Wall clock time and date at job start Mon Mar 30 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47436 * 299.99991 * 3 2 1 6 6 H 1.48498 * 109.47435 * 60.00011 * 3 2 1 7 7 C 1.37874 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00056 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00278 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47121 * 59.99706 * 9 7 2 11 11 O 1.42898 * 109.47089 * 299.99822 * 9 7 2 12 12 C 1.52998 * 109.47066 * 179.97438 * 9 7 2 13 13 C 1.50697 * 109.47264 * 184.99899 * 12 9 7 14 14 C 1.38244 * 119.99665 * 99.99475 * 13 12 9 15 15 C 1.38202 * 120.02916 * 180.02562 * 14 13 12 16 16 C 1.38376 * 120.01140 * 0.26411 * 15 14 13 17 17 Cl 1.73599 * 120.00694 * 179.72002 * 16 15 14 18 18 C 1.38308 * 119.98833 * 359.50681 * 16 15 14 19 19 C 1.38346 * 119.99348 * 280.02460 * 13 12 9 20 20 Cl 1.73596 * 120.00362 * 0.02562 * 19 13 12 21 21 H 0.97003 * 119.99573 * 0.02562 * 1 2 3 22 22 H 0.96710 * 113.99658 * 300.00060 * 11 9 7 23 23 H 1.08999 * 109.47152 * 64.99947 * 12 9 7 24 24 H 1.09003 * 109.47324 * 304.99560 * 12 9 7 25 25 H 1.07996 * 119.98338 * 0.02892 * 14 13 12 26 26 H 1.08002 * 119.99100 * 179.97438 * 15 14 13 27 27 H 1.08001 * 120.01832 * 180.25967 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 0.4290 -2.5746 1.1670 12 6 2.2452 -3.6621 0.0005 13 6 1.4959 -4.9637 -0.1233 14 6 1.4100 -5.5979 -1.3486 15 6 0.7226 -6.7913 -1.4630 16 6 0.1150 -7.3493 -0.3520 17 17 -0.7547 -8.8447 -0.4974 18 6 0.2045 -6.7177 0.8751 19 6 0.8934 -5.5234 0.9893 20 17 1.0001 -4.7260 2.5276 21 1 -0.4850 0.8401 -0.0004 22 1 0.9210 -2.5291 1.9984 23 1 2.8114 -3.6560 0.9319 24 1 2.9293 -3.5553 -0.8413 25 1 1.8805 -5.1606 -2.2168 26 1 0.6555 -7.2861 -2.4207 27 1 -0.2660 -7.1550 1.7434 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041252085.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:03 Heat of formation + Delta-G solvation = -62.375754 kcal Electronic energy + Delta-G solvation = -14955.603210 eV Core-core repulsion = 12150.165187 eV Total energy + Delta-G solvation = -2805.438023 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.57779 -38.03035 -37.35784 -37.15696 -34.21610 -33.41611 -31.83888 -29.80866 -26.95966 -23.89235 -23.63153 -21.84569 -19.11737 -18.15837 -17.07629 -16.63776 -16.50292 -16.22609 -15.40297 -15.08972 -14.90949 -14.46295 -14.38174 -13.32232 -13.20481 -13.09602 -12.82784 -12.80321 -12.48145 -12.23724 -12.05871 -11.99650 -11.89778 -11.62100 -10.92550 -10.66237 -10.20171 -9.87992 -9.31771 -8.09666 -6.35182 0.05445 0.14920 0.90961 1.40304 1.40894 1.42704 1.54011 2.39928 2.51617 3.16210 3.73835 3.87035 4.00169 4.20938 4.32717 4.50758 4.61343 4.72556 4.77815 5.02428 5.15581 5.19077 5.39443 5.64257 5.66678 5.83584 6.12337 6.76296 7.37354 7.60172 8.94091 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.037170 B = 0.005435 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.106134 B = 5151.027036 C = 5476.125689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.583 4.583 8 H 0.062 0.938 9 C 0.236 3.764 10 H 0.021 0.979 11 O -0.569 6.569 12 C -0.102 4.102 13 C -0.067 4.067 14 C -0.102 4.102 15 C -0.101 4.101 16 C -0.040 4.040 17 Cl -0.056 7.056 18 C -0.110 4.110 19 C -0.024 4.024 20 Cl -0.054 7.054 21 H 0.260 0.740 22 H 0.348 0.652 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.156 0.844 26 H 0.164 0.836 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 -14.766 -0.577 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.782 3.218 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.621 4.621 8 H 0.080 0.920 9 C 0.179 3.821 10 H 0.038 0.962 11 O -0.375 6.375 12 C -0.139 4.139 13 C -0.068 4.068 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.067 4.067 17 Cl -0.028 7.028 18 C -0.129 4.129 19 C -0.051 4.051 20 Cl -0.025 7.025 21 H 0.068 0.932 22 H 0.195 0.805 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.174 0.826 26 H 0.181 0.819 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.914 -14.780 -0.903 14.931 hybrid contribution 0.519 1.109 0.590 1.359 sum 2.432 -13.671 -0.313 13.889 Atomic orbital electron populations 1.70234 1.07591 1.27105 1.48694 1.25882 0.95448 1.02784 0.93612 0.85555 0.79296 0.79456 0.77522 1.18577 1.20608 1.20850 1.22124 0.93627 0.92607 1.53738 0.91999 1.19144 0.87658 0.90090 0.85250 0.96155 1.86586 1.39109 1.96231 1.15566 1.21372 0.98277 0.91184 1.03112 1.20184 0.97504 0.96325 0.92770 1.21267 0.99270 0.94661 0.96839 1.21357 0.96358 0.95507 0.98752 1.20754 1.00434 0.90698 0.94810 1.98359 1.74996 1.31251 1.98145 1.20966 0.99759 0.94035 0.98143 1.20716 1.01922 0.94497 0.87977 1.98322 1.96858 1.79479 1.27857 0.93151 0.80528 0.90985 0.89865 0.82643 0.81872 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.54 12.84 21.45 0.28 -53.26 15 2 C 0.02 1.38 5.40 84.65 0.46 1.84 15 3 Si 0.96 42.99 29.54 68.60 2.03 45.01 15 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 15 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 15 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 7 C -0.58 -31.34 8.76 25.60 0.22 -31.11 15 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 15 9 C 0.24 11.76 2.81 29.85 0.08 11.84 15 10 H 0.02 1.15 8.14 -2.39 -0.02 1.13 15 11 O -0.57 -29.13 10.40 -148.98 -1.55 -30.67 15 12 C -0.10 -3.94 4.64 29.85 0.14 -3.80 15 13 C -0.07 -2.28 5.10 -19.84 -0.10 -2.38 15 14 C -0.10 -2.87 9.67 22.26 0.22 -2.65 15 15 C -0.10 -2.45 9.83 22.29 0.22 -2.23 15 16 C -0.04 -1.02 6.32 22.32 0.14 -0.88 15 17 Cl -0.06 -1.22 28.96 -2.72 -0.08 -1.30 15 18 C -0.11 -3.11 9.62 22.31 0.21 -2.89 15 19 C -0.02 -0.80 6.03 22.32 0.13 -0.66 15 20 Cl -0.05 -1.82 23.66 -2.72 -0.06 -1.88 15 21 H 0.26 14.65 8.31 -92.71 -0.77 13.88 15 22 H 0.35 16.56 6.97 -74.05 -0.52 16.04 15 23 H 0.07 2.73 7.36 -2.39 -0.02 2.71 15 24 H 0.08 2.97 8.00 -2.39 -0.02 2.96 15 25 H 0.16 3.73 8.04 -2.91 -0.02 3.70 15 26 H 0.16 2.92 8.06 -2.91 -0.02 2.90 15 27 H 0.15 3.73 8.06 -2.91 -0.02 3.71 15 Total: -1.00 -61.90 265.57 3.02 -58.88 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.69 Total: 16.17 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 1.73 Total: -32.94 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.28 Total: -53.26 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.55 Total: -30.67 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.14 Total: -3.18 kcal Total: -61.90 3.02 -58.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041252085.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.497 kcal (2) G-P(sol) polarization free energy of solvation -61.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds