Wall clock time and date at job start Mon Mar 30 2020 07:01:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3
5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1
6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1
7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2
9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4
10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4
11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4
12 12 O 1.42898 * 109.47319 * 120.00307 * 2 1 3
13 13 C 1.35952 * 116.99739 * 270.00172 * 12 2 1
14 14 C 1.38790 * 120.06190 * 269.72513 * 13 12 2
15 15 Cl 1.73599 * 120.03161 * 359.97438 * 14 13 12
16 16 C 1.38268 * 119.93441 * 179.70215 * 14 13 12
17 17 C 1.38252 * 120.06485 * 0.59613 * 16 14 13
18 18 C 1.38255 * 120.12576 * 359.67631 * 17 16 14
19 19 C 1.38263 * 120.06671 * 0.02765 * 18 17 16
20 20 Cl 1.73594 * 120.03624 * 180.02562 * 19 18 17
21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3
23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3
24 24 H 0.96999 * 120.00073 * 179.97438 * 7 6 4
25 25 H 1.08006 * 119.96563 * 180.27385 * 16 14 13
26 26 H 1.08000 * 119.93943 * 179.70504 * 17 16 14
27 27 H 1.08004 * 119.96667 * 180.02562 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6991 -0.2393 -2.4827
7 7 0.9433 0.8302 -2.6034
8 14 2.3212 -1.1203 -4.0080
9 1 3.1454 -2.2876 -3.6039
10 1 1.1659 -1.5865 -4.8160
11 1 3.1464 -0.1873 -4.8165
12 8 2.0063 -0.6737 1.1667
13 6 2.2121 0.0844 2.2763
14 6 3.4514 0.6677 2.4999
15 17 4.7415 0.4295 1.3630
16 6 3.6559 1.4432 3.6262
17 6 2.6310 1.6278 4.5354
18 6 1.3970 1.0434 4.3182
19 6 1.1848 0.2719 3.1906
20 17 -0.3651 -0.4610 2.9183
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3634 0.5137 0.8900
23 1 -0.3635 0.5138 -0.8899
24 1 0.7092 1.1618 -3.4843
25 1 4.6189 1.9010 3.7984
26 1 2.7944 2.2301 5.4169
27 1 0.5980 1.1897 5.0300
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000041252095.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:01:35
Heat of formation + Delta-G solvation = -43.927218 kcal
Electronic energy + Delta-G solvation = -15269.619540 eV
Core-core repulsion = 12464.981506 eV
Total energy + Delta-G solvation = -2804.638034 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 260.011 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-40.91608 -38.45854 -37.64468 -37.14184 -35.27974 -31.88264 -31.61439 -30.21492
-27.35724 -24.09895 -23.79918 -22.46245 -18.98832 -18.62327 -17.63927 -17.23142
-16.81486 -15.80889 -15.60590 -15.32471 -14.57289 -14.34898 -13.92979 -13.69190
-13.30561 -13.15210 -12.98474 -12.75175 -12.64551 -12.48923 -12.15652 -11.99398
-11.91108 -11.54314 -11.04446 -10.71736 -10.40600 -9.71540 -9.55922 -8.22010
-6.34601 -0.01976 0.00925 0.97025 1.36352 1.39282 1.40257 1.53594
2.29056 2.42534 3.04083 3.14017 3.85203 4.06546 4.21438 4.30417
4.43692 4.64110 4.95067 4.98541 5.06451 5.11331 5.20061 5.32994
5.58029 5.63652 5.83036 6.14427 6.61548 6.94113 7.35753 8.84819
Molecular weight = 260.01amu
Principal moments of inertia in cm(-1)
A = 0.022650 B = 0.008320 C = 0.006508
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1235.885381 B = 3364.410409 C = 4301.526693
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.240 3.760
3 H -0.010 1.010
4 C -0.529 4.529
5 H 0.053 0.947
6 C 0.020 3.980
7 N -0.916 5.916
8 Si 0.967 3.033
9 H -0.270 1.270
10 H -0.274 1.274
11 H -0.275 1.275
12 O -0.345 6.345
13 C 0.095 3.905
14 C -0.075 4.075
15 Cl -0.062 7.062
16 C -0.092 4.092
17 C -0.095 4.095
18 C -0.091 4.091
19 C -0.073 4.073
20 Cl -0.056 7.056
21 H 0.029 0.971
22 H 0.044 0.956
23 H 0.068 0.932
24 H 0.267 0.733
25 H 0.168 0.832
26 H 0.191 0.809
27 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.563 3.300 14.711 15.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.187 3.813
3 H 0.008 0.992
4 C -0.567 4.567
5 H 0.072 0.928
6 C -0.179 4.179
7 N -0.555 5.555
8 Si 0.791 3.209
9 H -0.194 1.194
10 H -0.199 1.199
11 H -0.200 1.200
12 O -0.263 6.263
13 C 0.048 3.952
14 C -0.102 4.102
15 Cl -0.033 7.033
16 C -0.111 4.111
17 C -0.113 4.113
18 C -0.109 4.109
19 C -0.100 4.100
20 Cl -0.027 7.027
21 H 0.049 0.951
22 H 0.063 0.937
23 H 0.086 0.914
24 H 0.077 0.923
25 H 0.186 0.814
26 H 0.208 0.792
27 H 0.188 0.812
Dipole moment (debyes) X Y Z Total
from point charges 2.477 3.128 14.400 14.943
hybrid contribution 0.064 -0.447 -1.371 1.443
sum 2.540 2.681 13.029 13.543
Atomic orbital electron populations
1.22306 0.97758 0.99731 1.01133 1.19775 0.91070 0.90555 0.79932
0.99187 1.21258 1.31935 1.13111 0.90391 0.92829 1.25618 0.95008
0.95746 1.01547 1.70002 1.37103 1.23739 1.24646 0.85368 0.78343
0.78581 0.78563 1.19417 1.19902 1.20028 1.86053 1.85996 1.35338
1.18915 1.18814 0.91657 0.94551 0.90139 1.21643 0.89997 1.02927
0.95648 1.98372 1.47844 1.96034 1.61057 1.21501 1.02355 0.96144
0.91094 1.21546 0.90375 0.99213 1.00190 1.21504 0.99954 0.94706
0.94779 1.21568 0.87167 1.02317 0.98980 1.98350 1.26369 1.81902
1.96083 0.95140 0.93683 0.91371 0.92337 0.81434 0.79206 0.81162
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -7.77 8.17 71.98 0.59 -7.18 15
2 C 0.24 12.98 2.78 29.85 0.08 13.06 15
3 H -0.01 -0.56 7.91 -2.39 -0.02 -0.58 15
4 C -0.53 -30.70 8.89 25.60 0.23 -30.47 15
5 H 0.05 3.18 7.81 -2.91 -0.02 3.15 15
6 C 0.02 1.12 5.30 84.65 0.45 1.57 15
7 N -0.92 -52.86 11.32 21.45 0.24 -52.62 15
8 Si 0.97 44.50 29.54 68.60 2.03 46.53 15
9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15
10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15
11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15
12 O -0.34 -17.09 8.67 -93.00 -0.81 -17.89 15
13 C 0.09 3.84 5.54 22.53 0.12 3.96 15
14 C -0.07 -2.63 6.33 22.41 0.14 -2.49 15
15 Cl -0.06 -2.34 28.50 -2.72 -0.08 -2.42 15
16 C -0.09 -2.24 9.83 22.28 0.22 -2.02 15
17 C -0.10 -1.79 10.04 22.28 0.22 -1.57 15
18 C -0.09 -2.12 9.82 22.28 0.22 -1.90 15
19 C -0.07 -2.46 6.24 22.41 0.14 -2.32 15
20 Cl -0.06 -1.93 24.90 -2.72 -0.07 -2.00 15
21 H 0.03 1.54 8.14 -2.39 -0.02 1.52 15
22 H 0.04 2.06 5.45 -2.39 -0.01 2.05 15
23 H 0.07 3.78 6.07 -2.39 -0.01 3.77 15
24 H 0.27 14.47 8.31 -92.71 -0.77 13.70 15
25 H 0.17 2.97 8.06 -2.91 -0.02 2.95 15
26 H 0.19 1.66 8.06 -2.91 -0.02 1.64 15
27 H 0.17 2.78 8.06 -2.91 -0.02 2.76 15
Total: -1.00 -66.27 265.06 4.92 -61.34
By element:
Atomic # 1 Polarization: -4.76 SS G_CDS: 1.19 Total: -3.57 kcal
Atomic # 6 Polarization: -31.78 SS G_CDS: 2.42 Total: -29.36 kcal
Atomic # 7 Polarization: -52.86 SS G_CDS: 0.24 Total: -52.62 kcal
Atomic # 8 Polarization: -17.09 SS G_CDS: -0.81 Total: -17.89 kcal
Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal
Atomic # 17 Polarization: -4.28 SS G_CDS: -0.15 Total: -4.42 kcal
Total: -66.27 4.92 -61.34 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000041252095.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.415 kcal
(2) G-P(sol) polarization free energy of solvation -66.266 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.851 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.342 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.927 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds