Wall clock time and date at job start Mon Mar 30 2020 07:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46990 * 2 1 4 4 C 1.50700 * 109.47027 * 240.00086 * 2 1 3 5 5 H 1.07995 * 120.00319 * 240.00321 * 4 2 1 6 6 C 1.37883 * 119.99523 * 59.99824 * 4 2 1 7 7 N 1.31515 * 120.00565 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99584 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47059 * 89.99971 * 8 6 4 10 10 H 1.48497 * 109.47183 * 210.00126 * 8 6 4 11 11 H 1.48502 * 109.47039 * 330.00557 * 8 6 4 12 12 O 1.42895 * 109.47013 * 120.00138 * 2 1 3 13 13 C 1.35951 * 117.00057 * 274.98363 * 12 2 1 14 14 C 1.38696 * 120.04549 * 5.49411 * 13 12 2 15 15 C 1.38149 * 119.96809 * 180.27740 * 14 13 12 16 16 C 1.38375 * 120.06269 * 359.44329 * 15 14 13 17 17 Cl 1.73597 * 119.95386 * 180.27727 * 16 15 14 18 18 C 1.38344 * 120.09698 * 0.30525 * 16 15 14 19 19 C 1.38265 * 120.02630 * 359.97177 * 18 16 15 20 20 Cl 1.73600 * 120.02954 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.46990 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46975 * 299.99879 * 1 2 3 23 23 H 1.08996 * 109.47242 * 59.99831 * 1 2 3 24 24 H 0.96991 * 119.99666 * 179.97438 * 7 6 4 25 25 H 1.08000 * 120.01653 * 0.02562 * 14 13 12 26 26 H 1.07996 * 119.96603 * 179.72653 * 15 14 13 27 27 H 1.08003 * 119.99104 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4871 -0.1401 -5.1121 11 1 3.6307 -1.7565 -3.7120 12 8 2.0063 -0.6736 1.1667 13 6 2.1128 0.0629 2.3044 14 6 1.6599 1.3736 2.3281 15 6 1.7742 2.1225 3.4834 16 6 2.3295 1.5624 4.6204 17 17 2.4652 2.5037 6.0727 18 6 2.7774 0.2536 4.6013 19 6 2.6702 -0.4975 3.4455 20 17 3.2328 -2.1397 3.4212 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 0.7086 1.1613 -3.4843 25 1 1.2218 1.8099 1.4426 26 1 1.4255 3.1445 3.5005 27 1 3.2110 -0.1816 5.4896 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041252103.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:44 Heat of formation + Delta-G solvation = -35.830107 kcal Electronic energy + Delta-G solvation = -14861.344875 eV Core-core repulsion = 12057.057958 eV Total energy + Delta-G solvation = -2804.286917 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.77488 -37.39334 -36.34888 -35.79431 -33.43551 -30.84688 -29.99599 -28.79610 -25.42288 -23.17590 -22.33433 -20.65692 -17.85403 -16.81440 -16.25849 -15.62661 -14.72415 -14.67329 -14.46148 -13.86268 -13.35022 -13.06731 -12.38636 -12.22550 -12.01174 -11.61040 -11.41930 -11.16234 -10.97190 -10.84068 -10.70669 -10.58347 -10.38842 -10.28021 -9.96210 -9.13702 -8.75095 -8.61992 -7.64263 -6.29830 -4.35444 1.25497 1.41806 2.09877 2.60337 3.19936 3.26051 3.30317 3.72157 3.96004 4.34447 4.95974 5.04417 5.08841 5.29908 5.58296 5.83388 5.96831 6.21618 6.37974 6.46107 6.64403 6.67494 6.77039 7.10723 7.55004 7.66644 7.97791 8.27820 8.74607 9.30747 10.77991 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.005568 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.590182 B = 5027.416257 C = 5733.434411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.205 3.795 3 H 0.037 0.963 4 C -0.517 4.517 5 H 0.071 0.929 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.912 3.088 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.294 6.294 13 C 0.176 3.824 14 C -0.193 4.193 15 C -0.063 4.063 16 C -0.084 4.084 17 Cl -0.079 7.079 18 C -0.066 4.066 19 C -0.079 4.079 20 Cl -0.056 7.056 21 H 0.041 0.959 22 H 0.018 0.982 23 H 0.100 0.900 24 H 0.267 0.733 25 H 0.154 0.846 26 H 0.135 0.865 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 1.823 12.034 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.152 3.848 3 H 0.054 0.946 4 C -0.555 4.555 5 H 0.089 0.911 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.739 3.261 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 O -0.206 6.206 13 C 0.125 3.875 14 C -0.212 4.212 15 C -0.082 4.082 16 C -0.111 4.111 17 Cl -0.050 7.050 18 C -0.085 4.085 19 C -0.107 4.107 20 Cl -0.027 7.027 21 H 0.060 0.940 22 H 0.037 0.963 23 H 0.118 0.882 24 H 0.077 0.923 25 H 0.172 0.828 26 H 0.153 0.847 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.515 1.661 11.936 12.146 hybrid contribution 0.180 -0.200 -0.752 0.799 sum 1.695 1.461 11.184 11.405 Atomic orbital electron populations 1.22350 0.97819 1.00905 1.01396 1.20446 0.91520 0.93529 0.79335 0.94557 1.20964 1.32362 1.13605 0.88556 0.91121 1.24860 0.94796 0.95066 0.99089 1.69856 1.36126 1.22613 1.24348 0.86261 0.79437 0.79182 0.81261 1.20304 1.20933 1.19533 1.86299 1.78612 1.38973 1.16683 1.19024 0.90672 0.90100 0.87675 1.21487 1.05901 0.93770 1.00027 1.20899 0.96566 1.00089 0.90655 1.20398 1.09030 0.92806 0.88889 1.98333 1.97191 1.72592 1.36917 1.20576 0.99072 0.91932 0.96927 1.19988 1.08351 0.88420 0.93898 1.98348 1.87870 1.17772 1.98690 0.93975 0.96301 0.88174 0.92324 0.82849 0.84685 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 8.95 37.16 0.33 -3.50 15 2 C 0.21 5.00 2.22 -27.88 -0.06 4.94 15 3 H 0.04 0.92 6.31 -51.93 -0.33 0.59 15 4 C -0.52 -13.89 8.89 -34.44 -0.31 -14.20 15 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 15 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 7 N -0.89 -23.81 11.32 55.43 0.63 -23.18 15 8 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 15 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 12 O -0.29 -6.70 9.24 -19.59 -0.18 -6.88 15 13 C 0.18 3.40 6.59 -39.20 -0.26 3.14 15 14 C -0.19 -3.35 8.24 -39.44 -0.33 -3.68 15 15 C -0.06 -0.92 9.82 -39.56 -0.39 -1.31 15 16 C -0.08 -1.19 6.32 -39.49 -0.25 -1.44 15 17 Cl -0.08 -0.96 28.95 -51.86 -1.50 -2.47 15 18 C -0.07 -0.96 9.61 -39.53 -0.38 -1.34 15 19 C -0.08 -1.35 6.33 -39.36 -0.25 -1.60 15 20 Cl -0.06 -0.92 28.50 -51.86 -1.48 -2.40 15 21 H 0.04 0.97 8.14 -51.93 -0.42 0.54 15 22 H 0.02 0.37 6.91 -51.93 -0.36 0.01 15 23 H 0.10 2.47 6.07 -51.93 -0.32 2.16 15 24 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 25 H 0.15 2.76 5.43 -52.49 -0.28 2.47 15 26 H 0.14 1.64 8.06 -52.49 -0.42 1.22 15 27 H 0.14 1.73 8.06 -52.48 -0.42 1.30 15 LS Contribution 266.25 15.07 4.01 4.01 Total: -1.00 -26.29 266.25 -7.62 -33.91 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -2.10 Total: -1.11 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -1.98 Total: -17.40 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.63 Total: -23.18 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.18 Total: -6.88 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -2.98 Total: -4.87 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -26.29 -7.62 -33.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041252103.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.918 kcal (2) G-P(sol) polarization free energy of solvation -26.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds