4.617 8 H 0.078 0.922 9 C 0.179 3.821 10 H 0.085 0.915 11 O -0.358 6.358 12 C -0.046 4.046 13 O -0.199 6.199 14 C 0.098 3.902 15 C -0.196 4.196 16 C -0.124 4.124 17 C 0.035 3.965 18 F -0.119 7.119 19 C -0.127 4.127 20 C -0.082 4.082 21 Cl -0.014 7.014 22 H 0.074 0.926 23 H 0.189 0.811 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.167 0.833 27 H 0.158 0.842 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.698 -13.687 0.469 14.833 hybrid contribution 1.249 0.820 -0.350 1.534 sum 6.946 -12.867 0.119 14.623 Atomic orbital electron populations 1.70084 1.06009 1.26901 1.45686 1.25016 0.94766 0.99306 0.93481 0.86553 0.79845 0.82950 0.78345 1.20351 1.20919 1.19712 1.21394 0.93174 0.90604 1.56494 0.92249 1.19459 0.88111 0.87228 0.87283 0.91462 1.86633 1.37961 1.96109 1.15104 1.24344 0.98151 0.81799 1.00303 1.86397 1.35359 1.12597 1.85511 1.18980 0.90060 0.87363 0.93808 1.21202 0.92090 0.99879 1.06440 1.21007 1.01042 0.90464 0.99890 1.17229 0.88568 0.82355 1.08364 1.91484 1.76681 1.49213 1.94539 1.20745 0.91900 0.98280 1.01811 1.19878 0.86372 0.91578 1.10374 1.98386 1.08025 1.98510 1.96524 0.92619 0.81112 0.91967 0.92589 0.83348 0.84167 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.47 12.84 55.43 0.71 -23.75 15 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 15 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 15 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.01 7.11 56.52 0.40 -5.60 15 7 C -0.58 -15.02 8.76 -34.44 -0.30 -15.32 15 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 15 9 C 0.24 5.81 3.10 -27.88 -0.09 5.73 15 10 H 0.07 1.84 8.14 -51.93 -0.42 1.42 15 11 O -0.56 -14.13 12.70 -40.06 -0.51 -14.63 15 12 C 0.03 0.55 4.31 37.16 0.16 0.71 15 13 O -0.29 -5.50 9.56 -24.47 -0.23 -5.74 15 14 C 0.15 2.36 6.68 -39.21 -0.26 2.09 15 15 C -0.18 -2.39 9.04 -39.44 -0.36 -2.74 15 16 C -0.11 -1.24 10.02 -39.53 -0.40 -1.63 15 17 C 0.05 0.67 7.30 -39.43 -0.29 0.39 15 18 F -0.14 -1.72 17.27 2.25 0.04 -1.68 15 19 C -0.11 -1.35 9.80 -39.50 -0.39 -1.74 15 20 C -0.05 -0.81 6.33 -39.37 -0.25 -1.06 15 21 Cl -0.04 -0.66 28.50 -51.86 -1.48 -2.14 15 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 23 H 0.35 7.62 9.04 45.56 0.41 8.03 15 24 H 0.06 1.12 7.66 -51.93 -0.40 0.72 15 25 H 0.06 0.99 7.66 -51.93 -0.40 0.59 15 26 H 0.15 1.84 6.30 -52.49 -0.33 1.51 15 27 H 0.14 1.29 8.06 -52.49 -0.42 0.86 15 28 H 0.15 1.52 8.06 -52.49 -0.42 1.10 15 LS Contribution 273.44 15.07 4.12 4.12 Total: -1.00 -29.23 273.44 -6.16 -35.38 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -1.52 Total: 4.69 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.26 Total: -11.47 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.71 Total: -23.75 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.74 Total: -20.37 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.48 Total: -2.14 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.23 -6.16 -35.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251891.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.445 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds