Wall clock time and date at job start Mon Mar 30 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46920 * 2 1 4 4 C 1.52995 * 109.47398 * 120.00559 * 2 1 3 5 5 C 1.53004 * 117.49356 * 8.61922 * 4 2 1 6 6 C 1.52998 * 60.00059 * 252.51249 * 5 4 2 7 7 N 1.46902 * 109.47109 * 240.00428 * 2 1 3 8 8 C 1.46902 * 111.00014 * 306.04797 * 7 2 1 9 9 C 1.46905 * 111.00060 * 70.00227 * 7 2 1 10 10 H 1.09007 * 109.46941 * 299.99714 * 9 7 2 11 11 C 1.50692 * 109.47342 * 59.99741 * 9 7 2 12 12 H 1.07999 * 120.00152 * 54.48719 * 11 9 7 13 13 C 1.37879 * 120.00084 * 234.48829 * 11 9 7 14 14 N 1.31515 * 119.99810 * 181.93236 * 13 11 9 15 15 Si 1.86795 * 120.00032 * 1.93870 * 13 11 9 16 16 H 1.48498 * 109.47497 * 86.19106 * 15 13 11 17 17 H 1.48506 * 109.47188 * 206.19242 * 15 13 11 18 18 H 1.48498 * 109.47035 * 326.18680 * 15 13 11 19 19 C 1.50700 * 109.47376 * 180.02562 * 9 7 2 20 20 C 1.38238 * 119.99415 * 312.56248 * 19 9 7 21 21 C 1.38244 * 119.99608 * 179.80819 * 20 19 9 22 22 C 1.38232 * 119.99632 * 0.40344 * 21 20 19 23 23 C 1.38228 * 120.00544 * 359.84910 * 22 21 20 24 24 C 1.38231 * 120.00381 * 132.83936 * 19 9 7 25 25 H 1.08997 * 109.47088 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47365 * 299.99716 * 1 2 3 27 27 H 1.09007 * 109.47211 * 59.99876 * 1 2 3 28 28 H 1.08994 * 115.55501 * 154.32807 * 4 2 1 29 29 H 1.08998 * 117.50188 * 0.02562 * 5 4 2 30 30 H 1.09008 * 117.49481 * 145.02414 * 5 4 2 31 31 H 1.09003 * 117.50235 * 252.51322 * 6 5 4 32 32 H 1.09001 * 117.51787 * 107.48252 * 6 5 4 33 33 H 1.09005 * 109.46932 * 183.95566 * 8 7 2 34 34 H 1.08990 * 109.46932 * 63.95607 * 8 7 2 35 35 H 1.08991 * 109.46909 * 303.94876 * 8 7 2 36 36 H 0.97006 * 119.99850 * 180.02562 * 14 13 11 37 37 H 1.07994 * 120.00192 * 0.02562 * 20 19 9 38 38 H 1.07996 * 119.99696 * 180.23296 * 21 20 19 39 39 H 1.08007 * 119.99894 * 179.83530 * 22 21 20 40 40 H 1.08003 * 120.00410 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.99863 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.0104 -1.4542 2.1115 6 6 1.6357 -0.1497 2.6095 7 7 2.0196 -0.6924 -1.1995 8 6 1.4342 -2.0354 -1.3080 9 6 1.7529 0.0974 -2.4091 10 1 0.6791 0.2553 -2.5105 11 6 2.4486 1.4299 -2.3025 12 1 3.5098 1.4709 -2.1063 13 6 1.7303 2.5968 -2.4554 14 7 2.3440 3.7587 -2.4003 15 14 -0.1144 2.5275 -2.7408 16 1 -0.8156 2.4645 -1.4333 17 1 -0.5475 3.7425 -3.4768 18 1 -0.4467 1.3204 -3.5394 19 6 2.2675 -0.6433 -3.6164 20 6 3.5386 -1.1866 -3.6040 21 6 4.0091 -1.8695 -4.7100 22 6 3.2117 -2.0019 -5.8313 23 6 1.9427 -1.4541 -5.8457 24 6 1.4706 -0.7746 -4.7383 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.0323 -1.1642 1.1641 29 1 -0.0303 -1.4228 1.7887 30 1 1.3253 -2.3796 2.5939 31 1 2.3620 -0.2168 3.4196 32 1 1.0067 0.7405 2.6146 33 1 1.8664 -2.5519 -2.1651 34 1 0.3556 -1.9519 -1.4401 35 1 1.6466 -2.5987 -0.3994 36 1 1.8386 4.5797 -2.5075 37 1 4.1626 -1.0805 -2.7290 38 1 5.0007 -2.2972 -4.6989 39 1 3.5803 -2.5332 -6.6964 40 1 1.3198 -1.5572 -6.7219 41 1 0.4791 -0.3466 -4.7494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:19 Heat of formation + Delta-G solvation = 45.622737 kcal Electronic energy + Delta-G solvation = -20204.589989 eV Core-core repulsion = 17470.776763 eV Total energy + Delta-G solvation = -2733.813226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69802 -39.42162 -36.96326 -34.59542 -32.64495 -31.61208 -30.21625 -29.34775 -26.66384 -25.28285 -23.57842 -23.22665 -23.13671 -21.16314 -19.70948 -18.95355 -17.72516 -17.14822 -16.70672 -16.33499 -15.94106 -15.38310 -15.28285 -14.84959 -14.71329 -14.33309 -14.28030 -14.02236 -13.48992 -13.27413 -13.03320 -12.83990 -12.68195 -12.47117 -12.28765 -12.16015 -12.02902 -11.80381 -11.60455 -11.51168 -11.43484 -11.01293 -10.79185 -10.57884 -9.64160 -9.33492 -8.85166 -8.33392 -6.33691 0.66129 0.72080 1.22807 1.24580 1.32214 2.24639 2.86357 3.03451 3.18567 3.38729 3.95723 4.12024 4.16549 4.22063 4.27405 4.33495 4.38141 4.42499 4.44113 4.48616 4.62029 4.69273 4.79255 4.84472 4.86157 4.94164 4.96377 5.02556 5.13143 5.17328 5.29323 5.33637 5.37544 5.42318 5.48037 5.51888 5.74156 5.78585 6.00918 6.15126 6.32364 6.51564 6.69479 6.79270 7.30041 8.83245 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.009426 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.247578 B = 2969.837594 C = 4024.216336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.119 3.881 3 H 0.059 0.941 4 C -0.147 4.147 5 C -0.170 4.170 6 C -0.179 4.179 7 N -0.530 5.530 8 C 0.027 3.973 9 C 0.216 3.784 10 H 0.012 0.988 11 C -0.478 4.478 12 H 0.036 0.964 13 C 0.026 3.974 14 N -0.939 5.939 15 Si 0.916 3.084 16 H -0.257 1.257 17 H -0.291 1.291 18 H -0.250 1.250 19 C -0.057 4.057 20 C -0.110 4.110 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.122 4.122 24 C -0.156 4.156 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.030 0.970 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.016 0.984 35 H 0.078 0.922 36 H 0.265 0.735 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 -13.264 1.834 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.011 3.989 3 H 0.077 0.923 4 C -0.165 4.165 5 C -0.207 4.207 6 C -0.216 4.216 7 N -0.253 5.253 8 C -0.121 4.121 9 C 0.109 3.891 10 H 0.029 0.971 11 C -0.517 4.517 12 H 0.054 0.946 13 C -0.172 4.172 14 N -0.579 5.579 15 Si 0.742 3.258 16 H -0.182 1.182 17 H -0.218 1.218 18 H -0.174 1.174 19 C -0.058 4.058 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.156 4.156 23 C -0.140 4.140 24 C -0.174 4.174 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.249 -13.129 1.871 13.653 hybrid contribution -1.463 1.096 -0.225 1.842 sum -4.713 -12.032 1.646 13.027 Atomic orbital electron populations 1.22606 0.98355 1.02150 1.01088 1.20891 0.91614 0.97541 0.88871 0.92256 1.22153 0.99767 1.04115 0.90486 1.23176 0.98553 0.96010 1.02918 1.22987 1.04058 0.97629 0.96941 1.62247 1.58378 1.02461 1.02218 1.22362 0.96372 0.91245 1.02151 1.18649 0.93532 0.90885 0.86014 0.97082 1.20842 0.95319 0.89005 1.46496 0.94560 1.25708 1.01913 0.94997 0.94626 1.70014 1.37729 0.98250 1.51898 0.86294 0.82082 0.77774 0.79673 1.18187 1.21763 1.17447 1.20256 0.95018 0.94354 0.96132 1.20962 0.95178 0.97993 0.98761 1.21414 1.00485 0.99244 0.93265 1.21330 0.94191 1.01239 0.98821 1.21289 0.96990 0.97972 0.97746 1.21146 0.99846 1.01666 0.94772 0.90523 0.91698 0.95106 0.88040 0.88367 0.87465 0.87629 0.89700 0.92466 0.96551 0.90358 0.92529 0.87330 0.84295 0.83421 0.84167 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.48 7.04 71.98 0.51 -5.98 16 2 C 0.12 4.65 2.55 44.91 0.11 4.77 16 3 H 0.06 2.86 6.77 -2.39 -0.02 2.85 16 4 C -0.15 -4.58 4.77 -10.79 -0.05 -4.63 16 5 C -0.17 -4.09 9.42 30.60 0.29 -3.81 16 6 C -0.18 -4.73 9.90 30.59 0.30 -4.43 16 7 N -0.53 -21.56 4.14 -880.63 -3.64 -25.20 16 8 C 0.03 0.90 8.33 127.69 1.06 1.97 16 9 C 0.22 10.03 1.42 43.42 0.06 10.10 16 10 H 0.01 0.55 3.15 -2.38 -0.01 0.55 16 11 C -0.48 -26.86 7.40 25.60 0.19 -26.67 16 12 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 13 C 0.03 1.50 5.47 84.66 0.46 1.97 16 14 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 15 Si 0.92 43.95 25.35 68.60 1.74 45.69 16 16 H -0.26 -11.66 6.58 99.48 0.65 -11.01 16 17 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 18 H -0.25 -11.30 5.92 99.48 0.59 -10.71 16 19 C -0.06 -2.43 3.54 -19.87 -0.07 -2.50 16 20 C -0.11 -4.37 8.48 22.27 0.19 -4.18 16 21 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 22 C -0.14 -3.98 10.05 22.27 0.22 -3.76 16 23 C -0.12 -3.86 10.05 22.27 0.22 -3.64 16 24 C -0.16 -6.09 9.67 22.27 0.22 -5.88 16 25 H 0.08 2.34 5.25 -2.39 -0.01 2.32 16 26 H 0.06 2.09 7.07 -2.39 -0.02 2.07 16 27 H 0.03 1.22 3.98 -2.38 -0.01 1.21 16 28 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 29 H 0.10 2.32 5.85 -2.39 -0.01 2.31 16 30 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.08 2.35 7.61 -2.39 -0.02 2.33 16 33 H 0.06 1.95 6.44 -2.38 -0.02 1.94 16 34 H 0.02 0.54 6.46 -2.39 -0.02 0.52 16 35 H 0.08 2.29 7.04 -2.39 -0.02 2.27 16 36 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 37 H 0.11 4.54 7.95 -2.91 -0.02 4.51 16 38 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 39 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 40 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 41 H 0.10 4.03 7.45 -2.91 -0.02 4.01 16 Total: -1.00 -64.15 311.14 3.18 -60.97 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.84 Total: 26.83 kcal Atomic # 6 Polarization: -54.43 SS G_CDS: 3.94 Total: -50.49 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -3.34 Total: -83.00 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.74 Total: 45.69 kcal Total: -64.15 3.18 -60.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.591 kcal (2) G-P(sol) polarization free energy of solvation -64.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds