Wall clock time and date at job start Mon Mar 30 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99993 * 2 1 4 4 H 1.48503 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47366 * 299.99790 * 3 2 1 6 6 H 1.48504 * 109.47370 * 59.99883 * 3 2 1 7 7 C 1.37879 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99614 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47358 * 59.99668 * 9 7 2 11 11 O 1.42903 * 109.47131 * 299.99309 * 9 7 2 12 12 C 1.53003 * 109.47222 * 180.02562 * 9 7 2 13 13 C 1.50698 * 109.47463 * 184.99804 * 12 9 7 14 14 C 1.38264 * 119.98033 * 89.99463 * 13 12 9 15 15 C 1.38207 * 120.03886 * 179.97438 * 14 13 12 16 16 C 1.38348 * 119.99847 * 0.02562 * 15 14 13 17 17 Cl 1.73602 * 120.01878 * 179.97438 * 16 15 14 18 18 C 1.38445 * 119.96238 * 359.97438 * 16 15 14 19 19 Cl 1.73602 * 120.02008 * 180.02562 * 18 16 15 20 20 C 1.38204 * 119.98190 * 269.72655 * 13 12 9 21 21 H 0.97001 * 120.00070 * 0.02562 * 1 2 3 22 22 H 0.96700 * 114.00311 * 300.00591 * 11 9 7 23 23 H 1.09005 * 109.46682 * 304.99605 * 12 9 7 24 24 H 1.08999 * 109.47221 * 64.99771 * 12 9 7 25 25 H 1.08001 * 119.98011 * 0.02562 * 14 13 12 26 26 H 1.07995 * 119.99849 * 180.02562 * 15 14 13 27 27 H 1.08006 * 119.99878 * 359.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8896 11 8 0.4291 -2.5746 1.1671 12 6 2.2453 -3.6621 0.0018 13 6 1.4960 -4.9637 -0.1220 14 6 1.2326 -5.4931 -1.3718 15 6 0.5460 -6.6871 -1.4867 16 6 0.1214 -7.3529 -0.3507 17 17 -0.7417 -8.8523 -0.4945 18 6 0.3851 -6.8228 0.9007 19 17 -0.1465 -7.6573 2.3271 20 6 1.0774 -5.6303 1.0140 21 1 -0.4850 0.8400 -0.0004 22 1 0.9210 -2.5290 1.9984 23 1 2.9300 -3.5556 -0.8396 24 1 2.8108 -3.6556 0.9336 25 1 1.5643 -4.9738 -2.2587 26 1 0.3410 -7.1002 -2.4632 27 1 1.2876 -5.2186 1.9901 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041252091.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:25 Heat of formation + Delta-G solvation = -55.141476 kcal Electronic energy + Delta-G solvation = -14693.567137 eV Core-core repulsion = 11888.442816 eV Total energy + Delta-G solvation = -2805.124321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.36067 -36.69905 -36.38530 -35.69956 -32.22843 -31.91872 -30.70401 -28.22244 -25.23808 -22.75264 -22.04124 -20.37899 -17.30985 -16.78584 -15.79992 -15.34361 -14.67822 -14.45422 -13.93193 -13.82125 -13.50414 -13.22465 -12.89027 -11.80349 -11.77847 -11.64148 -11.39239 -11.06028 -10.95615 -10.91193 -10.81273 -10.66862 -10.59218 -10.08593 -9.25296 -8.72493 -8.64773 -8.54359 -7.99392 -6.06964 -4.26423 1.19602 1.34177 1.97601 2.35348 3.22704 3.31572 3.34031 3.70522 4.33663 4.79802 5.09452 5.20089 5.32667 5.44219 5.53711 5.80630 6.06213 6.11294 6.22218 6.32193 6.41788 6.66758 6.81098 6.91762 7.62746 7.77354 8.08597 8.76543 9.30992 9.51211 10.96851 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.040144 B = 0.004763 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.319954 B = 5876.778975 C = 6178.786139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.575 4.575 8 H 0.058 0.942 9 C 0.236 3.764 10 H 0.058 0.942 11 O -0.562 6.562 12 C -0.114 4.114 13 C -0.033 4.033 14 C -0.108 4.108 15 C -0.099 4.099 16 C -0.048 4.048 17 Cl -0.067 7.067 18 C -0.026 4.026 19 Cl -0.063 7.063 20 C -0.089 4.089 21 H 0.261 0.739 22 H 0.344 0.656 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -13.872 -0.245 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.613 4.613 8 H 0.076 0.924 9 C 0.179 3.821 10 H 0.075 0.925 11 O -0.364 6.364 12 C -0.152 4.152 13 C -0.033 4.033 14 C -0.126 4.126 15 C -0.118 4.118 16 C -0.076 4.076 17 Cl -0.038 7.038 18 C -0.054 4.054 19 Cl -0.034 7.034 20 C -0.108 4.108 21 H 0.071 0.929 22 H 0.187 0.813 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.154 0.846 26 H 0.154 0.846 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.153 -14.027 -0.593 14.087 hybrid contribution 0.722 0.822 0.443 1.180 sum 1.875 -13.205 -0.150 13.338 Atomic orbital electron populations 1.70085 1.05950 1.26455 1.46777 1.25052 0.94700 0.99202 0.93765 0.86612 0.80203 0.83797 0.77744 1.19671 1.20866 1.20862 1.21686 0.93237 0.91311 1.55049 0.92394 1.19373 0.87618 0.88756 0.86400 0.92466 1.86602 1.38324 1.96209 1.15275 1.21677 0.99111 0.91882 1.02522 1.20288 0.95489 0.95713 0.91854 1.21174 0.98521 0.94770 0.98128 1.20943 0.98508 0.95416 0.96937 1.20622 1.02638 0.90904 0.93401 1.98350 1.75514 1.31725 1.98257 1.20731 1.02397 0.95744 0.86493 1.98359 1.89079 1.77708 1.38263 1.20931 0.97488 0.92100 1.00234 0.92948 0.81251 0.90671 0.91425 0.84562 0.84565 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.71 12.84 55.43 0.71 -24.00 15 2 C 0.08 2.14 5.40 -17.82 -0.10 2.05 15 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.58 -14.96 8.76 -34.44 -0.30 -15.26 15 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 15 9 C 0.24 5.58 2.81 -27.88 -0.08 5.50 15 10 H 0.06 1.51 8.14 -51.93 -0.42 1.09 15 11 O -0.56 -13.65 12.23 -35.23 -0.43 -14.08 15 12 C -0.11 -2.09 4.97 -27.88 -0.14 -2.23 15 13 C -0.03 -0.55 4.96 -104.63 -0.52 -1.07 15 14 C -0.11 -1.60 9.70 -39.58 -0.38 -1.99 15 15 C -0.10 -1.36 9.83 -39.55 -0.39 -1.75 15 16 C -0.05 -0.71 6.32 -39.46 -0.25 -0.96 15 17 Cl -0.07 -0.88 27.96 -51.86 -1.45 -2.33 15 18 C -0.03 -0.40 6.32 -39.47 -0.25 -0.65 15 19 Cl -0.06 -0.89 27.96 -51.86 -1.45 -2.34 15 20 C -0.09 -1.42 9.19 -39.55 -0.36 -1.78 15 21 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 22 H 0.34 7.33 9.04 45.56 0.41 7.75 15 23 H 0.07 1.31 8.09 -51.93 -0.42 0.89 15 24 H 0.07 1.17 8.08 -51.93 -0.42 0.75 15 25 H 0.14 1.81 8.06 -52.49 -0.42 1.38 15 26 H 0.14 1.52 8.06 -52.49 -0.42 1.10 15 27 H 0.14 2.10 8.06 -52.48 -0.42 1.68 15 LS Contribution 273.70 15.07 4.12 4.12 Total: -1.00 -28.83 273.70 -7.95 -36.77 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -1.66 Total: 4.52 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -2.77 Total: -18.14 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.71 Total: -24.00 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.43 Total: -14.08 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -2.90 Total: -4.67 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.83 -7.95 -36.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041252091.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.370 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds