Wall clock time and date at job start Mon Mar 30 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09011 * 109.50278 * 2 1 4 4 C 1.53116 * 109.50463 * 120.07787 * 2 1 3 5 5 C 1.53125 * 109.16020 * 177.60010 * 4 2 1 6 6 C 1.53044 * 109.27491 * 302.34466 * 5 4 2 7 7 N 1.46847 * 109.52276 * 59.18203 * 6 5 4 8 8 C 1.46894 * 110.99785 * 174.15647 * 7 6 5 9 9 H 1.08996 * 109.47229 * 63.95578 * 8 7 6 10 10 C 1.50710 * 109.47094 * 183.95322 * 8 7 6 11 11 H 1.07993 * 119.99754 * 234.52051 * 10 8 7 12 12 C 1.37878 * 119.99712 * 54.51960 * 10 8 7 13 13 N 1.31518 * 120.00037 * 349.75123 * 12 10 8 14 14 Si 1.86800 * 119.99823 * 169.74615 * 12 10 8 15 15 H 1.48503 * 109.46769 * 89.99994 * 14 12 10 16 16 H 1.48493 * 109.47212 * 210.00200 * 14 12 10 17 17 H 1.48495 * 109.46949 * 330.00410 * 14 12 10 18 18 C 1.50702 * 109.47333 * 303.95187 * 8 7 6 19 19 C 1.38237 * 119.99796 * 148.14281 * 18 8 7 20 20 C 1.38230 * 119.99929 * 179.74616 * 19 18 8 21 21 C 1.38238 * 119.99921 * 0.55208 * 20 19 18 22 22 C 1.38238 * 119.99924 * 359.70234 * 21 20 19 23 23 C 1.38226 * 120.00074 * 328.41936 * 18 8 7 24 24 C 1.46848 * 111.23366 * 298.27345 * 7 6 5 25 25 H 1.08998 * 109.47300 * 299.99683 * 1 2 3 26 26 H 1.08994 * 109.47154 * 60.00138 * 1 2 3 27 27 H 1.08999 * 109.46547 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.52745 * 297.50299 * 4 2 1 29 29 H 1.09000 * 109.52129 * 57.63097 * 4 2 1 30 30 H 1.08994 * 109.50398 * 62.28738 * 5 4 2 31 31 H 1.08999 * 109.50093 * 182.41062 * 5 4 2 32 32 H 1.08998 * 109.45980 * 179.19370 * 6 5 4 33 33 H 1.08993 * 109.46257 * 299.16223 * 6 5 4 34 34 H 0.96999 * 119.99474 * 179.97438 * 13 12 10 35 35 H 1.08005 * 120.00156 * 359.97438 * 19 18 8 36 36 H 1.08008 * 120.00334 * 180.27155 * 20 19 18 37 37 H 1.07998 * 119.99980 * 179.72470 * 21 20 19 38 38 H 1.07995 * 119.99654 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.00175 * 0.02562 * 23 18 8 40 40 H 1.08999 * 109.42650 * 301.68965 * 24 7 6 41 41 H 1.08991 * 109.49882 * 181.71594 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0276 0.0000 4 6 2.0412 -0.7233 1.2490 5 6 3.5712 -0.7714 1.2110 6 6 4.0230 -1.4729 -0.0720 7 7 3.5093 -0.7424 -1.2377 8 6 4.0373 -1.3065 -2.4870 9 1 3.6794 -2.3293 -2.6036 10 6 3.5675 -0.4740 -3.6521 11 1 3.0467 -0.9415 -4.4746 12 6 3.8027 0.8845 -3.6680 13 7 4.2519 1.4868 -2.5885 14 14 3.4835 1.8696 -5.2227 15 1 2.0829 2.3633 -5.2169 16 1 4.4153 3.0245 -5.2770 17 1 3.6983 1.0039 -6.4100 18 6 5.5437 -1.3033 -2.4424 19 6 6.2564 -2.2937 -3.0921 20 6 7.6382 -2.2879 -3.0557 21 6 8.3071 -1.2982 -2.3600 22 6 7.5943 -0.3108 -1.7059 23 6 6.2125 -0.3134 -1.7471 24 6 2.0410 -0.7229 -1.2484 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.7157 -0.1863 2.1399 29 1 1.6444 -1.7383 1.2701 30 1 3.9678 0.2437 1.2297 31 1 3.9396 -1.3227 2.0762 32 1 5.1121 -1.4960 -0.1090 33 1 3.6376 -2.4923 -0.0835 34 1 4.4177 2.4424 -2.5999 35 1 5.7337 -3.0700 -3.6313 36 1 8.1952 -3.0592 -3.5670 37 1 9.3866 -1.2962 -2.3278 38 1 8.1169 0.4626 -1.1627 39 1 5.6556 0.4575 -1.2355 40 1 1.6649 -1.7459 -1.2551 41 1 1.6905 -0.2014 -2.1390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055019917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:41 Heat of formation + Delta-G solvation = 24.760453 kcal Electronic energy + Delta-G solvation = -20487.823771 eV Core-core repulsion = 17753.105888 eV Total energy + Delta-G solvation = -2734.717883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.85424 -37.48731 -34.29415 -32.14620 -30.94327 -29.98940 -29.63072 -26.64979 -25.77262 -23.67350 -21.86052 -21.30690 -21.07426 -19.55220 -18.80241 -16.35867 -15.66747 -15.00878 -14.65235 -14.20263 -13.92776 -13.71882 -13.33240 -13.26935 -13.07786 -12.32394 -12.22265 -12.07866 -11.90862 -11.75979 -11.53061 -11.15774 -10.92986 -10.88937 -10.67233 -10.44628 -10.30260 -10.05018 -9.97723 -9.64446 -9.62924 -9.27310 -9.09539 -8.43360 -7.82477 -7.39693 -6.72964 -5.87044 -4.05604 2.46115 2.56074 3.30191 3.38345 3.42585 4.43635 4.91308 5.10414 5.35719 5.41300 5.54888 5.61799 5.79420 5.80790 5.92067 5.99404 6.06909 6.11777 6.25778 6.28928 6.33957 6.38703 6.43625 6.48628 6.57252 6.61837 6.73342 6.76789 6.83760 6.89427 6.96893 7.09221 7.16577 7.26250 7.30426 7.49622 7.67477 7.85323 7.97238 8.14168 8.25617 8.53551 8.73315 9.05044 9.59701 11.05608 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.010303 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.795247 B = 2716.918095 C = 3954.683253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.078 0.922 4 C -0.109 4.109 5 C -0.111 4.111 6 C 0.047 3.953 7 N -0.486 5.486 8 C 0.248 3.752 9 H -0.005 1.005 10 C -0.531 4.531 11 H 0.056 0.944 12 C 0.091 3.909 13 N -0.820 5.820 14 Si 0.875 3.125 15 H -0.282 1.282 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.028 4.028 19 C -0.137 4.137 20 C -0.141 4.141 21 C -0.153 4.153 22 C -0.148 4.148 23 C -0.070 4.070 24 C 0.087 3.913 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.004 0.996 34 H 0.255 0.745 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.159 0.841 40 H -0.001 1.001 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 -3.152 5.570 6.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.096 0.904 4 C -0.147 4.147 5 C -0.149 4.149 6 C -0.082 4.082 7 N -0.209 5.209 8 C 0.142 3.858 9 H 0.012 0.988 10 C -0.568 4.568 11 H 0.074 0.926 12 C -0.118 4.118 13 N -0.452 5.452 14 Si 0.702 3.298 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.030 4.030 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.171 4.171 22 C -0.166 4.166 23 C -0.089 4.089 24 C -0.041 4.041 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.177 0.823 40 H 0.017 0.983 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.289 -2.480 5.690 6.213 hybrid contribution -0.251 -0.210 -1.117 1.164 sum -0.540 -2.690 4.573 5.333 Atomic orbital electron populations 1.21773 0.96505 1.00808 1.00898 1.21168 0.93625 1.00937 0.95048 0.90367 1.21591 0.96164 0.99464 0.97500 1.21518 0.95286 1.01403 0.96678 1.22156 1.00128 0.93644 0.92227 1.61962 1.05886 1.52379 1.00718 1.18209 0.87173 0.91913 0.88485 0.98761 1.20762 1.39391 0.92537 1.04143 0.92574 1.24855 0.94486 0.97473 0.94961 1.70094 1.40767 1.08934 1.25429 0.86891 0.77946 0.80044 0.84879 1.20793 1.21208 1.20062 1.20329 0.97312 0.92312 0.92999 1.20895 0.93638 0.99592 1.01392 1.20769 0.94447 0.99217 1.01492 1.20795 0.98214 0.96980 1.01116 1.21171 0.95455 0.98563 1.01411 1.21715 0.92363 0.97594 0.97202 1.21715 0.88893 0.96032 0.97446 0.93568 0.92837 0.93547 0.93272 0.93338 0.91290 0.93387 0.91302 0.97776 0.93520 0.87846 0.88069 0.88269 0.88021 0.82317 0.98274 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.20 37.16 0.34 -1.78 16 2 C -0.09 -1.57 2.88 -90.54 -0.26 -1.83 16 3 H 0.08 1.54 8.14 -51.92 -0.42 1.11 16 4 C -0.11 -1.75 5.29 -26.61 -0.14 -1.89 16 5 C -0.11 -1.89 6.09 -26.64 -0.16 -2.05 16 6 C 0.05 0.93 4.93 -3.83 -0.02 0.91 16 7 N -0.49 -10.71 2.43 -229.48 -0.56 -11.26 16 8 C 0.25 5.94 1.95 -70.01 -0.14 5.81 16 9 H -0.01 -0.13 8.07 -51.93 -0.42 -0.55 16 10 C -0.53 -13.75 7.23 -34.44 -0.25 -14.00 16 11 H 0.06 1.48 7.83 -52.49 -0.41 1.07 16 12 C 0.09 2.33 5.15 -17.82 -0.09 2.24 16 13 N -0.82 -21.06 9.35 55.43 0.52 -20.55 16 14 Si 0.87 20.46 29.55 -169.99 -5.02 15.44 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.03 -0.66 3.81 -104.63 -0.40 -1.05 16 19 C -0.14 -2.91 9.69 -39.58 -0.38 -3.29 16 20 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16 21 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 22 C -0.15 -3.00 10.05 -39.58 -0.40 -3.39 16 23 C -0.07 -1.59 6.41 -39.59 -0.25 -1.85 16 24 C 0.09 1.82 4.55 -3.83 -0.02 1.80 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.41 5.60 -51.93 -0.29 1.12 16 33 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 36 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.16 3.87 5.68 -52.49 -0.30 3.57 16 40 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 41 H 0.08 1.97 6.84 -51.93 -0.36 1.61 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -25.71 315.97 -10.09 -35.80 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.83 Total: 2.59 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -2.97 Total: -26.78 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: -0.04 Total: -31.81 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.71 -10.09 -35.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.562 kcal (2) G-P(sol) polarization free energy of solvation -25.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds