Wall clock time and date at job start Mon Mar 30 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47350 * 2 1 4 4 C 1.52999 * 109.46888 * 240.00011 * 2 1 3 5 5 C 1.53000 * 117.50047 * 128.74880 * 4 2 1 6 6 C 1.53001 * 117.49890 * 60.08823 * 4 2 1 7 7 N 1.46903 * 109.47167 * 120.00028 * 2 1 3 8 8 C 1.46900 * 110.99815 * 53.47071 * 7 2 1 9 9 C 1.46902 * 111.00017 * 289.51466 * 7 2 1 10 10 H 1.08993 * 109.46971 * 57.00730 * 9 7 2 11 11 C 1.50698 * 109.46697 * 177.00483 * 9 7 2 12 12 H 1.07998 * 120.00447 * 35.22124 * 11 9 7 13 13 C 1.37878 * 119.99803 * 215.21432 * 11 9 7 14 14 N 1.31513 * 119.99926 * 5.52338 * 13 11 9 15 15 Si 1.86801 * 120.00255 * 185.52234 * 13 11 9 16 16 H 1.48502 * 109.47233 * 89.99829 * 15 13 11 17 17 H 1.48495 * 109.47239 * 210.00002 * 15 13 11 18 18 H 1.48503 * 109.46871 * 330.00452 * 15 13 11 19 19 C 1.50698 * 109.46840 * 297.00368 * 9 7 2 20 20 C 1.38237 * 119.99458 * 134.29316 * 19 9 7 21 21 C 1.38237 * 119.99869 * 179.97438 * 20 19 9 22 22 C 1.38237 * 120.00002 * 359.96145 * 21 20 19 23 23 C 1.38237 * 120.00026 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00371 * 314.26950 * 19 9 7 25 25 H 1.08995 * 109.47558 * 179.87465 * 1 2 3 26 26 H 1.09005 * 109.46730 * 299.87370 * 1 2 3 27 27 H 1.08999 * 109.47325 * 59.87043 * 1 2 3 28 28 H 1.08999 * 115.55057 * 274.41677 * 4 2 1 29 29 H 1.09004 * 117.49610 * 359.97438 * 5 4 2 30 30 H 1.08998 * 117.50327 * 145.02092 * 5 4 2 31 31 H 1.09001 * 117.49829 * 214.97614 * 6 4 2 32 32 H 1.08991 * 117.49950 * 359.97438 * 6 4 2 33 33 H 1.09001 * 109.46891 * 289.45189 * 8 7 2 34 34 H 1.08997 * 109.47372 * 49.45919 * 8 7 2 35 35 H 1.09005 * 109.46979 * 169.45759 * 8 7 2 36 36 H 0.97003 * 120.00157 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.00599 * 359.97438 * 20 19 9 38 38 H 1.07999 * 120.00393 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.00095 * 179.72088 * 22 21 20 40 40 H 1.07997 * 119.99991 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.00127 * 0.02562 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.0762 0.0039 -2.1101 6 6 1.6373 -0.1483 -2.6096 7 7 2.0196 -0.6925 1.1994 8 6 1.4255 -2.0311 1.3139 9 6 1.7632 0.1024 2.4079 10 1 0.6966 0.3131 2.4846 11 6 2.2113 -0.6701 3.6217 12 1 3.0842 -1.3036 3.5668 13 6 1.5068 -0.5681 4.8025 14 7 0.3841 0.1157 4.8414 15 14 2.1469 -1.4012 6.3471 16 1 3.0330 -0.4645 7.0838 17 1 1.0031 -1.7849 7.2128 18 1 2.9137 -2.6165 5.9724 19 6 2.5269 1.3991 2.3275 20 6 1.9030 2.5897 2.6501 21 6 2.6036 3.7791 2.5770 22 6 3.9284 3.7778 2.1820 23 6 4.5526 2.5870 1.8607 24 6 3.8514 1.3978 1.9318 25 1 -0.3634 -1.0276 -0.0022 26 1 -0.3633 0.5119 0.8912 27 1 -0.3634 0.5158 -0.8888 28 1 2.1252 -1.8046 -1.1647 29 1 3.3944 0.9950 -1.7867 30 1 3.8430 -0.6024 -2.5923 31 1 1.4581 -0.8547 -3.4202 32 1 1.0088 0.7422 -2.6146 33 1 0.3691 -1.9393 1.5663 34 1 1.5279 -2.5565 0.3644 35 1 1.9386 -2.5907 2.0960 36 1 -0.1118 0.1872 5.6721 37 1 0.8682 2.5908 2.9593 38 1 2.1162 4.7094 2.8286 39 1 4.4744 4.7075 2.1205 40 1 5.5875 2.5860 1.5517 41 1 4.3388 0.4676 1.6797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:22 Heat of formation + Delta-G solvation = 53.200652 kcal Electronic energy + Delta-G solvation = -20160.268101 eV Core-core repulsion = 17426.783477 eV Total energy + Delta-G solvation = -2733.484623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.96171 -37.68850 -35.52047 -32.73566 -30.67485 -29.95230 -29.16862 -26.45708 -25.22089 -23.65442 -21.97537 -21.87067 -21.44218 -19.86916 -18.52539 -16.62989 -15.82730 -15.57917 -14.96473 -14.48506 -14.16242 -13.90495 -13.64298 -13.38337 -12.85734 -12.54696 -12.36240 -12.09926 -11.76013 -11.56296 -11.54647 -11.23204 -11.15600 -11.01234 -10.90969 -10.50611 -10.29102 -10.16191 -10.05112 -9.90820 -9.74476 -9.46799 -9.30871 -8.58984 -7.99648 -7.62305 -7.08179 -6.12087 -4.14617 2.33934 2.37231 3.27173 3.33892 3.36769 4.13173 4.34891 4.71599 4.94493 5.16258 5.24320 5.29971 5.48726 5.69573 5.75728 5.81302 5.85679 5.87964 5.90071 6.00228 6.10077 6.17806 6.30647 6.35785 6.39835 6.47469 6.51069 6.57353 6.62246 6.66995 6.83692 6.94759 6.98168 7.08495 7.35255 7.37725 7.49591 7.76700 7.81234 7.86479 8.09214 8.23824 8.58219 8.98199 9.48945 10.94246 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.008802 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.124101 B = 3180.300092 C = 4214.650526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.108 3.892 3 H 0.075 0.925 4 C -0.129 4.129 5 C -0.176 4.176 6 C -0.188 4.188 7 N -0.529 5.529 8 C 0.045 3.955 9 C 0.229 3.771 10 H 0.048 0.952 11 C -0.497 4.497 12 H 0.064 0.936 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.272 1.272 19 C -0.022 4.022 20 C -0.119 4.119 21 C -0.132 4.132 22 C -0.154 4.154 23 C -0.136 4.136 24 C -0.100 4.100 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.019 0.981 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.263 0.737 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 1.638 -9.456 9.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.001 4.001 3 H 0.093 0.907 4 C -0.147 4.147 5 C -0.213 4.213 6 C -0.226 4.226 7 N -0.253 5.253 8 C -0.103 4.103 9 C 0.124 3.876 10 H 0.066 0.934 11 C -0.535 4.535 12 H 0.082 0.918 13 C -0.137 4.137 14 N -0.524 5.524 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.023 4.023 20 C -0.138 4.138 21 C -0.150 4.150 22 C -0.172 4.172 23 C -0.154 4.154 24 C -0.119 4.119 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.541 1.618 -9.354 9.827 hybrid contribution -0.550 -0.162 1.135 1.271 sum 1.991 1.457 -8.219 8.582 Atomic orbital electron populations 1.22392 0.98263 1.01760 1.01389 1.21187 0.91837 0.97448 0.89614 0.90734 1.22342 1.02355 0.99278 0.90757 1.22915 0.91894 1.02170 1.04341 1.22916 0.98543 1.03246 0.97877 1.62284 1.57691 1.02958 1.02345 1.22071 0.97394 0.91247 0.99566 1.18550 0.95416 0.86982 0.86671 0.93414 1.20934 1.12284 1.26349 0.93910 0.91821 1.24976 0.94371 0.95165 0.99154 1.69902 1.14237 1.41179 1.27075 0.86548 0.78484 0.79836 0.82918 1.20557 1.21291 1.19701 1.20504 0.94352 0.95420 0.92037 1.21084 1.00202 0.92038 1.00460 1.20948 0.94776 0.97556 1.01713 1.20800 0.95287 0.97242 1.03856 1.21010 0.98929 0.93275 1.02230 1.20976 0.94498 0.97113 0.99293 0.92688 0.92096 0.93470 0.87909 0.89021 0.89530 0.89526 0.89245 0.96217 0.94076 0.91116 0.92741 0.86675 0.87723 0.87888 0.87716 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 8.29 37.16 0.31 -2.80 16 2 C 0.11 1.94 2.36 -67.71 -0.16 1.78 16 3 H 0.07 1.44 6.50 -51.93 -0.34 1.10 16 4 C -0.13 -1.97 5.10 -90.62 -0.46 -2.43 16 5 C -0.18 -2.42 10.18 -26.69 -0.27 -2.69 16 6 C -0.19 -2.44 9.74 -26.69 -0.26 -2.70 16 7 N -0.53 -10.84 4.04 -229.70 -0.93 -11.76 16 8 C 0.05 0.89 8.03 60.06 0.48 1.38 16 9 C 0.23 5.41 1.67 -70.02 -0.12 5.29 16 10 H 0.05 1.26 5.42 -51.93 -0.28 0.98 16 11 C -0.50 -12.93 6.85 -34.44 -0.24 -13.16 16 12 H 0.06 1.69 7.71 -52.49 -0.40 1.29 16 13 C 0.07 1.77 5.45 -17.82 -0.10 1.68 16 14 N -0.89 -24.39 12.76 55.43 0.71 -23.68 16 15 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 C -0.02 -0.49 3.49 -104.63 -0.36 -0.86 16 20 C -0.12 -2.59 9.67 -39.58 -0.38 -2.97 16 21 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 22 C -0.15 -2.73 10.05 -39.58 -0.40 -3.13 16 23 C -0.14 -2.51 10.05 -39.58 -0.40 -2.90 16 24 C -0.10 -2.08 9.06 -39.58 -0.36 -2.44 16 25 H 0.05 0.93 6.57 -51.93 -0.34 0.59 16 26 H 0.06 1.19 6.64 -51.93 -0.35 0.84 16 27 H 0.05 0.71 7.30 -51.93 -0.38 0.34 16 28 H 0.10 1.58 6.35 -51.93 -0.33 1.25 16 29 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.15 7.61 -51.93 -0.40 0.75 16 33 H 0.02 0.40 6.86 -51.93 -0.36 0.05 16 34 H 0.04 0.69 6.08 -51.93 -0.32 0.38 16 35 H 0.07 1.48 7.11 -51.93 -0.37 1.11 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.12 2.61 8.00 -52.49 -0.42 2.19 16 38 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.12 2.50 7.90 -52.49 -0.41 2.09 16 LS Contribution 324.54 15.07 4.89 4.89 Total: -1.00 -26.73 324.54 -9.82 -36.55 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.36 Total: 6.92 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -3.11 Total: -28.85 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.22 Total: -35.45 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.73 -9.82 -36.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.753 kcal (2) G-P(sol) polarization free energy of solvation -26.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds