Wall clock time and date at job start Mon Mar 30 2020 07:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47547 * 2 1 4 4 C 1.50706 * 109.47339 * 120.00314 * 2 1 3 5 5 H 1.07997 * 120.00457 * 119.99846 * 4 2 1 6 6 C 1.37879 * 119.99589 * 299.99684 * 4 2 1 7 7 N 1.31518 * 119.99778 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00154 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47302 * 89.99640 * 8 6 4 10 10 H 1.48499 * 109.46959 * 209.99976 * 8 6 4 11 11 H 1.48504 * 109.46999 * 329.99536 * 8 6 4 12 12 O 1.42900 * 109.47147 * 240.00095 * 2 1 3 13 13 C 1.35945 * 116.99970 * 84.87672 * 12 2 1 14 14 C 1.38695 * 120.04853 * 354.57481 * 13 12 2 15 15 C 1.38144 * 119.97209 * 180.25504 * 14 13 12 16 16 C 1.38382 * 120.06550 * 359.44951 * 15 14 13 17 17 Cl 1.73595 * 119.95519 * 180.25465 * 16 15 14 18 18 C 1.38348 * 120.08739 * 0.55268 * 16 15 14 19 19 C 1.38256 * 120.03362 * 359.72790 * 18 16 15 20 20 Cl 1.73593 * 120.03410 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.47044 * 299.99792 * 1 2 3 22 22 H 1.08997 * 109.47149 * 60.00166 * 1 2 3 23 23 H 1.09003 * 109.47127 * 179.97438 * 1 2 3 24 24 H 0.96994 * 120.00173 * 180.02562 * 7 6 4 25 25 H 1.08002 * 120.01047 * 359.97438 * 14 13 12 26 26 H 1.08001 * 119.96940 * 179.72473 * 15 14 13 27 27 H 1.08000 * 119.98514 * 179.74177 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5566 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.9761 1.9950 3.9068 11 1 0.8472 2.1764 1.4921 12 8 2.0063 -0.6736 -1.1668 13 6 2.1101 0.0622 -2.3051 14 6 1.6558 1.3725 -2.3289 15 6 1.7572 2.1171 -3.4881 16 6 2.3219 1.5608 -4.6223 17 17 2.4539 2.5013 -6.0754 18 6 2.7759 0.2541 -4.6015 19 6 2.6710 -0.4966 -3.4452 20 17 3.2400 -2.1364 -3.4193 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9028 -0.5286 4.4375 25 1 1.2189 1.8089 -1.4429 26 1 1.3994 3.1360 -3.5078 27 1 3.2125 -0.1798 -5.4889 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041252101.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:41 Heat of formation + Delta-G solvation = -41.620949 kcal Electronic energy + Delta-G solvation = -14937.784856 eV Core-core repulsion = 12133.246830 eV Total energy + Delta-G solvation = -2804.538027 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.30727 -38.92259 -37.61883 -37.05136 -35.30353 -32.84028 -31.90594 -30.45893 -27.31102 -24.76757 -23.71455 -22.29655 -19.57094 -18.71798 -17.86549 -17.35444 -16.57292 -16.28972 -15.87149 -15.24086 -14.99672 -14.59217 -14.39207 -13.89011 -13.73547 -13.49207 -13.26291 -12.81780 -12.67940 -12.44359 -12.11069 -11.90197 -11.86605 -11.57810 -11.53984 -11.20762 -10.83319 -10.04317 -9.10067 -8.41061 -6.51335 -0.02694 0.07865 0.88809 1.28401 1.32988 1.33550 1.44368 2.22896 2.32937 2.42711 2.91897 3.66075 3.81818 3.98317 4.16579 4.25674 4.44055 4.48864 4.61521 4.65506 4.76685 5.02237 5.05318 5.32489 5.37162 5.43951 5.94409 6.51918 6.64577 7.12911 8.75825 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.006274 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.904012 B = 4461.728757 C = 5335.111774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.188 3.812 3 H 0.045 0.955 4 C -0.541 4.541 5 H 0.033 0.967 6 C 0.022 3.978 7 N -0.938 5.938 8 Si 0.950 3.050 9 H -0.256 1.256 10 H -0.290 1.290 11 H -0.234 1.234 12 O -0.309 6.309 13 C 0.135 3.865 14 C -0.199 4.199 15 C -0.052 4.052 16 C -0.074 4.074 17 Cl -0.052 7.052 18 C -0.057 4.057 19 C -0.084 4.084 20 Cl -0.059 7.059 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.274 0.726 25 H 0.152 0.848 26 H 0.168 0.832 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 8.525 -17.386 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.133 3.867 3 H 0.063 0.937 4 C -0.578 4.578 5 H 0.052 0.948 6 C -0.177 4.177 7 N -0.576 5.576 8 Si 0.773 3.227 9 H -0.181 1.181 10 H -0.217 1.217 11 H -0.157 1.157 12 O -0.221 6.221 13 C 0.086 3.914 14 C -0.218 4.218 15 C -0.071 4.071 16 C -0.101 4.101 17 Cl -0.023 7.023 18 C -0.076 4.076 19 C -0.112 4.112 20 Cl -0.031 7.031 21 H 0.076 0.924 22 H 0.093 0.907 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.169 0.831 26 H 0.186 0.814 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.467 8.228 -17.270 19.289 hybrid contribution -0.133 -0.001 0.717 0.730 sum -2.601 8.227 -16.553 18.667 Atomic orbital electron populations 1.22607 0.96678 1.02608 1.01416 1.20463 0.91945 0.93414 0.80862 0.93736 1.20961 1.33062 1.13894 0.89917 0.94829 1.25749 0.97036 1.00511 0.94374 1.69999 1.46483 1.42269 0.98896 0.85856 0.79169 0.79005 0.78632 1.18140 1.21723 1.15711 1.86248 1.79949 1.39051 1.16888 1.19349 0.93652 0.91381 0.86972 1.21472 1.06389 0.92956 1.00990 1.21191 0.95263 1.01129 0.89480 1.20578 1.06910 0.92774 0.89873 1.98362 1.96988 1.71773 1.35156 1.20854 0.98092 0.91996 0.96692 1.20184 1.08048 0.88769 0.94210 1.98358 1.87665 1.18324 1.98705 0.92427 0.90722 0.92380 0.91693 0.83069 0.81403 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.88 8.65 71.98 0.62 -6.26 15 2 C 0.19 8.57 1.81 29.85 0.05 8.62 15 3 H 0.05 1.92 5.37 -2.39 -0.01 1.91 15 4 C -0.54 -30.94 9.47 25.60 0.24 -30.69 15 5 H 0.03 2.21 8.06 -2.91 -0.02 2.19 15 6 C 0.02 1.24 5.45 84.65 0.46 1.70 15 7 N -0.94 -57.10 13.96 21.45 0.30 -56.80 15 8 Si 0.95 40.76 24.37 68.60 1.67 42.43 15 9 H -0.26 -10.28 6.87 99.48 0.68 -9.60 15 10 H -0.29 -12.43 7.11 99.48 0.71 -11.73 15 11 H -0.23 -8.74 6.53 99.48 0.65 -8.09 15 12 O -0.31 -13.67 9.24 -92.93 -0.86 -14.53 15 13 C 0.13 4.79 6.59 22.52 0.15 4.94 15 14 C -0.20 -5.82 8.24 22.36 0.18 -5.63 15 15 C -0.05 -1.19 9.82 22.28 0.22 -0.97 15 16 C -0.07 -1.68 6.32 22.33 0.14 -1.54 15 17 Cl -0.05 -0.97 28.95 -2.72 -0.08 -1.05 15 18 C -0.06 -1.41 9.61 22.30 0.21 -1.20 15 19 C -0.08 -2.66 6.33 22.41 0.14 -2.52 15 20 Cl -0.06 -1.93 28.50 -2.72 -0.08 -2.00 15 21 H 0.06 2.22 3.27 -2.39 -0.01 2.22 15 22 H 0.07 2.36 6.90 -2.39 -0.02 2.35 15 23 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 24 H 0.27 15.36 8.31 -92.71 -0.77 14.59 15 25 H 0.15 4.31 5.42 -2.91 -0.02 4.29 15 26 H 0.17 2.76 8.06 -2.91 -0.02 2.74 15 27 H 0.17 3.28 8.06 -2.91 -0.02 3.25 15 Total: -1.00 -63.55 259.42 4.51 -59.04 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.13 Total: 6.45 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 2.43 Total: -33.55 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.30 Total: -56.80 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.86 Total: -14.53 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.67 Total: 42.43 kcal Atomic # 17 Polarization: -2.89 SS G_CDS: -0.16 Total: -3.05 kcal Total: -63.55 4.51 -59.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041252101.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.419 kcal (2) G-P(sol) polarization free energy of solvation -63.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds