Wall clock time and date at job start Mon Mar 30 2020 07:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50706 * 109.47157 * 120.00064 * 2 1 3 5 5 H 1.07997 * 120.00309 * 120.00148 * 4 2 1 6 6 C 1.37881 * 119.99753 * 300.00324 * 4 2 1 7 7 N 1.31518 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99825 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47628 * 89.99533 * 8 6 4 10 10 H 1.48499 * 109.47088 * 209.99423 * 8 6 4 11 11 H 1.48502 * 109.46923 * 329.99465 * 8 6 4 12 12 O 1.42900 * 109.47220 * 239.99892 * 2 1 3 13 13 C 1.35924 * 116.99866 * 84.87628 * 12 2 1 14 14 C 1.38727 * 120.05484 * 354.58160 * 13 12 2 15 15 C 1.38150 * 119.98042 * 180.27398 * 14 13 12 16 16 C 1.38254 * 120.09111 * 359.74639 * 15 14 13 17 17 C 1.38366 * 120.10798 * 359.95402 * 16 15 14 18 18 Cl 1.73595 * 119.99587 * 180.02562 * 17 16 15 19 19 C 1.38371 * 120.01032 * 0.04439 * 17 16 15 20 20 Cl 1.73606 * 120.03887 * 179.97438 * 19 17 16 21 21 H 1.08996 * 109.47560 * 60.00219 * 1 2 3 22 22 H 1.09004 * 109.47409 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47477 * 299.99944 * 1 2 3 24 24 H 0.96999 * 119.99634 * 180.02562 * 7 6 4 25 25 H 1.07998 * 120.00645 * 359.97438 * 14 13 12 26 26 H 1.08005 * 119.95183 * 179.72144 * 15 14 13 27 27 H 1.08006 * 119.95102 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.6304 -0.5441 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4879 -2.5654 3.7122 12 8 2.0063 -0.6737 -1.1668 13 6 2.1100 0.0621 -2.3049 14 6 1.6558 1.3727 -2.3289 15 6 1.7569 2.1172 -3.4882 16 6 2.3149 1.5598 -4.6236 17 6 2.7748 0.2549 -4.6021 18 17 3.4756 -0.4419 -6.0293 19 6 2.6758 -0.4947 -3.4433 20 17 3.2519 -2.1322 -3.4157 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.7093 1.1618 3.4844 25 1 1.2190 1.8092 -1.4429 26 1 1.3990 3.1361 -3.5076 27 1 2.3924 2.1438 -5.5289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041252105.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:46 Heat of formation + Delta-G solvation = -34.363610 kcal Electronic energy + Delta-G solvation = -14946.147871 eV Core-core repulsion = 12141.924546 eV Total energy + Delta-G solvation = -2804.223325 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.74500 -37.39471 -36.15692 -36.00749 -33.43850 -30.64355 -29.91913 -28.97205 -25.41642 -23.04666 -22.41545 -20.63113 -17.84289 -16.81585 -15.98833 -15.63747 -14.96458 -14.66993 -14.50217 -13.90909 -13.31106 -13.11850 -12.45404 -11.90786 -11.67262 -11.49942 -11.41003 -11.09864 -11.05411 -10.92816 -10.84047 -10.52036 -10.36251 -10.28073 -10.01624 -9.12763 -8.61398 -8.51789 -7.72108 -6.29116 -4.34480 1.18796 1.52831 2.03103 2.56523 3.20467 3.26576 3.31395 3.75887 4.00720 4.37136 5.04858 5.05345 5.15401 5.36599 5.52799 5.65789 6.10777 6.28077 6.47845 6.52164 6.66017 6.69036 6.79789 7.12253 7.55812 7.67714 7.98706 8.29552 8.75777 9.31606 10.78763 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.034039 B = 0.005770 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.381941 B = 4851.934025 C = 5447.229995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.206 3.794 3 H 0.037 0.963 4 C -0.516 4.516 5 H 0.071 0.929 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.294 6.294 13 C 0.180 3.820 14 C -0.200 4.200 15 C -0.064 4.064 16 C -0.162 4.162 17 C 0.006 3.994 18 Cl -0.060 7.060 19 C -0.086 4.086 20 Cl -0.048 7.048 21 H 0.018 0.982 22 H 0.041 0.959 23 H 0.100 0.900 24 H 0.267 0.733 25 H 0.150 0.850 26 H 0.135 0.865 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 1.882 -12.227 12.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.152 3.848 3 H 0.054 0.946 4 C -0.554 4.554 5 H 0.089 0.911 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.739 3.261 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 O -0.206 6.206 13 C 0.130 3.870 14 C -0.219 4.219 15 C -0.083 4.083 16 C -0.181 4.181 17 C -0.021 4.021 18 Cl -0.031 7.031 19 C -0.114 4.114 20 Cl -0.019 7.019 21 H 0.037 0.963 22 H 0.060 0.940 23 H 0.118 0.882 24 H 0.077 0.923 25 H 0.168 0.832 26 H 0.152 0.848 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.580 1.565 -12.131 12.333 hybrid contribution 0.242 -0.343 0.770 0.877 sum 1.822 1.222 -11.361 11.571 Atomic orbital electron populations 1.22346 0.97835 1.00891 1.01368 1.20443 0.91513 0.93523 0.79272 0.94566 1.20966 1.32287 1.13612 0.88544 0.91120 1.24858 0.94779 0.95104 0.99086 1.69861 1.36147 1.22657 1.24327 0.86257 0.78558 0.80058 0.81246 1.20336 1.20925 1.19517 1.86286 1.78791 1.38998 1.16540 1.18760 0.90854 0.90055 0.87349 1.21644 1.05727 0.93808 1.00692 1.20951 0.96218 0.99651 0.91471 1.20737 1.04175 0.93126 1.00043 1.20406 1.00887 0.93839 0.87015 1.98354 1.82651 1.84623 1.37503 1.19930 1.09160 0.88972 0.93372 1.98349 1.87239 1.17636 1.98648 0.96314 0.93986 0.88182 0.92344 0.83222 0.84762 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 8.95 37.16 0.33 -3.52 15 2 C 0.21 5.06 2.22 -27.88 -0.06 5.00 15 3 H 0.04 0.92 6.32 -51.93 -0.33 0.59 15 4 C -0.52 -13.95 8.89 -34.44 -0.31 -14.26 15 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 15 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 7 N -0.89 -23.88 11.32 55.43 0.63 -23.26 15 8 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 15 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 12 O -0.29 -6.82 9.24 -19.50 -0.18 -7.00 15 13 C 0.18 3.57 6.59 -39.20 -0.26 3.31 15 14 C -0.20 -3.47 8.24 -39.43 -0.32 -3.80 15 15 C -0.06 -0.89 10.04 -39.61 -0.40 -1.29 15 16 C -0.16 -2.18 9.83 -39.53 -0.39 -2.57 15 17 C 0.01 0.09 6.32 -39.49 -0.25 -0.15 15 18 Cl -0.06 -0.82 27.96 -51.86 -1.45 -2.27 15 19 C -0.09 -1.56 6.34 -39.33 -0.25 -1.81 15 20 Cl -0.05 -0.85 27.51 -51.86 -1.43 -2.27 15 21 H 0.02 0.37 6.90 -51.93 -0.36 0.01 15 22 H 0.04 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.10 2.48 6.07 -51.93 -0.32 2.16 15 24 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 25 H 0.15 2.69 5.42 -52.49 -0.28 2.41 15 26 H 0.13 1.42 8.06 -52.48 -0.42 1.00 15 27 H 0.13 1.43 8.06 -52.48 -0.42 1.01 15 LS Contribution 264.69 15.07 3.99 3.99 Total: -1.00 -26.88 264.69 -7.56 -34.44 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -2.10 Total: -1.74 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.00 Total: -17.50 kcal Atomic # 7 Polarization: -23.88 SS G_CDS: 0.63 Total: -23.26 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.18 Total: -7.00 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -2.88 Total: -4.55 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -26.88 -7.56 -34.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041252105.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.075 kcal (2) G-P(sol) polarization free energy of solvation -26.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds