Wall clock time and date at job start Mon Mar 30 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46920 * 2 1 4 4 C 1.52995 * 109.47398 * 120.00559 * 2 1 3 5 5 C 1.53004 * 117.49356 * 8.61922 * 4 2 1 6 6 C 1.52998 * 60.00059 * 252.51249 * 5 4 2 7 7 N 1.46902 * 109.47109 * 240.00428 * 2 1 3 8 8 C 1.46902 * 111.00014 * 306.04797 * 7 2 1 9 9 C 1.46905 * 111.00060 * 70.00227 * 7 2 1 10 10 H 1.09007 * 109.46941 * 299.99714 * 9 7 2 11 11 C 1.50692 * 109.47342 * 59.99741 * 9 7 2 12 12 H 1.07999 * 120.00152 * 54.48719 * 11 9 7 13 13 C 1.37879 * 120.00084 * 234.48829 * 11 9 7 14 14 N 1.31515 * 119.99810 * 181.93236 * 13 11 9 15 15 Si 1.86795 * 120.00032 * 1.93870 * 13 11 9 16 16 H 1.48498 * 109.47497 * 86.19106 * 15 13 11 17 17 H 1.48506 * 109.47188 * 206.19242 * 15 13 11 18 18 H 1.48498 * 109.47035 * 326.18680 * 15 13 11 19 19 C 1.50700 * 109.47376 * 180.02562 * 9 7 2 20 20 C 1.38238 * 119.99415 * 312.56248 * 19 9 7 21 21 C 1.38244 * 119.99608 * 179.80819 * 20 19 9 22 22 C 1.38232 * 119.99632 * 0.40344 * 21 20 19 23 23 C 1.38228 * 120.00544 * 359.84910 * 22 21 20 24 24 C 1.38231 * 120.00381 * 132.83936 * 19 9 7 25 25 H 1.08997 * 109.47088 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47365 * 299.99716 * 1 2 3 27 27 H 1.09007 * 109.47211 * 59.99876 * 1 2 3 28 28 H 1.08994 * 115.55501 * 154.32807 * 4 2 1 29 29 H 1.08998 * 117.50188 * 0.02562 * 5 4 2 30 30 H 1.09008 * 117.49481 * 145.02414 * 5 4 2 31 31 H 1.09003 * 117.50235 * 252.51322 * 6 5 4 32 32 H 1.09001 * 117.51787 * 107.48252 * 6 5 4 33 33 H 1.09005 * 109.46932 * 183.95566 * 8 7 2 34 34 H 1.08990 * 109.46932 * 63.95607 * 8 7 2 35 35 H 1.08991 * 109.46909 * 303.94876 * 8 7 2 36 36 H 0.97006 * 119.99850 * 180.02562 * 14 13 11 37 37 H 1.07994 * 120.00192 * 0.02562 * 20 19 9 38 38 H 1.07996 * 119.99696 * 180.23296 * 21 20 19 39 39 H 1.08007 * 119.99894 * 179.83530 * 22 21 20 40 40 H 1.08003 * 120.00410 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.99863 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.0104 -1.4542 2.1115 6 6 1.6357 -0.1497 2.6095 7 7 2.0196 -0.6924 -1.1995 8 6 1.4342 -2.0354 -1.3080 9 6 1.7529 0.0974 -2.4091 10 1 0.6791 0.2553 -2.5105 11 6 2.4486 1.4299 -2.3025 12 1 3.5098 1.4709 -2.1063 13 6 1.7303 2.5968 -2.4554 14 7 2.3440 3.7587 -2.4003 15 14 -0.1144 2.5275 -2.7408 16 1 -0.8156 2.4645 -1.4333 17 1 -0.5475 3.7425 -3.4768 18 1 -0.4467 1.3204 -3.5394 19 6 2.2675 -0.6433 -3.6164 20 6 3.5386 -1.1866 -3.6040 21 6 4.0091 -1.8695 -4.7100 22 6 3.2117 -2.0019 -5.8313 23 6 1.9427 -1.4541 -5.8457 24 6 1.4706 -0.7746 -4.7383 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.0323 -1.1642 1.1641 29 1 -0.0303 -1.4228 1.7887 30 1 1.3253 -2.3796 2.5939 31 1 2.3620 -0.2168 3.4196 32 1 1.0067 0.7405 2.6146 33 1 1.8664 -2.5519 -2.1651 34 1 0.3556 -1.9519 -1.4401 35 1 1.6466 -2.5987 -0.3994 36 1 1.8386 4.5797 -2.5075 37 1 4.1626 -1.0805 -2.7290 38 1 5.0007 -2.2972 -4.6989 39 1 3.5803 -2.5332 -6.6964 40 1 1.3198 -1.5572 -6.7219 41 1 0.4791 -0.3466 -4.7494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:20 Heat of formation + Delta-G solvation = 61.080620 kcal Electronic energy + Delta-G solvation = -20203.919685 eV Core-core repulsion = 17470.776763 eV Total energy + Delta-G solvation = -2733.142922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.19344 -38.04976 -35.53230 -32.60354 -31.09124 -30.17622 -28.72631 -27.60704 -25.19375 -23.52364 -22.14817 -22.01525 -21.77952 -19.61488 -18.18111 -16.96656 -16.26229 -15.75903 -15.17965 -14.63582 -14.46686 -13.94258 -13.84247 -13.32009 -12.87374 -12.76792 -12.74152 -12.50556 -12.05408 -11.75422 -11.45758 -11.41062 -11.14389 -11.01281 -10.81024 -10.76795 -10.46617 -10.17923 -9.98431 -9.89735 -9.79590 -9.45295 -9.33710 -8.65930 -8.20092 -7.82073 -7.25710 -6.20655 -4.18519 2.11611 2.16737 3.15361 3.22651 3.26218 4.18163 4.26866 4.50375 4.81432 5.13354 5.23456 5.33448 5.48595 5.53928 5.59255 5.67468 5.75015 5.83778 5.88622 5.93965 6.01066 6.09002 6.12401 6.17993 6.28060 6.31073 6.35031 6.41198 6.51722 6.54939 6.57504 6.74407 6.76803 6.88940 7.02801 7.16319 7.24551 7.42660 7.53511 7.78159 8.05289 8.13841 8.54974 8.92098 9.41367 10.91566 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.009426 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.247578 B = 2969.837594 C = 4024.216336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.118 3.882 3 H 0.108 0.892 4 C -0.125 4.125 5 C -0.196 4.196 6 C -0.182 4.182 7 N -0.522 5.522 8 C 0.019 3.981 9 C 0.207 3.793 10 H 0.020 0.980 11 C -0.488 4.488 12 H 0.084 0.916 13 C 0.078 3.922 14 N -0.887 5.887 15 Si 0.862 3.138 16 H -0.269 1.269 17 H -0.288 1.288 18 H -0.264 1.264 19 C -0.028 4.028 20 C -0.094 4.094 21 C -0.129 4.129 22 C -0.148 4.148 23 C -0.125 4.125 24 C -0.136 4.136 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.013 0.987 35 H 0.057 0.943 36 H 0.266 0.734 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 -10.262 2.316 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.009 3.991 3 H 0.126 0.874 4 C -0.144 4.144 5 C -0.233 4.233 6 C -0.220 4.220 7 N -0.245 5.245 8 C -0.130 4.130 9 C 0.101 3.899 10 H 0.038 0.962 11 C -0.526 4.526 12 H 0.102 0.898 13 C -0.126 4.126 14 N -0.524 5.524 15 Si 0.690 3.310 16 H -0.195 1.195 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.029 4.029 20 C -0.112 4.112 21 C -0.148 4.148 22 C -0.166 4.166 23 C -0.144 4.144 24 C -0.155 4.155 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.135 -10.093 2.342 10.579 hybrid contribution -1.946 0.262 -0.359 1.996 sum -4.081 -9.831 1.983 10.827 Atomic orbital electron populations 1.22656 0.99433 1.00968 1.01664 1.21033 0.90757 0.99628 0.87656 0.87399 1.22359 0.99032 1.02029 0.90937 1.23114 0.99317 0.95525 1.05298 1.22899 1.03870 0.97242 0.97978 1.62401 1.57599 1.01525 1.02968 1.22391 0.96519 0.92917 1.01169 1.18893 0.94745 0.92175 0.84097 0.96198 1.20789 0.97414 0.86549 1.47878 0.89790 1.25040 0.97657 0.95483 0.94421 1.69870 1.35978 0.97508 1.49012 0.87170 0.87074 0.77612 0.79096 1.19511 1.21460 1.18951 1.20319 0.93866 0.92472 0.96235 1.20986 0.95667 0.96659 0.97894 1.21075 0.99099 1.00516 0.94070 1.20857 0.95037 1.02587 0.98167 1.20913 0.96153 0.99475 0.97820 1.21030 0.99913 1.00454 0.94064 0.92715 0.92959 0.92741 0.87508 0.88759 0.89792 0.89384 0.89109 0.92257 0.96836 0.92469 0.92385 0.85720 0.87219 0.87455 0.87375 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 7.04 37.16 0.26 -3.15 16 2 C 0.12 2.25 2.55 -67.72 -0.17 2.08 16 3 H 0.11 2.44 6.77 -51.93 -0.35 2.09 16 4 C -0.12 -2.00 4.77 -90.62 -0.43 -2.43 16 5 C -0.20 -2.65 9.42 -26.73 -0.25 -2.91 16 6 C -0.18 -2.56 9.90 -26.73 -0.26 -2.83 16 7 N -0.52 -10.42 4.14 -229.70 -0.95 -11.37 16 8 C 0.02 0.33 8.33 60.07 0.50 0.83 16 9 C 0.21 4.67 1.42 -70.02 -0.10 4.57 16 10 H 0.02 0.48 3.15 -51.92 -0.16 0.31 16 11 C -0.49 -12.91 7.40 -34.44 -0.25 -13.17 16 12 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 13 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 15 Si 0.86 20.66 25.35 -169.99 -4.31 16.35 16 16 H -0.27 -6.22 6.58 56.52 0.37 -5.85 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.26 -6.10 5.92 56.52 0.33 -5.77 16 19 C -0.03 -0.59 3.54 -104.62 -0.37 -0.96 16 20 C -0.09 -1.85 8.48 -39.58 -0.34 -2.19 16 21 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 22 C -0.15 -2.43 10.05 -39.59 -0.40 -2.83 16 23 C -0.13 -2.18 10.05 -39.59 -0.40 -2.58 16 24 C -0.14 -2.73 9.67 -39.58 -0.38 -3.11 16 25 H 0.05 0.89 5.25 -51.93 -0.27 0.62 16 26 H 0.05 0.87 7.07 -51.93 -0.37 0.50 16 27 H 0.05 1.10 3.98 -51.93 -0.21 0.89 16 28 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.09 1.28 5.85 -51.93 -0.30 0.98 16 30 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.30 7.61 -51.93 -0.40 0.91 16 33 H 0.06 1.04 6.44 -51.93 -0.33 0.71 16 34 H 0.01 0.23 6.46 -51.93 -0.34 -0.10 16 35 H 0.06 0.90 7.04 -51.93 -0.37 0.53 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.12 2.50 7.95 -52.49 -0.42 2.09 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.11 2.17 7.45 -52.49 -0.39 1.78 16 LS Contribution 311.14 15.07 4.69 4.69 Total: -1.00 -27.64 311.14 -8.98 -36.62 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.10 Total: 8.13 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: -3.09 Total: -29.28 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.18 Total: -36.51 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.31 Total: 16.35 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.64 -8.98 -36.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.703 kcal (2) G-P(sol) polarization free energy of solvation -27.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds