Wall clock time and date at job start Mon Mar 30 2020 07:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46990 * 2 1 4 4 C 1.50700 * 109.47027 * 240.00086 * 2 1 3 5 5 H 1.07995 * 120.00319 * 240.00321 * 4 2 1 6 6 C 1.37883 * 119.99523 * 59.99824 * 4 2 1 7 7 N 1.31515 * 120.00565 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99584 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47059 * 89.99971 * 8 6 4 10 10 H 1.48497 * 109.47183 * 210.00126 * 8 6 4 11 11 H 1.48502 * 109.47039 * 330.00557 * 8 6 4 12 12 O 1.42895 * 109.47013 * 120.00138 * 2 1 3 13 13 C 1.35951 * 117.00057 * 274.98363 * 12 2 1 14 14 C 1.38696 * 120.04549 * 5.49411 * 13 12 2 15 15 C 1.38149 * 119.96809 * 180.27740 * 14 13 12 16 16 C 1.38375 * 120.06269 * 359.44329 * 15 14 13 17 17 Cl 1.73597 * 119.95386 * 180.27727 * 16 15 14 18 18 C 1.38344 * 120.09698 * 0.30525 * 16 15 14 19 19 C 1.38265 * 120.02630 * 359.97177 * 18 16 15 20 20 Cl 1.73600 * 120.02954 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.46990 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46975 * 299.99879 * 1 2 3 23 23 H 1.08996 * 109.47242 * 59.99831 * 1 2 3 24 24 H 0.96991 * 119.99666 * 179.97438 * 7 6 4 25 25 H 1.08000 * 120.01653 * 0.02562 * 14 13 12 26 26 H 1.07996 * 119.96603 * 179.72653 * 15 14 13 27 27 H 1.08003 * 119.99104 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4871 -0.1401 -5.1121 11 1 3.6307 -1.7565 -3.7120 12 8 2.0063 -0.6736 1.1667 13 6 2.1128 0.0629 2.3044 14 6 1.6599 1.3736 2.3281 15 6 1.7742 2.1225 3.4834 16 6 2.3295 1.5624 4.6204 17 17 2.4652 2.5037 6.0727 18 6 2.7774 0.2536 4.6013 19 6 2.6702 -0.4975 3.4455 20 17 3.2328 -2.1397 3.4212 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 0.7086 1.1613 -3.4843 25 1 1.2218 1.8099 1.4426 26 1 1.4255 3.1445 3.5005 27 1 3.2110 -0.1816 5.4896 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041252103.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:44 Heat of formation + Delta-G solvation = -48.696948 kcal Electronic energy + Delta-G solvation = -14861.902823 eV Core-core repulsion = 12057.057958 eV Total energy + Delta-G solvation = -2804.844865 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.20311 -38.82118 -37.59764 -37.02872 -35.35608 -32.25410 -31.61320 -30.27533 -27.40554 -24.63308 -23.68472 -22.30653 -19.32940 -18.63588 -17.68101 -17.18296 -16.44078 -16.18294 -15.83086 -15.18926 -15.00739 -14.44341 -13.99147 -13.57369 -13.41459 -13.21157 -13.12378 -12.80874 -12.69133 -12.34002 -12.22520 -12.11201 -11.87530 -11.79649 -11.53846 -11.01498 -10.58989 -10.01912 -9.04754 -8.29224 -6.42621 -0.00454 0.11795 0.89386 1.34627 1.41779 1.42274 1.53387 2.26356 2.43333 2.62935 3.02429 3.70532 3.88081 4.00903 4.28366 4.48073 4.60867 4.71651 4.79235 4.86867 5.02947 5.12717 5.24562 5.43574 5.55779 5.72837 6.04392 6.49672 6.78455 7.27841 8.77726 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.005568 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.590182 B = 5027.416257 C = 5733.434411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.212 3.788 3 H 0.023 0.977 4 C -0.547 4.547 5 H 0.056 0.944 6 C 0.025 3.975 7 N -0.910 5.910 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.271 1.271 12 O -0.317 6.317 13 C 0.139 3.861 14 C -0.200 4.200 15 C -0.055 4.055 16 C -0.076 4.076 17 Cl -0.052 7.052 18 C -0.057 4.057 19 C -0.085 4.085 20 Cl -0.056 7.056 21 H 0.033 0.967 22 H 0.040 0.960 23 H 0.082 0.918 24 H 0.271 0.729 25 H 0.142 0.858 26 H 0.163 0.837 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 2.456 13.290 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.158 3.842 3 H 0.040 0.960 4 C -0.585 4.585 5 H 0.074 0.926 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.196 1.196 12 O -0.230 6.230 13 C 0.091 3.909 14 C -0.219 4.219 15 C -0.073 4.073 16 C -0.103 4.103 17 Cl -0.023 7.023 18 C -0.076 4.076 19 C -0.113 4.113 20 Cl -0.028 7.028 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.100 0.900 24 H 0.080 0.920 25 H 0.160 0.840 26 H 0.181 0.819 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.772 2.304 13.219 13.535 hybrid contribution 0.127 -0.308 -0.944 1.001 sum 1.899 1.997 12.275 12.580 Atomic orbital electron populations 1.22156 0.97164 1.00289 1.01503 1.20143 0.91913 0.92481 0.79673 0.95986 1.21233 1.33085 1.13786 0.90374 0.92560 1.25604 0.94758 0.95667 1.01517 1.69939 1.36392 1.23300 1.25149 0.85354 0.78835 0.78339 0.77967 1.19658 1.19955 1.19585 1.86212 1.79844 1.39627 1.17282 1.19341 0.93158 0.91149 0.87297 1.21439 1.06291 0.93375 1.00779 1.21146 0.95527 1.00978 0.89663 1.20532 1.07269 0.92804 0.89662 1.98353 1.96976 1.71815 1.35146 1.20853 0.98109 0.91884 0.96767 1.20157 1.08372 0.88731 0.94043 1.98343 1.87845 1.17874 1.98706 0.94803 0.94092 0.89978 0.91967 0.84030 0.81915 0.81501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.20 8.95 71.98 0.64 -6.56 15 2 C 0.21 10.65 2.22 29.85 0.07 10.71 15 3 H 0.02 1.17 6.31 -2.39 -0.02 1.15 15 4 C -0.55 -30.21 8.89 25.60 0.23 -29.98 15 5 H 0.06 3.18 7.81 -2.91 -0.02 3.15 15 6 C 0.02 1.32 5.30 84.66 0.45 1.77 15 7 N -0.91 -49.08 11.32 21.45 0.24 -48.84 15 8 Si 0.97 42.22 29.54 68.60 2.03 44.25 15 9 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 12 O -0.32 -14.83 9.24 -93.00 -0.86 -15.69 15 13 C 0.14 5.41 6.59 22.51 0.15 5.56 15 14 C -0.20 -6.86 8.24 22.36 0.18 -6.67 15 15 C -0.05 -1.47 9.82 22.28 0.22 -1.25 15 16 C -0.08 -1.92 6.32 22.33 0.14 -1.78 15 17 Cl -0.05 -1.08 28.95 -2.72 -0.08 -1.16 15 18 C -0.06 -1.52 9.61 22.30 0.21 -1.31 15 19 C -0.09 -2.86 6.33 22.41 0.14 -2.71 15 20 Cl -0.06 -1.85 28.50 -2.72 -0.08 -1.93 15 21 H 0.03 1.58 8.14 -2.39 -0.02 1.56 15 22 H 0.04 1.67 6.91 -2.39 -0.02 1.66 15 23 H 0.08 4.14 6.07 -2.39 -0.01 4.13 15 24 H 0.27 13.74 8.31 -92.71 -0.77 12.97 15 25 H 0.14 5.17 5.43 -2.91 -0.02 5.15 15 26 H 0.16 3.44 8.06 -2.91 -0.02 3.42 15 27 H 0.17 3.54 8.06 -2.91 -0.02 3.52 15 Total: -1.00 -56.30 266.25 4.89 -51.41 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.20 Total: 4.19 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 2.44 Total: -32.23 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.24 Total: -48.84 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.86 Total: -15.69 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -2.93 SS G_CDS: -0.16 Total: -3.09 kcal Total: -56.30 4.89 -51.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041252103.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.714 kcal (2) G-P(sol) polarization free energy of solvation -56.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds