Wall clock time and date at job start Mon Mar 30 2020 06:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 11 11 O 1.42899 * 109.47451 * 59.99396 * 9 7 2 12 12 C 1.52999 * 109.47110 * 180.02562 * 9 7 2 13 13 C 1.50706 * 109.47131 * 174.99882 * 12 9 7 14 14 C 1.38246 * 119.99233 * 99.99555 * 13 12 9 15 15 C 1.38202 * 120.02160 * 179.97438 * 14 13 12 16 16 C 1.38377 * 120.01623 * 0.02562 * 15 14 13 17 17 Cl 1.73592 * 120.00844 * 179.97438 * 16 15 14 18 18 C 1.38316 * 119.98683 * 359.97438 * 16 15 14 19 19 C 1.38334 * 119.99109 * 279.71728 * 13 12 9 20 20 Cl 1.73605 * 120.00624 * 0.02562 * 19 13 12 21 21 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 22 22 H 0.96695 * 113.99786 * 60.00449 * 11 9 7 23 23 H 1.09003 * 109.46964 * 294.99690 * 12 9 7 24 24 H 1.08997 * 109.47631 * 54.99450 * 12 9 7 25 25 H 1.07999 * 119.98950 * 0.02562 * 14 13 12 26 26 H 1.07996 * 119.98922 * 180.02562 * 15 14 13 27 27 H 1.07999 * 120.01416 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 8 0.4298 -2.5751 -1.1664 12 6 2.2453 -3.6620 0.0018 13 6 1.4957 -4.9636 0.1257 14 6 1.2546 -5.7319 -0.9981 15 6 0.5678 -6.9258 -0.8851 16 6 0.1206 -7.3527 0.3529 17 17 -0.7427 -8.8521 0.4945 18 6 0.3616 -6.5844 1.4776 19 6 1.0542 -5.3921 1.3647 20 17 1.3629 -4.4303 2.7766 21 1 -0.4850 -0.8401 -0.0004 22 1 0.9222 -2.5299 -1.9974 23 1 2.8122 -3.6564 -0.9292 24 1 2.9288 -3.5548 0.8440 25 1 1.6038 -5.3993 -1.9644 26 1 0.3801 -7.5257 -1.7632 27 1 0.0124 -6.9170 2.4439 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041252083.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:01 Heat of formation + Delta-G solvation = -77.962016 kcal Electronic energy + Delta-G solvation = -14916.750518 eV Core-core repulsion = 12110.636624 eV Total energy + Delta-G solvation = -2806.113894 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.68106 -38.24367 -37.66845 -37.23032 -34.25330 -33.59020 -31.94292 -29.71697 -26.58089 -24.02662 -23.75624 -22.10864 -19.39273 -18.34477 -17.20735 -17.04836 -16.23527 -15.69508 -15.54305 -15.26457 -15.01781 -14.66973 -14.39782 -13.98645 -13.33436 -13.12027 -12.70773 -12.61253 -12.39792 -12.21525 -11.99763 -11.96410 -11.93028 -11.83627 -11.23795 -10.59837 -10.19216 -9.96774 -9.48352 -8.56703 -6.41461 -0.03922 0.07371 0.81602 1.28235 1.54126 1.62293 1.79435 2.41720 2.58534 3.20678 3.65345 3.74449 3.92442 4.08440 4.15676 4.34886 4.49071 4.61476 4.68445 4.92195 5.05642 5.09297 5.29079 5.56882 5.60158 5.90531 6.19166 6.60910 7.23549 7.54793 8.80504 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.036272 B = 0.005469 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.753212 B = 5118.666632 C = 5485.397648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.114 2.886 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.654 4.654 8 H 0.051 0.949 9 C 0.222 3.778 10 H 0.027 0.973 11 O -0.590 6.590 12 C -0.094 4.094 13 C -0.063 4.063 14 C -0.090 4.090 15 C -0.097 4.097 16 C -0.040 4.040 17 Cl -0.054 7.054 18 C -0.106 4.106 19 C -0.045 4.045 20 Cl -0.067 7.067 21 H 0.267 0.733 22 H 0.363 0.637 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.157 0.843 26 H 0.166 0.834 27 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -15.372 -0.587 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.936 3.064 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.691 4.691 8 H 0.070 0.930 9 C 0.165 3.835 10 H 0.044 0.956 11 O -0.396 6.396 12 C -0.132 4.132 13 C -0.064 4.064 14 C -0.109 4.109 15 C -0.116 4.116 16 C -0.067 4.067 17 Cl -0.025 7.025 18 C -0.126 4.126 19 C -0.072 4.072 20 Cl -0.038 7.038 21 H 0.078 0.922 22 H 0.210 0.790 23 H 0.100 0.900 24 H 0.090 0.910 25 H 0.175 0.825 26 H 0.183 0.817 27 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.276 -13.864 0.023 14.050 hybrid contribution 0.393 -1.507 0.083 1.560 sum 2.670 -15.371 0.106 15.602 Atomic orbital electron populations 1.70749 1.08056 1.31225 1.45887 1.27203 0.96490 1.06345 0.91916 0.82991 0.74183 0.71493 0.77734 1.19704 1.21367 1.19618 1.22861 0.94662 0.93739 1.57885 0.93033 1.19336 0.88276 0.91286 0.84645 0.95567 1.86457 1.39895 1.96549 1.16670 1.21223 0.97942 0.90925 1.03106 1.20139 0.97685 0.96507 0.92047 1.21218 0.97987 0.93267 0.98395 1.21406 0.96783 0.96533 0.96869 1.20761 1.00844 0.90293 0.94772 1.98363 1.75144 1.30653 1.98326 1.20964 0.98982 0.92781 0.99823 1.20839 1.03434 0.94290 0.88592 1.98375 1.94462 1.71389 1.39587 0.92207 0.79048 0.89971 0.91030 0.82496 0.81688 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.86 13.53 21.45 0.29 -56.57 15 2 C -0.02 -0.99 5.40 84.65 0.46 -0.54 15 3 Si 1.11 49.46 29.90 68.60 2.05 51.51 15 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 15 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 7 C -0.65 -35.45 8.76 25.60 0.22 -35.22 15 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 15 9 C 0.22 10.83 2.36 29.85 0.07 10.90 15 10 H 0.03 1.45 7.19 -2.38 -0.02 1.44 15 11 O -0.59 -28.60 11.77 -148.98 -1.75 -30.36 15 12 C -0.09 -3.64 4.42 29.85 0.13 -3.51 15 13 C -0.06 -2.12 4.91 -19.84 -0.10 -2.21 15 14 C -0.09 -2.47 9.67 22.26 0.22 -2.25 15 15 C -0.10 -2.29 9.83 22.29 0.22 -2.07 15 16 C -0.04 -1.00 6.32 22.32 0.14 -0.86 15 17 Cl -0.05 -1.14 28.96 -2.72 -0.08 -1.22 15 18 C -0.11 -2.97 9.62 22.32 0.21 -2.76 15 19 C -0.04 -1.48 6.31 22.32 0.14 -1.34 15 20 Cl -0.07 -2.34 26.67 -2.72 -0.07 -2.42 15 21 H 0.27 17.02 6.47 -92.71 -0.60 16.42 15 22 H 0.36 15.27 9.04 -74.06 -0.67 14.61 15 23 H 0.08 2.87 8.00 -2.39 -0.02 2.85 15 24 H 0.07 2.83 7.34 -2.39 -0.02 2.82 15 25 H 0.16 3.59 8.04 -2.91 -0.02 3.56 15 26 H 0.17 2.84 8.06 -2.91 -0.02 2.81 15 27 H 0.15 3.71 8.06 -2.91 -0.02 3.68 15 Total: -1.00 -64.08 269.69 2.86 -61.23 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.70 Total: 17.68 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 1.72 Total: -39.86 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.29 Total: -56.57 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.75 Total: -30.36 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.51 kcal Atomic # 17 Polarization: -3.48 SS G_CDS: -0.15 Total: -3.63 kcal Total: -64.08 2.86 -61.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041252083.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.737 kcal (2) G-P(sol) polarization free energy of solvation -64.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds