Wall clock time and date at job start Mon Mar 30 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47350 * 2 1 4 4 C 1.52999 * 109.46888 * 240.00011 * 2 1 3 5 5 C 1.53000 * 117.50047 * 128.74880 * 4 2 1 6 6 C 1.53001 * 117.49890 * 60.08823 * 4 2 1 7 7 N 1.46903 * 109.47167 * 120.00028 * 2 1 3 8 8 C 1.46900 * 110.99815 * 53.47071 * 7 2 1 9 9 C 1.46902 * 111.00017 * 289.51466 * 7 2 1 10 10 H 1.08993 * 109.46971 * 57.00730 * 9 7 2 11 11 C 1.50698 * 109.46697 * 177.00483 * 9 7 2 12 12 H 1.07998 * 120.00447 * 35.22124 * 11 9 7 13 13 C 1.37878 * 119.99803 * 215.21432 * 11 9 7 14 14 N 1.31513 * 119.99926 * 5.52338 * 13 11 9 15 15 Si 1.86801 * 120.00255 * 185.52234 * 13 11 9 16 16 H 1.48502 * 109.47233 * 89.99829 * 15 13 11 17 17 H 1.48495 * 109.47239 * 210.00002 * 15 13 11 18 18 H 1.48503 * 109.46871 * 330.00452 * 15 13 11 19 19 C 1.50698 * 109.46840 * 297.00368 * 9 7 2 20 20 C 1.38237 * 119.99458 * 134.29316 * 19 9 7 21 21 C 1.38237 * 119.99869 * 179.97438 * 20 19 9 22 22 C 1.38237 * 120.00002 * 359.96145 * 21 20 19 23 23 C 1.38237 * 120.00026 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00371 * 314.26950 * 19 9 7 25 25 H 1.08995 * 109.47558 * 179.87465 * 1 2 3 26 26 H 1.09005 * 109.46730 * 299.87370 * 1 2 3 27 27 H 1.08999 * 109.47325 * 59.87043 * 1 2 3 28 28 H 1.08999 * 115.55057 * 274.41677 * 4 2 1 29 29 H 1.09004 * 117.49610 * 359.97438 * 5 4 2 30 30 H 1.08998 * 117.50327 * 145.02092 * 5 4 2 31 31 H 1.09001 * 117.49829 * 214.97614 * 6 4 2 32 32 H 1.08991 * 117.49950 * 359.97438 * 6 4 2 33 33 H 1.09001 * 109.46891 * 289.45189 * 8 7 2 34 34 H 1.08997 * 109.47372 * 49.45919 * 8 7 2 35 35 H 1.09005 * 109.46979 * 169.45759 * 8 7 2 36 36 H 0.97003 * 120.00157 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.00599 * 359.97438 * 20 19 9 38 38 H 1.07999 * 120.00393 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.00095 * 179.72088 * 22 21 20 40 40 H 1.07997 * 119.99991 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.00127 * 0.02562 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.0762 0.0039 -2.1101 6 6 1.6373 -0.1483 -2.6096 7 7 2.0196 -0.6925 1.1994 8 6 1.4255 -2.0311 1.3139 9 6 1.7632 0.1024 2.4079 10 1 0.6966 0.3131 2.4846 11 6 2.2113 -0.6701 3.6217 12 1 3.0842 -1.3036 3.5668 13 6 1.5068 -0.5681 4.8025 14 7 0.3841 0.1157 4.8414 15 14 2.1469 -1.4012 6.3471 16 1 3.0330 -0.4645 7.0838 17 1 1.0031 -1.7849 7.2128 18 1 2.9137 -2.6165 5.9724 19 6 2.5269 1.3991 2.3275 20 6 1.9030 2.5897 2.6501 21 6 2.6036 3.7791 2.5770 22 6 3.9284 3.7778 2.1820 23 6 4.5526 2.5870 1.8607 24 6 3.8514 1.3978 1.9318 25 1 -0.3634 -1.0276 -0.0022 26 1 -0.3633 0.5119 0.8912 27 1 -0.3634 0.5158 -0.8888 28 1 2.1252 -1.8046 -1.1647 29 1 3.3944 0.9950 -1.7867 30 1 3.8430 -0.6024 -2.5923 31 1 1.4581 -0.8547 -3.4202 32 1 1.0088 0.7422 -2.6146 33 1 0.3691 -1.9393 1.5663 34 1 1.5279 -2.5565 0.3644 35 1 1.9386 -2.5907 2.0960 36 1 -0.1118 0.1872 5.6721 37 1 0.8682 2.5908 2.9593 38 1 2.1162 4.7094 2.8286 39 1 4.4744 4.7075 2.1205 40 1 5.5875 2.5860 1.5517 41 1 4.3388 0.4676 1.6797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:22 Heat of formation + Delta-G solvation = 40.417098 kcal Electronic energy + Delta-G solvation = -20160.822437 eV Core-core repulsion = 17426.783477 eV Total energy + Delta-G solvation = -2734.038960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51527 -39.09982 -36.95564 -34.62428 -32.33209 -31.50943 -30.70074 -28.26751 -26.87690 -25.26038 -23.39115 -23.04931 -22.98738 -21.44569 -19.98149 -18.52150 -17.40875 -17.08948 -16.61845 -15.99426 -15.86474 -15.36961 -15.11911 -14.86401 -14.48902 -14.08327 -13.92397 -13.78071 -13.34216 -13.11996 -12.95976 -12.92191 -12.77457 -12.69796 -12.33468 -12.14980 -11.95746 -11.76675 -11.57816 -11.34798 -11.23960 -10.97139 -10.74160 -10.61575 -9.55956 -9.25077 -8.78261 -8.13430 -6.22675 0.76189 0.81800 1.38375 1.40021 1.49009 2.39155 2.95174 3.10260 3.28663 3.52203 3.89417 4.12698 4.24836 4.29482 4.32994 4.37479 4.46463 4.50606 4.59182 4.64412 4.72662 4.84071 4.88586 4.91363 4.97329 5.01215 5.07695 5.12040 5.20661 5.28926 5.35717 5.36727 5.48569 5.51600 5.57877 5.70140 5.81980 5.88031 6.10199 6.17326 6.39766 6.49094 6.85850 6.97861 7.43978 8.91016 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.008802 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.124101 B = 3180.300092 C = 4214.650526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 H 0.058 0.942 4 C -0.148 4.148 5 C -0.172 4.172 6 C -0.168 4.168 7 N -0.530 5.530 8 C 0.052 3.948 9 C 0.239 3.761 10 H 0.009 0.991 11 C -0.502 4.502 12 H 0.053 0.947 13 C 0.020 3.980 14 N -0.916 5.916 15 Si 0.950 3.050 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.266 1.266 19 C -0.043 4.043 20 C -0.144 4.144 21 C -0.131 4.131 22 C -0.144 4.144 23 C -0.129 4.129 24 C -0.112 4.112 25 H 0.056 0.944 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.001 0.999 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.261 0.739 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.047 2.345 -11.075 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 H 0.076 0.924 4 C -0.166 4.166 5 C -0.209 4.209 6 C -0.205 4.205 7 N -0.253 5.253 8 C -0.096 4.096 9 C 0.132 3.868 10 H 0.027 0.973 11 C -0.541 4.541 12 H 0.071 0.929 13 C -0.180 4.180 14 N -0.555 5.555 15 Si 0.776 3.224 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.044 4.044 20 C -0.163 4.163 21 C -0.149 4.149 22 C -0.162 4.162 23 C -0.147 4.147 24 C -0.131 4.131 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.019 0.981 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.148 0.852 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.406 2.318 -10.990 12.065 hybrid contribution -1.100 -0.314 1.553 1.929 sum 3.306 2.004 -9.437 10.198 Atomic orbital electron populations 1.22302 0.98157 1.01664 1.00823 1.21134 0.91879 0.96737 0.89749 0.92382 1.22185 1.04837 0.99092 0.90523 1.22967 0.92712 1.01675 1.03501 1.23002 0.97782 1.03250 0.96455 1.62242 1.57834 1.03009 1.02258 1.22021 0.95826 0.91171 1.00611 1.18252 0.93313 0.87949 0.87265 0.97280 1.21130 1.11584 1.26227 0.95125 0.92854 1.25649 0.94636 0.96005 1.01717 1.70035 1.15326 1.42760 1.27404 0.85682 0.77918 0.79051 0.79796 1.20633 1.20985 1.19002 1.20395 0.95247 0.94906 0.93870 1.21045 0.99564 0.93448 1.02218 1.21249 0.95546 0.97315 1.00785 1.21249 0.94633 0.98702 1.01617 1.21384 1.00333 0.92367 1.00637 1.20972 0.93867 0.98135 1.00106 0.92514 0.95458 0.91086 0.87786 0.89844 0.87801 0.87223 0.89094 0.98065 0.90893 0.92884 0.93008 0.89241 0.85164 0.83780 0.84263 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.07 8.29 71.98 0.60 -5.48 16 2 C 0.11 4.12 2.36 44.91 0.11 4.22 16 3 H 0.06 2.29 6.50 -2.39 -0.02 2.27 16 4 C -0.15 -4.28 5.10 -10.79 -0.05 -4.33 16 5 C -0.17 -4.29 10.18 30.62 0.31 -3.98 16 6 C -0.17 -3.84 9.74 30.62 0.30 -3.54 16 7 N -0.53 -22.39 4.04 -880.63 -3.56 -25.95 16 8 C 0.05 2.10 8.03 127.69 1.02 3.13 16 9 C 0.24 11.84 1.67 43.42 0.07 11.91 16 10 H 0.01 0.53 5.42 -2.39 -0.01 0.52 16 11 C -0.50 -27.23 6.85 25.60 0.18 -27.05 16 12 H 0.05 2.93 7.71 -2.91 -0.02 2.91 16 13 C 0.02 1.09 5.45 84.66 0.46 1.55 16 14 N -0.92 -52.90 12.76 21.45 0.27 -52.62 16 15 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 C -0.04 -1.99 3.49 -19.87 -0.07 -2.06 16 20 C -0.14 -6.45 9.67 22.27 0.22 -6.24 16 21 C -0.13 -4.79 10.05 22.27 0.22 -4.56 16 22 C -0.14 -4.64 10.05 22.27 0.22 -4.41 16 23 C -0.13 -4.40 10.05 22.27 0.22 -4.17 16 24 C -0.11 -4.62 9.06 22.27 0.20 -4.42 16 25 H 0.06 1.96 6.57 -2.39 -0.02 1.95 16 26 H 0.03 1.13 6.64 -2.38 -0.02 1.11 16 27 H 0.07 2.13 7.30 -2.39 -0.02 2.11 16 28 H 0.10 2.99 6.35 -2.39 -0.02 2.98 16 29 H 0.08 2.23 8.05 -2.38 -0.02 2.21 16 30 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.08 7.61 -2.39 -0.02 2.06 16 33 H 0.00 0.03 6.86 -2.39 -0.02 0.02 16 34 H 0.07 2.44 6.08 -2.39 -0.01 2.42 16 35 H 0.05 2.30 7.11 -2.38 -0.02 2.28 16 36 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.09 4.36 8.00 -2.91 -0.02 4.34 16 38 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.11 4.70 7.90 -2.91 -0.02 4.68 16 Total: -1.00 -60.35 324.54 3.75 -56.60 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.99 Total: 25.31 kcal Atomic # 6 Polarization: -53.44 SS G_CDS: 4.01 Total: -49.43 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -3.29 Total: -78.58 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -60.35 3.75 -56.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.022 kcal (2) G-P(sol) polarization free energy of solvation -60.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds