Wall clock time and date at job start Mon Mar 30 2020 07:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47547 * 2 1 4 4 C 1.50706 * 109.47339 * 120.00314 * 2 1 3 5 5 H 1.07997 * 120.00457 * 119.99846 * 4 2 1 6 6 C 1.37879 * 119.99589 * 299.99684 * 4 2 1 7 7 N 1.31518 * 119.99778 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00154 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47302 * 89.99640 * 8 6 4 10 10 H 1.48499 * 109.46959 * 209.99976 * 8 6 4 11 11 H 1.48504 * 109.46999 * 329.99536 * 8 6 4 12 12 O 1.42900 * 109.47147 * 240.00095 * 2 1 3 13 13 C 1.35945 * 116.99970 * 84.87672 * 12 2 1 14 14 C 1.38695 * 120.04853 * 354.57481 * 13 12 2 15 15 C 1.38144 * 119.97209 * 180.25504 * 14 13 12 16 16 C 1.38382 * 120.06550 * 359.44951 * 15 14 13 17 17 Cl 1.73595 * 119.95519 * 180.25465 * 16 15 14 18 18 C 1.38348 * 120.08739 * 0.55268 * 16 15 14 19 19 C 1.38256 * 120.03362 * 359.72790 * 18 16 15 20 20 Cl 1.73593 * 120.03410 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.47044 * 299.99792 * 1 2 3 22 22 H 1.08997 * 109.47149 * 60.00166 * 1 2 3 23 23 H 1.09003 * 109.47127 * 179.97438 * 1 2 3 24 24 H 0.96994 * 120.00173 * 180.02562 * 7 6 4 25 25 H 1.08002 * 120.01047 * 359.97438 * 14 13 12 26 26 H 1.08001 * 119.96940 * 179.72473 * 15 14 13 27 27 H 1.08000 * 119.98514 * 179.74177 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5566 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.9761 1.9950 3.9068 11 1 0.8472 2.1764 1.4921 12 8 2.0063 -0.6736 -1.1668 13 6 2.1101 0.0622 -2.3051 14 6 1.6558 1.3725 -2.3289 15 6 1.7572 2.1171 -3.4881 16 6 2.3219 1.5608 -4.6223 17 17 2.4539 2.5013 -6.0754 18 6 2.7759 0.2541 -4.6015 19 6 2.6710 -0.4966 -3.4452 20 17 3.2400 -2.1364 -3.4193 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9028 -0.5286 4.4375 25 1 1.2189 1.8089 -1.4429 26 1 1.3994 3.1360 -3.5078 27 1 3.2125 -0.1798 -5.4889 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041252101.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:42 Heat of formation + Delta-G solvation = -25.077396 kcal Electronic energy + Delta-G solvation = -14937.067474 eV Core-core repulsion = 12133.246830 eV Total energy + Delta-G solvation = -2803.820645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.97316 -37.59413 -36.45526 -35.90530 -33.38158 -31.18238 -30.59723 -29.18205 -25.38001 -23.41726 -22.46681 -20.73324 -18.12272 -16.88160 -16.47056 -15.97780 -15.04257 -14.77806 -14.60577 -14.01732 -13.42189 -13.17035 -12.74533 -12.42572 -12.26732 -12.16813 -11.96663 -11.38149 -11.04206 -10.99682 -10.88678 -10.61582 -10.37554 -10.16497 -9.84008 -9.30273 -8.88337 -8.81397 -7.81259 -6.31213 -4.34380 1.11799 1.27062 1.99525 2.50134 3.08046 3.13365 3.21126 3.57010 3.79833 4.14615 4.80347 4.93460 4.97462 5.13162 5.41840 5.67827 5.77114 5.91660 6.07250 6.11145 6.19597 6.23370 6.37695 6.56394 6.95781 7.32079 7.78971 8.36474 8.78434 9.24258 10.81136 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.006274 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.904012 B = 4461.728757 C = 5335.111774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.182 3.818 3 H 0.035 0.965 4 C -0.523 4.523 5 H 0.089 0.911 6 C 0.080 3.920 7 N -0.885 5.885 8 Si 0.883 3.117 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.267 1.267 12 O -0.279 6.279 13 C 0.171 3.829 14 C -0.196 4.196 15 C -0.063 4.063 16 C -0.081 4.081 17 Cl -0.076 7.076 18 C -0.064 4.064 19 C -0.074 4.074 20 Cl -0.050 7.050 21 H 0.057 0.943 22 H 0.038 0.962 23 H 0.068 0.932 24 H 0.270 0.730 25 H 0.149 0.851 26 H 0.136 0.864 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.238 5.612 -15.180 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.127 3.873 3 H 0.052 0.948 4 C -0.561 4.561 5 H 0.107 0.893 6 C -0.124 4.124 7 N -0.521 5.521 8 Si 0.712 3.288 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.192 1.192 12 O -0.190 6.190 13 C 0.120 3.880 14 C -0.216 4.216 15 C -0.082 4.082 16 C -0.108 4.108 17 Cl -0.047 7.047 18 C -0.083 4.083 19 C -0.102 4.102 20 Cl -0.021 7.021 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.167 0.833 26 H 0.154 0.846 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.127 5.315 -15.014 15.967 hybrid contribution -0.670 0.936 0.214 1.171 sum -1.797 6.251 -14.800 16.166 Atomic orbital electron populations 1.22728 0.98781 1.02648 0.99773 1.20745 0.90548 0.93989 0.81983 0.94757 1.20707 1.33402 1.15023 0.86919 0.89292 1.24754 0.95635 0.96740 0.95246 1.69830 1.44446 1.39803 0.98058 0.86938 0.80883 0.83334 0.77657 1.19936 1.21608 1.19217 1.86330 1.78599 1.38001 1.16059 1.19037 0.91144 0.90120 0.87658 1.21403 1.06432 0.93844 0.99879 1.20887 0.96556 1.00106 0.90618 1.20421 1.08498 0.92918 0.89005 1.98341 1.97180 1.72533 1.36644 1.20617 0.98847 0.91882 0.96976 1.19986 1.07675 0.88803 0.93735 1.98365 1.87538 1.17509 1.98665 0.92501 0.94254 0.91300 0.91945 0.83312 0.84592 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 8.65 37.16 0.32 -3.41 15 2 C 0.18 4.16 1.81 -27.88 -0.05 4.11 15 3 H 0.03 0.77 5.37 -51.93 -0.28 0.49 15 4 C -0.52 -14.35 9.47 -34.44 -0.33 -14.67 15 5 H 0.09 2.71 8.06 -52.49 -0.42 2.29 15 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 15 7 N -0.88 -25.89 13.96 55.43 0.77 -25.11 15 8 Si 0.88 20.21 24.37 -169.99 -4.14 16.07 15 9 H -0.27 -6.04 6.87 56.52 0.39 -5.65 15 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 15 11 H -0.27 -5.68 6.53 56.52 0.37 -5.31 15 12 O -0.28 -6.07 9.24 -19.57 -0.18 -6.25 15 13 C 0.17 3.11 6.59 -39.20 -0.26 2.85 15 14 C -0.20 -3.14 8.24 -39.45 -0.33 -3.47 15 15 C -0.06 -0.84 9.82 -39.56 -0.39 -1.23 15 16 C -0.08 -1.07 6.32 -39.49 -0.25 -1.32 15 17 Cl -0.08 -0.86 28.95 -51.86 -1.50 -2.36 15 18 C -0.06 -0.87 9.61 -39.53 -0.38 -1.25 15 19 C -0.07 -1.21 6.33 -39.36 -0.25 -1.46 15 20 Cl -0.05 -0.80 28.50 -51.86 -1.48 -2.28 15 21 H 0.06 1.18 3.27 -51.93 -0.17 1.01 15 22 H 0.04 0.68 6.90 -51.93 -0.36 0.32 15 23 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 25 H 0.15 2.38 5.42 -52.49 -0.28 2.09 15 26 H 0.14 1.48 8.06 -52.49 -0.42 1.06 15 27 H 0.14 1.63 8.06 -52.49 -0.42 1.21 15 LS Contribution 259.42 15.07 3.91 3.91 Total: -1.00 -27.93 259.42 -6.59 -34.51 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -1.96 Total: -0.73 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.00 Total: -17.75 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.77 Total: -25.11 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.18 Total: -6.25 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.14 Total: 16.07 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -2.98 Total: -4.64 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.93 -6.59 -34.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041252101.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.435 kcal (2) G-P(sol) polarization free energy of solvation -27.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds