Wall clock time and date at job start Mon Mar 30 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99993 * 2 1 4 4 H 1.48503 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47366 * 299.99790 * 3 2 1 6 6 H 1.48504 * 109.47370 * 59.99883 * 3 2 1 7 7 C 1.37879 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99614 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47358 * 59.99668 * 9 7 2 11 11 O 1.42903 * 109.47131 * 299.99309 * 9 7 2 12 12 C 1.53003 * 109.47222 * 180.02562 * 9 7 2 13 13 C 1.50698 * 109.47463 * 184.99804 * 12 9 7 14 14 C 1.38264 * 119.98033 * 89.99463 * 13 12 9 15 15 C 1.38207 * 120.03886 * 179.97438 * 14 13 12 16 16 C 1.38348 * 119.99847 * 0.02562 * 15 14 13 17 17 Cl 1.73602 * 120.01878 * 179.97438 * 16 15 14 18 18 C 1.38445 * 119.96238 * 359.97438 * 16 15 14 19 19 Cl 1.73602 * 120.02008 * 180.02562 * 18 16 15 20 20 C 1.38204 * 119.98190 * 269.72655 * 13 12 9 21 21 H 0.97001 * 120.00070 * 0.02562 * 1 2 3 22 22 H 0.96700 * 114.00311 * 300.00591 * 11 9 7 23 23 H 1.09005 * 109.46682 * 304.99605 * 12 9 7 24 24 H 1.08999 * 109.47221 * 64.99771 * 12 9 7 25 25 H 1.08001 * 119.98011 * 0.02562 * 14 13 12 26 26 H 1.07995 * 119.99849 * 180.02562 * 15 14 13 27 27 H 1.08006 * 119.99878 * 359.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8896 11 8 0.4291 -2.5746 1.1671 12 6 2.2453 -3.6621 0.0018 13 6 1.4960 -4.9637 -0.1220 14 6 1.2326 -5.4931 -1.3718 15 6 0.5460 -6.6871 -1.4867 16 6 0.1214 -7.3529 -0.3507 17 17 -0.7417 -8.8523 -0.4945 18 6 0.3851 -6.8228 0.9007 19 17 -0.1465 -7.6573 2.3271 20 6 1.0774 -5.6303 1.0140 21 1 -0.4850 0.8400 -0.0004 22 1 0.9210 -2.5290 1.9984 23 1 2.9300 -3.5556 -0.8396 24 1 2.8108 -3.6556 0.9336 25 1 1.5643 -4.9738 -2.2587 26 1 0.3410 -7.1002 -2.4632 27 1 1.2876 -5.2186 1.9901 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041252091.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:25 Heat of formation + Delta-G solvation = -72.227050 kcal Electronic energy + Delta-G solvation = -14694.308023 eV Core-core repulsion = 11888.442816 eV Total energy + Delta-G solvation = -2805.865207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.56574 -38.08651 -37.50537 -37.22904 -34.23753 -33.36023 -31.86626 -29.85231 -26.98495 -23.91120 -23.62022 -21.88564 -19.09221 -18.11860 -17.03386 -16.65056 -16.61832 -16.16140 -15.41877 -15.15991 -14.76280 -14.65926 -14.46487 -13.27019 -13.16040 -13.00391 -12.87496 -12.82981 -12.45749 -12.26594 -12.20539 -11.99055 -11.90776 -11.77137 -11.06708 -10.68886 -10.26214 -9.88152 -9.41962 -8.10945 -6.36573 0.00217 0.18020 0.84253 1.21036 1.41368 1.44015 1.54870 2.39899 2.52578 3.15499 3.67986 3.85010 4.14064 4.24965 4.31618 4.41249 4.61343 4.77174 4.82147 4.99235 5.11726 5.21428 5.49014 5.67132 5.68233 5.83694 6.10863 6.76180 7.37033 7.59644 8.92940 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.040144 B = 0.004763 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.319954 B = 5876.778975 C = 6178.786139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.956 3.044 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.583 4.583 8 H 0.064 0.936 9 C 0.236 3.764 10 H 0.022 0.978 11 O -0.578 6.578 12 C -0.098 4.098 13 C -0.052 4.052 14 C -0.110 4.110 15 C -0.094 4.094 16 C -0.053 4.053 17 Cl -0.053 7.053 18 C -0.038 4.038 19 Cl -0.055 7.055 20 C -0.096 4.096 21 H 0.260 0.740 22 H 0.355 0.645 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.151 0.849 26 H 0.165 0.835 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -14.518 -0.572 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.621 4.621 8 H 0.083 0.917 9 C 0.178 3.822 10 H 0.040 0.960 11 O -0.382 6.382 12 C -0.135 4.135 13 C -0.053 4.053 14 C -0.129 4.129 15 C -0.113 4.113 16 C -0.080 4.080 17 Cl -0.024 7.024 18 C -0.065 4.065 19 Cl -0.026 7.026 20 C -0.115 4.115 21 H 0.069 0.931 22 H 0.200 0.800 23 H 0.102 0.898 24 H 0.095 0.905 25 H 0.168 0.832 26 H 0.183 0.817 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.035 -14.687 -0.917 14.855 hybrid contribution 0.417 0.918 0.548 1.147 sum 2.452 -13.769 -0.368 13.990 Atomic orbital electron populations 1.70223 1.07662 1.27180 1.48703 1.25888 0.95401 1.02861 0.93581 0.85557 0.79342 0.79468 0.77471 1.18476 1.20773 1.20876 1.22134 0.93731 0.92508 1.53690 0.91750 1.19208 0.87692 0.90304 0.84981 0.96011 1.86538 1.39253 1.96369 1.16052 1.21342 0.97934 0.90804 1.03429 1.20186 0.96695 0.95473 0.92927 1.21403 0.98235 0.95199 0.98021 1.21238 0.97330 0.94701 0.97983 1.20834 1.02313 0.91434 0.93447 1.98356 1.75127 1.30750 1.98208 1.20829 1.02633 0.95831 0.87231 1.98357 1.88965 1.77433 1.37880 1.20990 0.97699 0.92484 1.00282 0.93135 0.79976 0.89821 0.90478 0.83154 0.81741 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.66 12.84 21.45 0.28 -52.38 15 2 C 0.02 1.35 5.40 84.66 0.46 1.81 15 3 Si 0.96 41.98 29.54 68.60 2.03 44.01 15 4 H -0.26 -10.85 7.11 99.48 0.71 -10.15 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 7 C -0.58 -30.18 8.76 25.60 0.22 -29.96 15 8 H 0.06 3.18 7.74 -2.92 -0.02 3.16 15 9 C 0.24 11.20 2.81 29.85 0.08 11.28 15 10 H 0.02 1.19 8.14 -2.39 -0.02 1.17 15 11 O -0.58 -28.37 12.23 -148.98 -1.82 -30.20 15 12 C -0.10 -3.49 4.97 29.85 0.15 -3.35 15 13 C -0.05 -1.69 4.96 -19.87 -0.10 -1.79 15 14 C -0.11 -3.12 9.70 22.27 0.22 -2.90 15 15 C -0.09 -2.38 9.83 22.29 0.22 -2.16 15 16 C -0.05 -1.45 6.32 22.35 0.14 -1.31 15 17 Cl -0.05 -1.29 27.96 -2.72 -0.08 -1.37 15 18 C -0.04 -1.11 6.32 22.34 0.14 -0.97 15 19 Cl -0.06 -1.49 27.96 -2.72 -0.08 -1.57 15 20 C -0.10 -2.98 9.19 22.29 0.20 -2.78 15 21 H 0.26 14.44 8.31 -92.71 -0.77 13.67 15 22 H 0.36 15.22 9.04 -74.06 -0.67 14.55 15 23 H 0.08 2.81 8.09 -2.38 -0.02 2.79 15 24 H 0.08 2.58 8.08 -2.39 -0.02 2.56 15 25 H 0.15 3.73 8.06 -2.91 -0.02 3.71 15 26 H 0.17 3.15 8.06 -2.91 -0.02 3.13 15 27 H 0.14 4.21 8.06 -2.91 -0.02 4.18 15 Total: -1.00 -60.63 273.70 2.59 -58.03 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.53 Total: 15.61 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 1.74 Total: -32.13 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.28 Total: -52.38 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -1.82 Total: -30.20 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.15 Total: -2.94 kcal Total: -60.63 2.59 -58.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041252091.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.196 kcal (2) G-P(sol) polarization free energy of solvation -60.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds