Wall clock time and date at job start Mon Mar 30 2020 07:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 O 1.42898 * 109.47319 * 120.00307 * 2 1 3 13 13 C 1.35952 * 116.99739 * 270.00172 * 12 2 1 14 14 C 1.38790 * 120.06190 * 269.72513 * 13 12 2 15 15 Cl 1.73599 * 120.03161 * 359.97438 * 14 13 12 16 16 C 1.38268 * 119.93441 * 179.70215 * 14 13 12 17 17 C 1.38252 * 120.06485 * 0.59613 * 16 14 13 18 18 C 1.38255 * 120.12576 * 359.67631 * 17 16 14 19 19 C 1.38263 * 120.06671 * 0.02765 * 18 17 16 20 20 Cl 1.73594 * 120.03624 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 25 25 H 1.08006 * 119.96563 * 180.27385 * 16 14 13 26 26 H 1.08000 * 119.93943 * 179.70504 * 17 16 14 27 27 H 1.08004 * 119.96667 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 8 2.0063 -0.6737 1.1667 13 6 2.2121 0.0844 2.2763 14 6 3.4514 0.6677 2.4999 15 17 4.7415 0.4295 1.3630 16 6 3.6559 1.4432 3.6262 17 6 2.6310 1.6278 4.5354 18 6 1.3970 1.0434 4.3182 19 6 1.1848 0.2719 3.1906 20 17 -0.3651 -0.4610 2.9183 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 0.7092 1.1618 -3.4843 25 1 4.6189 1.9010 3.7984 26 1 2.7944 2.2301 5.4169 27 1 0.5980 1.1897 5.0300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041252095.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:35 Heat of formation + Delta-G solvation = -43.927218 kcal Electronic energy + Delta-G solvation = -15269.619540 eV Core-core repulsion = 12464.981506 eV Total energy + Delta-G solvation = -2804.638034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.91608 -38.45854 -37.64468 -37.14184 -35.27974 -31.88264 -31.61439 -30.21492 -27.35724 -24.09895 -23.79918 -22.46245 -18.98832 -18.62327 -17.63927 -17.23142 -16.81486 -15.80889 -15.60590 -15.32471 -14.57289 -14.34898 -13.92979 -13.69190 -13.30561 -13.15210 -12.98474 -12.75175 -12.64551 -12.48923 -12.15652 -11.99398 -11.91108 -11.54314 -11.04446 -10.71736 -10.40600 -9.71540 -9.55922 -8.22010 -6.34601 -0.01976 0.00925 0.97025 1.36352 1.39282 1.40257 1.53594 2.29056 2.42534 3.04083 3.14017 3.85203 4.06546 4.21438 4.30417 4.43692 4.64110 4.95067 4.98541 5.06451 5.11331 5.20061 5.32994 5.58029 5.63652 5.83036 6.14427 6.61548 6.94113 7.35753 8.84819 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.008320 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.885381 B = 3364.410409 C = 4301.526693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.240 3.760 3 H -0.010 1.010 4 C -0.529 4.529 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.916 5.916 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.274 1.274 11 H -0.275 1.275 12 O -0.345 6.345 13 C 0.095 3.905 14 C -0.075 4.075 15 Cl -0.062 7.062 16 C -0.092 4.092 17 C -0.095 4.095 18 C -0.091 4.091 19 C -0.073 4.073 20 Cl -0.056 7.056 21 H 0.029 0.971 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.267 0.733 25 H 0.168 0.832 26 H 0.191 0.809 27 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 3.300 14.711 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.187 3.813 3 H 0.008 0.992 4 C -0.567 4.567 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.200 1.200 12 O -0.263 6.263 13 C 0.048 3.952 14 C -0.102 4.102 15 Cl -0.033 7.033 16 C -0.111 4.111 17 C -0.113 4.113 18 C -0.109 4.109 19 C -0.100 4.100 20 Cl -0.027 7.027 21 H 0.049 0.951 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.186 0.814 26 H 0.208 0.792 27 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.477 3.128 14.400 14.943 hybrid contribution 0.064 -0.447 -1.371 1.443 sum 2.540 2.681 13.029 13.543 Atomic orbital electron populations 1.22306 0.97758 0.99731 1.01133 1.19775 0.91070 0.90555 0.79932 0.99187 1.21258 1.31935 1.13111 0.90391 0.92829 1.25618 0.95008 0.95746 1.01547 1.70002 1.37103 1.23739 1.24646 0.85368 0.78343 0.78581 0.78563 1.19417 1.19902 1.20028 1.86053 1.85996 1.35338 1.18915 1.18814 0.91657 0.94551 0.90139 1.21643 0.89997 1.02927 0.95648 1.98372 1.47844 1.96034 1.61057 1.21501 1.02355 0.96144 0.91094 1.21546 0.90375 0.99213 1.00190 1.21504 0.99954 0.94706 0.94779 1.21568 0.87167 1.02317 0.98980 1.98350 1.26369 1.81902 1.96083 0.95140 0.93683 0.91371 0.92337 0.81434 0.79206 0.81162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.77 8.17 71.98 0.59 -7.18 15 2 C 0.24 12.98 2.78 29.85 0.08 13.06 15 3 H -0.01 -0.56 7.91 -2.39 -0.02 -0.58 15 4 C -0.53 -30.70 8.89 25.60 0.23 -30.47 15 5 H 0.05 3.18 7.81 -2.91 -0.02 3.15 15 6 C 0.02 1.12 5.30 84.65 0.45 1.57 15 7 N -0.92 -52.86 11.32 21.45 0.24 -52.62 15 8 Si 0.97 44.50 29.54 68.60 2.03 46.53 15 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15 12 O -0.34 -17.09 8.67 -93.00 -0.81 -17.89 15 13 C 0.09 3.84 5.54 22.53 0.12 3.96 15 14 C -0.07 -2.63 6.33 22.41 0.14 -2.49 15 15 Cl -0.06 -2.34 28.50 -2.72 -0.08 -2.42 15 16 C -0.09 -2.24 9.83 22.28 0.22 -2.02 15 17 C -0.10 -1.79 10.04 22.28 0.22 -1.57 15 18 C -0.09 -2.12 9.82 22.28 0.22 -1.90 15 19 C -0.07 -2.46 6.24 22.41 0.14 -2.32 15 20 Cl -0.06 -1.93 24.90 -2.72 -0.07 -2.00 15 21 H 0.03 1.54 8.14 -2.39 -0.02 1.52 15 22 H 0.04 2.06 5.45 -2.39 -0.01 2.05 15 23 H 0.07 3.78 6.07 -2.39 -0.01 3.77 15 24 H 0.27 14.47 8.31 -92.71 -0.77 13.70 15 25 H 0.17 2.97 8.06 -2.91 -0.02 2.95 15 26 H 0.19 1.66 8.06 -2.91 -0.02 1.64 15 27 H 0.17 2.78 8.06 -2.91 -0.02 2.76 15 Total: -1.00 -66.27 265.06 4.92 -61.34 By element: Atomic # 1 Polarization: -4.76 SS G_CDS: 1.19 Total: -3.57 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 2.42 Total: -29.36 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.24 Total: -52.62 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.81 Total: -17.89 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 17 Polarization: -4.28 SS G_CDS: -0.15 Total: -4.42 kcal Total: -66.27 4.92 -61.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041252095.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.415 kcal (2) G-P(sol) polarization free energy of solvation -66.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds