Wall clock time and date at job start Mon Mar 30 2020 07:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48497 * 109.47375 * 270.00363 * 3 2 1 5 5 H 1.48500 * 109.47095 * 30.00524 * 3 2 1 6 6 H 1.48505 * 109.46705 * 150.00180 * 3 2 1 7 7 C 1.37878 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00115 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47171 * 300.00618 * 9 7 2 11 11 O 1.42902 * 109.46962 * 60.00241 * 9 7 2 12 12 C 1.53000 * 109.47308 * 180.02562 * 9 7 2 13 13 O 1.42896 * 109.47014 * 175.00199 * 12 9 7 14 14 C 1.35969 * 116.99875 * 180.02562 * 13 12 9 15 15 C 1.38682 * 120.03401 * 359.97438 * 14 13 12 16 16 C 1.38164 * 119.98275 * 179.71841 * 15 14 13 17 17 C 1.38464 * 120.04846 * 0.28390 * 16 15 14 18 18 F 1.35100 * 119.96376 * 179.97438 * 17 16 15 19 19 C 1.38435 * 120.06972 * 0.02562 * 17 16 15 20 20 C 1.38256 * 120.02049 * 0.02562 * 19 17 16 21 21 Cl 1.73593 * 120.02850 * 179.97438 * 20 19 17 22 22 H 0.97000 * 119.99794 * 359.97438 * 1 2 3 23 23 H 0.96699 * 113.99908 * 59.99780 * 11 9 7 24 24 H 1.09001 * 109.47003 * 55.00074 * 12 9 7 25 25 H 1.09000 * 109.47132 * 295.00344 * 12 9 7 26 26 H 1.08002 * 120.01147 * 0.02562 * 15 14 13 27 27 H 1.07997 * 119.97329 * 180.29890 * 16 15 14 28 28 H 1.07999 * 119.99121 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4290 -2.5747 -1.1671 12 6 2.2452 -3.6622 -0.0005 13 8 1.5345 -4.8963 0.1168 14 6 2.2756 -6.0362 0.1329 15 6 3.6574 -5.9672 0.0371 16 6 4.4097 -7.1258 0.0594 17 6 3.7848 -8.3563 0.1714 18 9 4.5221 -9.4882 0.1925 19 6 2.4052 -8.4280 0.2607 20 6 1.6494 -7.2705 0.2376 21 17 -0.0806 -7.3602 0.3489 22 1 -0.4850 0.8401 0.0004 23 1 0.9208 -2.5291 -1.9984 24 1 2.9293 -3.5553 0.8413 25 1 2.8114 -3.6561 -0.9319 26 1 4.1456 -5.0078 -0.0499 27 1 5.4861 -7.0716 -0.0104 28 1 1.9190 -9.3885 0.3476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041251891.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:01 Heat of formation + Delta-G solvation = -139.020018 kcal Electronic energy + Delta-G solvation = -16676.690477 eV Core-core repulsion = 13439.592535 eV Total energy + Delta-G solvation = -3237.097943 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.89976 -41.19028 -38.74457 -37.43424 -37.17070 -34.29942 -32.17470 -31.34007 -29.96535 -27.09117 -24.48073 -23.52019 -22.47808 -19.76434 -18.95090 -18.21360 -17.93722 -17.18248 -16.68793 -16.55341 -16.43319 -15.91403 -15.42987 -15.08038 -14.96750 -14.45865 -14.37516 -13.79785 -13.54537 -13.07660 -12.90239 -12.80469 -12.42388 -12.24665 -12.08915 -11.93037 -11.73522 -11.08936 -10.76367 -10.30001 -10.12468 -9.14413 -8.18179 -6.46217 -0.10727 0.03964 1.05554 1.43563 1.44274 1.55140 2.13107 2.34038 2.44621 3.09648 3.21153 3.59794 3.77773 3.98206 4.11231 4.18948 4.23022 4.38005 4.53168 4.74032 4.80300 4.97891 5.04091 5.51456 5.55158 5.64700 5.93733 6.31050 6.66539 7.29116 7.49258 8.87632 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.031624 B = 0.004839 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.185766 B = 5784.846365 C = 6559.176999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.232 3.768 10 H 0.024 0.976 11 O -0.577 6.577 12 C 0.047 3.953 13 O -0.314 6.314 14 C 0.117 3.883 15 C -0.174 4.174 16 C -0.093 4.093 17 C 0.060 3.940 18 F -0.136 7.136 19 C -0.103 4.103 20 C -0.067 4.067 21 Cl -0.056 7.056 22 H 0.263 0.737 23 H 0.358 0.642 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.161 0.839 27 H 0.173 0.827 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.311 -14.375 -0.284 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.623 4.623 8 H 0.093 0.907 9 C 0.174 3.826 10 H 0.042 0.958 11 O -0.381 6.381 12 C -0.027 4.027 13 O -0.228 6.228 14 C 0.070 3.930 15 C -0.192 4.192 16 C -0.112 4.112 17 C 0.040 3.960 18 F -0.115 7.115 19 C -0.122 4.122 20 C -0.094 4.094 21 Cl -0.027 7.027 22 H 0.072 0.928 23 H 0.203 0.797 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.179 0.821 27 H 0.191 0.809 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.325 -14.334 0.206 16.578 hybrid contribution 0.478 0.846 -0.266 1.007 sum 8.803 -13.488 -0.060 16.107 Atomic orbital electron populations 1.70242 1.07970 1.27726 1.47646 1.25966 0.95486 1.03285 0.93083 0.85420 0.78689 0.78099 0.78542 1.19666 1.21244 1.18301 1.21821 0.93974 0.91285 1.55215 0.90739 1.19292 0.88173 0.89576 0.85543 0.95817 1.86566 1.39158 1.96353 1.16042 1.23851 0.96311 0.80728 1.01853 1.86307 1.36425 1.13268 1.86765 1.19245 0.91196 0.86467 0.96093 1.21350 0.90950 1.01152 1.05783 1.21314 1.02555 0.89394 0.97932 1.17330 0.88462 0.82747 1.07473 1.91506 1.76498 1.49078 1.94410 1.20928 0.92150 0.98365 1.00752 1.20037 0.85989 0.92020 1.11362 1.98378 1.09166 1.98527 1.96665 0.92790 0.79660 0.90664 0.90611 0.82142 0.80936 0.81499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.86 12.84 21.45 0.28 -52.59 15 2 C 0.02 1.33 5.40 84.66 0.46 1.79 15 3 Si 0.97 41.26 29.54 68.60 2.03 43.28 15 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 5 H -0.29 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 7 C -0.59 -30.22 8.76 25.60 0.22 -30.00 15 8 H 0.07 3.54 7.74 -2.91 -0.02 3.51 15 9 C 0.23 11.59 3.10 29.85 0.09 11.68 15 10 H 0.02 1.38 8.14 -2.39 -0.02 1.36 15 11 O -0.58 -30.03 12.70 -144.36 -1.83 -31.87 15 12 C 0.05 1.79 4.31 71.98 0.31 2.10 15 13 O -0.31 -12.09 9.56 -88.58 -0.85 -12.94 15 14 C 0.12 3.65 6.68 22.51 0.15 3.80 15 15 C -0.17 -4.23 9.04 22.36 0.20 -4.03 15 16 C -0.09 -1.86 10.02 22.31 0.22 -1.63 15 17 C 0.06 1.28 7.30 22.37 0.16 1.45 15 18 F -0.14 -2.87 17.27 44.97 0.78 -2.09 15 19 C -0.10 -2.36 9.80 22.32 0.22 -2.14 15 20 C -0.07 -1.91 6.33 22.41 0.14 -1.77 15 21 Cl -0.06 -1.71 28.50 -2.72 -0.08 -1.79 15 22 H 0.26 14.62 8.31 -92.71 -0.77 13.85 15 23 H 0.36 16.00 9.04 -74.06 -0.67 15.33 15 24 H 0.08 2.61 7.66 -2.39 -0.02 2.59 15 25 H 0.08 2.54 7.66 -2.39 -0.02 2.52 15 26 H 0.16 3.48 6.30 -2.91 -0.02 3.46 15 27 H 0.17 2.32 8.06 -2.91 -0.02 2.30 15 28 H 0.17 3.06 8.06 -2.91 -0.02 3.04 15 Total: -1.00 -63.50 273.44 3.04 -60.46 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.54 Total: 16.27 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 2.18 Total: -18.74 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.28 Total: -52.59 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -2.68 Total: -44.80 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.78 Total: -2.09 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -63.50 3.04 -60.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251891.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.560 kcal (2) G-P(sol) polarization free energy of solvation -63.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds