Wall clock time and date at job start Mon Mar 30 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09011 * 109.50278 * 2 1 4 4 C 1.53116 * 109.50463 * 120.07787 * 2 1 3 5 5 C 1.53125 * 109.16020 * 177.60010 * 4 2 1 6 6 C 1.53044 * 109.27491 * 302.34466 * 5 4 2 7 7 N 1.46847 * 109.52276 * 59.18203 * 6 5 4 8 8 C 1.46894 * 110.99785 * 174.15647 * 7 6 5 9 9 H 1.08996 * 109.47229 * 63.95578 * 8 7 6 10 10 C 1.50710 * 109.47094 * 183.95322 * 8 7 6 11 11 H 1.07993 * 119.99754 * 234.52051 * 10 8 7 12 12 C 1.37878 * 119.99712 * 54.51960 * 10 8 7 13 13 N 1.31518 * 120.00037 * 349.75123 * 12 10 8 14 14 Si 1.86800 * 119.99823 * 169.74615 * 12 10 8 15 15 H 1.48503 * 109.46769 * 89.99994 * 14 12 10 16 16 H 1.48493 * 109.47212 * 210.00200 * 14 12 10 17 17 H 1.48495 * 109.46949 * 330.00410 * 14 12 10 18 18 C 1.50702 * 109.47333 * 303.95187 * 8 7 6 19 19 C 1.38237 * 119.99796 * 148.14281 * 18 8 7 20 20 C 1.38230 * 119.99929 * 179.74616 * 19 18 8 21 21 C 1.38238 * 119.99921 * 0.55208 * 20 19 18 22 22 C 1.38238 * 119.99924 * 359.70234 * 21 20 19 23 23 C 1.38226 * 120.00074 * 328.41936 * 18 8 7 24 24 C 1.46848 * 111.23366 * 298.27345 * 7 6 5 25 25 H 1.08998 * 109.47300 * 299.99683 * 1 2 3 26 26 H 1.08994 * 109.47154 * 60.00138 * 1 2 3 27 27 H 1.08999 * 109.46547 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.52745 * 297.50299 * 4 2 1 29 29 H 1.09000 * 109.52129 * 57.63097 * 4 2 1 30 30 H 1.08994 * 109.50398 * 62.28738 * 5 4 2 31 31 H 1.08999 * 109.50093 * 182.41062 * 5 4 2 32 32 H 1.08998 * 109.45980 * 179.19370 * 6 5 4 33 33 H 1.08993 * 109.46257 * 299.16223 * 6 5 4 34 34 H 0.96999 * 119.99474 * 179.97438 * 13 12 10 35 35 H 1.08005 * 120.00156 * 359.97438 * 19 18 8 36 36 H 1.08008 * 120.00334 * 180.27155 * 20 19 18 37 37 H 1.07998 * 119.99980 * 179.72470 * 21 20 19 38 38 H 1.07995 * 119.99654 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.00175 * 0.02562 * 23 18 8 40 40 H 1.08999 * 109.42650 * 301.68965 * 24 7 6 41 41 H 1.08991 * 109.49882 * 181.71594 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0276 0.0000 4 6 2.0412 -0.7233 1.2490 5 6 3.5712 -0.7714 1.2110 6 6 4.0230 -1.4729 -0.0720 7 7 3.5093 -0.7424 -1.2377 8 6 4.0373 -1.3065 -2.4870 9 1 3.6794 -2.3293 -2.6036 10 6 3.5675 -0.4740 -3.6521 11 1 3.0467 -0.9415 -4.4746 12 6 3.8027 0.8845 -3.6680 13 7 4.2519 1.4868 -2.5885 14 14 3.4835 1.8696 -5.2227 15 1 2.0829 2.3633 -5.2169 16 1 4.4153 3.0245 -5.2770 17 1 3.6983 1.0039 -6.4100 18 6 5.5437 -1.3033 -2.4424 19 6 6.2564 -2.2937 -3.0921 20 6 7.6382 -2.2879 -3.0557 21 6 8.3071 -1.2982 -2.3600 22 6 7.5943 -0.3108 -1.7059 23 6 6.2125 -0.3134 -1.7471 24 6 2.0410 -0.7229 -1.2484 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.7157 -0.1863 2.1399 29 1 1.6444 -1.7383 1.2701 30 1 3.9678 0.2437 1.2297 31 1 3.9396 -1.3227 2.0762 32 1 5.1121 -1.4960 -0.1090 33 1 3.6376 -2.4923 -0.0835 34 1 4.4177 2.4424 -2.5999 35 1 5.7337 -3.0700 -3.6313 36 1 8.1952 -3.0592 -3.5670 37 1 9.3866 -1.2962 -2.3278 38 1 8.1169 0.4626 -1.1627 39 1 5.6556 0.4575 -1.2355 40 1 1.6649 -1.7459 -1.2551 41 1 1.6905 -0.2014 -2.1390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:41 Heat of formation + Delta-G solvation = 14.280293 kcal Electronic energy + Delta-G solvation = -20488.278225 eV Core-core repulsion = 17753.105888 eV Total energy + Delta-G solvation = -2735.172337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49537 -39.03472 -35.95806 -33.89228 -32.53664 -31.58977 -31.24228 -28.45843 -27.19668 -25.40729 -23.50648 -22.90160 -22.59024 -21.22851 -20.31064 -18.25254 -17.27542 -16.79643 -16.37253 -15.83386 -15.47689 -15.31081 -14.82154 -14.76016 -14.71394 -13.94365 -13.80945 -13.67619 -13.51672 -13.21139 -13.18534 -12.80995 -12.57502 -12.53951 -12.37188 -12.16102 -11.82539 -11.72931 -11.49031 -11.32546 -11.20858 -10.86032 -10.76137 -10.40734 -9.44724 -9.07627 -8.48022 -7.82389 -6.07362 0.82842 0.95571 1.40428 1.44848 1.51188 2.48391 3.19638 3.35886 3.60188 4.02727 4.15250 4.18918 4.34804 4.36891 4.40821 4.51407 4.62018 4.68757 4.75647 4.78591 4.87587 4.92265 4.98497 5.01999 5.11791 5.12417 5.19788 5.23268 5.29656 5.39791 5.43416 5.48117 5.60176 5.66728 5.71991 5.78269 5.88374 6.04058 6.21253 6.35807 6.55676 6.64932 6.99913 7.17864 7.58712 9.06237 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.010303 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.795247 B = 2716.918095 C = 3954.683253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.055 0.945 4 C -0.103 4.103 5 C -0.105 4.105 6 C 0.049 3.951 7 N -0.493 5.493 8 C 0.249 3.751 9 H -0.027 1.027 10 C -0.550 4.550 11 H 0.038 0.962 12 C 0.063 3.937 13 N -0.827 5.827 14 Si 0.921 3.079 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.282 1.282 18 C -0.050 4.050 19 C -0.154 4.154 20 C -0.136 4.136 21 C -0.146 4.146 22 C -0.153 4.153 23 C -0.085 4.085 24 C 0.090 3.910 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.001 0.999 34 H 0.252 0.748 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.122 0.878 39 H 0.137 0.863 40 H -0.005 1.005 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 -3.315 6.693 7.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.103 4.103 3 H 0.074 0.926 4 C -0.141 4.141 5 C -0.143 4.143 6 C -0.079 4.079 7 N -0.217 5.217 8 C 0.142 3.858 9 H -0.009 1.009 10 C -0.588 4.588 11 H 0.056 0.944 12 C -0.145 4.145 13 N -0.459 5.459 14 Si 0.749 3.251 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.207 1.207 18 C -0.051 4.051 19 C -0.173 4.173 20 C -0.154 4.154 21 C -0.164 4.164 22 C -0.171 4.171 23 C -0.103 4.103 24 C -0.038 4.038 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.019 0.981 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.140 0.860 39 H 0.154 0.846 40 H 0.013 0.987 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.692 -2.643 6.822 7.348 hybrid contribution -0.501 -0.221 -1.477 1.576 sum 0.191 -2.864 5.344 6.066 Atomic orbital electron populations 1.21713 0.94158 1.01698 1.01737 1.21100 0.95581 0.99249 0.94390 0.92631 1.21556 0.95116 1.00030 0.97364 1.21487 0.96262 1.00611 0.95963 1.22163 0.99472 0.93597 0.92664 1.61882 1.06413 1.52644 1.00726 1.18117 0.88377 0.90337 0.88965 1.00924 1.20843 1.40114 0.93295 1.04552 0.94372 1.25243 0.94579 0.97878 0.96806 1.70206 1.40949 1.08709 1.26027 0.86165 0.77839 0.78801 0.82327 1.20475 1.21010 1.20695 1.20295 0.96657 0.93649 0.94535 1.21098 0.95043 0.99515 1.01624 1.21151 0.93549 0.99905 1.00810 1.21210 1.00119 0.95644 0.99382 1.21435 0.94554 0.99572 1.01536 1.21510 0.93543 0.97308 0.97941 1.21678 0.88478 0.95726 0.97928 0.91132 0.93627 0.92602 0.90566 0.92467 0.92568 0.90637 0.92354 0.98093 0.93781 0.87634 0.84662 0.84479 0.85959 0.84570 0.98653 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.20 71.98 0.66 -3.20 16 2 C -0.08 -2.96 2.88 -10.74 -0.03 -2.99 16 3 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 4 C -0.10 -3.09 5.29 30.67 0.16 -2.93 16 5 C -0.11 -3.47 6.09 30.65 0.19 -3.28 16 6 C 0.05 1.97 4.93 86.33 0.43 2.40 16 7 N -0.49 -22.52 2.43 -879.93 -2.14 -24.65 16 8 C 0.25 12.46 1.95 43.43 0.08 12.55 16 9 H -0.03 -1.39 8.07 -2.39 -0.02 -1.41 16 10 C -0.55 -29.84 7.23 25.60 0.19 -29.65 16 11 H 0.04 2.13 7.83 -2.91 -0.02 2.11 16 12 C 0.06 3.30 5.15 84.65 0.44 3.74 16 13 N -0.83 -43.57 9.35 21.45 0.20 -43.37 16 14 Si 0.92 42.89 29.55 68.60 2.03 44.92 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 18 C -0.05 -2.37 3.81 -19.87 -0.08 -2.45 16 19 C -0.15 -6.54 9.69 22.27 0.22 -6.33 16 20 C -0.14 -4.89 10.05 22.27 0.22 -4.67 16 21 C -0.15 -5.04 10.05 22.27 0.22 -4.82 16 22 C -0.15 -5.95 10.05 22.27 0.22 -5.73 16 23 C -0.08 -3.85 6.41 22.27 0.14 -3.71 16 24 C 0.09 3.89 4.55 86.33 0.39 4.28 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.06 2.44 5.60 -2.39 -0.01 2.42 16 33 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.25 12.98 8.31 -92.71 -0.77 12.21 16 35 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 36 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 37 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 38 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.14 6.81 5.68 -2.91 -0.02 6.79 16 40 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.05 2.54 6.84 -2.39 -0.02 2.52 16 Total: -1.00 -56.77 315.97 4.52 -52.25 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.97 Total: 17.64 kcal Atomic # 6 Polarization: -50.24 SS G_CDS: 3.46 Total: -46.78 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -1.94 Total: -68.03 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -56.77 4.52 -52.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.527 kcal (2) G-P(sol) polarization free energy of solvation -56.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds