Wall clock time and date at job start Mon Mar 30 2020 07:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50706 * 109.47157 * 120.00064 * 2 1 3 5 5 H 1.07997 * 120.00309 * 120.00148 * 4 2 1 6 6 C 1.37881 * 119.99753 * 300.00324 * 4 2 1 7 7 N 1.31518 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99825 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47628 * 89.99533 * 8 6 4 10 10 H 1.48499 * 109.47088 * 209.99423 * 8 6 4 11 11 H 1.48502 * 109.46923 * 329.99465 * 8 6 4 12 12 O 1.42900 * 109.47220 * 239.99892 * 2 1 3 13 13 C 1.35924 * 116.99866 * 84.87628 * 12 2 1 14 14 C 1.38727 * 120.05484 * 354.58160 * 13 12 2 15 15 C 1.38150 * 119.98042 * 180.27398 * 14 13 12 16 16 C 1.38254 * 120.09111 * 359.74639 * 15 14 13 17 17 C 1.38366 * 120.10798 * 359.95402 * 16 15 14 18 18 Cl 1.73595 * 119.99587 * 180.02562 * 17 16 15 19 19 C 1.38371 * 120.01032 * 0.04439 * 17 16 15 20 20 Cl 1.73606 * 120.03887 * 179.97438 * 19 17 16 21 21 H 1.08996 * 109.47560 * 60.00219 * 1 2 3 22 22 H 1.09004 * 109.47409 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47477 * 299.99944 * 1 2 3 24 24 H 0.96999 * 119.99634 * 180.02562 * 7 6 4 25 25 H 1.07998 * 120.00645 * 359.97438 * 14 13 12 26 26 H 1.08005 * 119.95183 * 179.72144 * 15 14 13 27 27 H 1.08006 * 119.95102 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.6304 -0.5441 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4879 -2.5654 3.7122 12 8 2.0063 -0.6737 -1.1668 13 6 2.1100 0.0621 -2.3049 14 6 1.6558 1.3727 -2.3289 15 6 1.7569 2.1172 -3.4882 16 6 2.3149 1.5598 -4.6236 17 6 2.7748 0.2549 -4.6021 18 17 3.4756 -0.4419 -6.0293 19 6 2.6758 -0.4947 -3.4433 20 17 3.2519 -2.1322 -3.4157 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.7093 1.1618 3.4844 25 1 1.2190 1.8092 -1.4429 26 1 1.3990 3.1361 -3.5076 27 1 2.3924 2.1438 -5.5289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041252105.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:46 Heat of formation + Delta-G solvation = -48.113895 kcal Electronic energy + Delta-G solvation = -14946.744128 eV Core-core repulsion = 12141.924546 eV Total energy + Delta-G solvation = -2804.819582 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17331 -38.82699 -37.42878 -37.31210 -35.36917 -32.17758 -31.35972 -30.49389 -27.40942 -24.54040 -23.71117 -22.28543 -19.32723 -18.65071 -17.43425 -17.16491 -16.41610 -16.33833 -16.01467 -15.19185 -14.92947 -14.56713 -14.06756 -13.50565 -13.25134 -12.99586 -12.85332 -12.81339 -12.67380 -12.35051 -12.28895 -12.12504 -12.06026 -11.75093 -11.67777 -11.03193 -10.59352 -9.77536 -9.15229 -8.29622 -6.42803 -0.07348 0.24814 0.80397 1.25424 1.41093 1.41802 1.53145 2.27801 2.49509 2.67158 3.02017 3.86949 3.94253 4.07094 4.29191 4.38387 4.53066 4.79150 4.86006 4.95691 5.13129 5.23910 5.29663 5.52770 5.57612 5.73423 6.04280 6.50150 6.79134 7.27586 8.77421 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.034039 B = 0.005770 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.381941 B = 4851.934025 C = 5447.229995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.213 3.787 3 H 0.023 0.977 4 C -0.547 4.547 5 H 0.054 0.946 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.272 1.272 12 O -0.319 6.319 13 C 0.142 3.858 14 C -0.210 4.210 15 C -0.049 4.049 16 C -0.141 4.141 17 C 0.000 4.000 18 Cl -0.042 7.042 19 C -0.100 4.100 20 Cl -0.056 7.056 21 H 0.041 0.959 22 H 0.031 0.969 23 H 0.082 0.918 24 H 0.271 0.729 25 H 0.138 0.862 26 H 0.176 0.824 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 3.082 -13.526 13.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.159 3.841 3 H 0.041 0.959 4 C -0.585 4.585 5 H 0.073 0.927 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.197 1.197 12 O -0.233 6.233 13 C 0.093 3.907 14 C -0.229 4.229 15 C -0.067 4.067 16 C -0.159 4.159 17 C -0.027 4.027 18 Cl -0.013 7.013 19 C -0.129 4.129 20 Cl -0.028 7.028 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.156 0.844 26 H 0.194 0.806 27 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.662 2.774 -13.456 13.839 hybrid contribution 0.247 -0.645 0.989 1.207 sum 1.909 2.129 -12.466 12.790 Atomic orbital electron populations 1.22149 0.97132 1.00215 1.01535 1.20143 0.91935 0.92479 0.79559 0.95926 1.21226 1.33069 1.13775 0.90427 0.92732 1.25595 0.94730 0.95707 1.01471 1.69940 1.36343 1.23289 1.25156 0.85355 0.78378 0.78772 0.77991 1.19673 1.19815 1.19694 1.86194 1.80073 1.39781 1.17226 1.19076 0.93472 0.91313 0.86836 1.21695 1.06100 0.93247 1.01841 1.21393 0.94506 1.00944 0.89889 1.21252 1.01320 0.92175 1.01189 1.20638 1.00764 0.94483 0.86850 1.98363 1.82316 1.84595 1.36048 1.20129 1.09754 0.89014 0.93963 1.98336 1.87364 1.18369 1.98697 0.94026 0.94946 0.89916 0.91942 0.84414 0.80624 0.80718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.21 8.95 71.98 0.64 -6.56 15 2 C 0.21 10.81 2.22 29.85 0.07 10.87 15 3 H 0.02 1.20 6.32 -2.39 -0.02 1.19 15 4 C -0.55 -30.53 8.89 25.60 0.23 -30.30 15 5 H 0.05 3.12 7.81 -2.91 -0.02 3.10 15 6 C 0.03 1.35 5.30 84.65 0.45 1.80 15 7 N -0.91 -49.14 11.32 21.45 0.24 -48.90 15 8 Si 0.97 42.50 29.54 68.60 2.03 44.53 15 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 10 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 15 12 O -0.32 -15.32 9.24 -92.70 -0.86 -16.17 15 13 C 0.14 5.64 6.59 22.52 0.15 5.79 15 14 C -0.21 -7.10 8.24 22.37 0.18 -6.92 15 15 C -0.05 -1.20 10.04 22.25 0.22 -0.97 15 16 C -0.14 -3.23 9.83 22.30 0.22 -3.01 15 17 C 0.00 0.01 6.32 22.33 0.14 0.15 15 18 Cl -0.04 -1.05 27.96 -2.72 -0.08 -1.13 15 19 C -0.10 -3.58 6.34 22.43 0.14 -3.44 15 20 Cl -0.06 -2.02 27.51 -2.72 -0.07 -2.10 15 21 H 0.04 1.70 6.90 -2.39 -0.02 1.69 15 22 H 0.03 1.53 8.14 -2.39 -0.02 1.51 15 23 H 0.08 4.18 6.07 -2.38 -0.01 4.17 15 24 H 0.27 13.76 8.31 -92.71 -0.77 12.99 15 25 H 0.14 4.96 5.42 -2.91 -0.02 4.94 15 26 H 0.18 2.81 8.06 -2.91 -0.02 2.79 15 27 H 0.18 2.67 8.06 -2.91 -0.02 2.64 15 Total: -1.00 -58.99 264.69 4.91 -54.09 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 1.20 Total: 2.27 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 2.45 Total: -32.58 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.24 Total: -48.90 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.86 Total: -16.17 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 17 Polarization: -3.08 SS G_CDS: -0.15 Total: -3.23 kcal Total: -58.99 4.91 -54.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041252105.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.972 kcal (2) G-P(sol) polarization free energy of solvation -58.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds