Wall clock time and date at job start Mon Mar 30 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.49885 * 2 1 4 4 C 1.53114 * 109.50232 * 239.87819 * 2 1 3 5 5 C 1.53118 * 109.16072 * 182.39969 * 4 2 1 6 6 C 1.53042 * 109.27491 * 57.65982 * 5 4 2 7 7 N 1.46845 * 109.52102 * 300.82019 * 6 5 4 8 8 C 1.46904 * 111.00050 * 185.83730 * 7 6 5 9 9 C 1.50706 * 109.46792 * 45.78774 * 8 7 6 10 10 C 1.38661 * 119.87506 * 90.00130 * 9 8 7 11 11 C 1.38606 * 120.50390 * 180.29835 * 10 9 8 12 12 C 1.37641 * 120.24763 * 359.44506 * 11 10 9 13 13 C 1.40695 * 119.74153 * 0.54880 * 12 11 10 14 14 C 1.41396 * 120.24480 * 179.70266 * 13 12 11 15 15 H 1.08003 * 119.99896 * 155.22751 * 14 13 12 16 16 C 1.39948 * 120.00082 * 335.23170 * 14 13 12 17 17 N 1.30824 * 119.99465 * 342.31270 * 16 14 13 18 18 Si 1.86797 * 120.00067 * 162.31312 * 16 14 13 19 19 H 1.48493 * 109.47156 * 89.99995 * 18 16 14 20 20 H 1.48501 * 109.46917 * 209.99882 * 18 16 14 21 21 H 1.48501 * 109.47235 * 329.99665 * 18 16 14 22 22 C 1.37597 * 119.88109 * 270.02296 * 9 8 7 23 23 C 1.46848 * 111.20134 * 61.74278 * 7 6 5 24 24 H 1.08997 * 109.47153 * 299.91958 * 1 2 3 25 25 H 1.08994 * 109.47268 * 59.92315 * 1 2 3 26 26 H 1.09003 * 109.46996 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.52698 * 302.30909 * 4 2 1 28 28 H 1.09010 * 109.51908 * 62.44162 * 4 2 1 29 29 H 1.09000 * 109.50470 * 177.59388 * 5 4 2 30 30 H 1.08995 * 109.50832 * 297.67990 * 5 4 2 31 31 H 1.09003 * 109.46061 * 180.80381 * 6 5 4 32 32 H 1.08994 * 109.46084 * 60.83466 * 6 5 4 33 33 H 1.08998 * 109.47327 * 285.79211 * 8 7 6 34 34 H 1.08997 * 109.47764 * 165.78455 * 8 7 6 35 35 H 1.08008 * 119.74779 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.87724 * 179.72561 * 11 10 9 37 37 H 1.08003 * 120.13229 * 180.30138 * 12 11 10 38 38 H 0.97008 * 119.99290 * 180.02562 * 17 16 14 39 39 H 1.08006 * 120.12269 * 359.95536 * 22 9 8 40 40 H 1.09003 * 109.45964 * 58.27312 * 23 7 6 41 41 H 1.08996 * 109.46497 * 178.23674 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7243 -1.2484 5 6 3.5712 -0.7723 -1.2105 6 6 4.0230 -1.4729 0.0730 7 7 3.5093 -0.7416 1.2381 8 6 4.0372 -1.3049 2.4880 9 6 5.5198 -1.5361 2.3478 10 6 6.4112 -0.5322 2.6944 11 6 7.7772 -0.7286 2.5649 12 6 8.2641 -1.9293 2.1006 13 6 7.3689 -2.9552 1.7459 14 6 7.8573 -4.1907 1.2618 15 1 7.2606 -5.0850 1.3651 16 6 9.1138 -4.2547 0.6489 17 7 9.6841 -3.1619 0.2107 18 14 9.9764 -5.9004 0.4564 19 1 9.5888 -6.5139 -0.8391 20 1 11.4468 -5.6950 0.4866 21 1 9.5794 -6.8005 1.5689 22 6 5.9839 -2.7425 1.8761 23 6 2.0409 -0.7230 1.2483 24 1 -0.3633 0.5126 0.8907 25 1 -0.3633 0.5150 -0.8892 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6453 -1.7396 -1.2683 28 1 1.7147 -0.1884 -2.1397 29 1 3.9395 -1.3242 -2.0753 30 1 3.9678 0.2427 -1.2306 31 1 5.1121 -1.4961 0.1099 32 1 3.6375 -2.4924 0.0852 33 1 3.5401 -2.2519 2.6982 34 1 3.8539 -0.6088 3.3063 35 1 6.0382 0.4117 3.0639 36 1 8.4622 0.0619 2.8337 37 1 9.3290 -2.0821 2.0050 38 1 10.5549 -3.2064 -0.2146 39 1 5.2878 -3.5233 1.6071 40 1 1.6648 -1.7460 1.2551 41 1 1.6905 -0.2015 2.1390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057661213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:09 Heat of formation + Delta-G solvation = -0.689018 kcal Electronic energy + Delta-G solvation = -19416.389836 eV Core-core repulsion = 16680.568381 eV Total energy + Delta-G solvation = -2735.821455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.13057 -37.39663 -34.50337 -33.29043 -31.68179 -29.84840 -29.77052 -26.31805 -25.71334 -25.05016 -22.58102 -21.53948 -20.66741 -19.72102 -19.34494 -16.87175 -15.54645 -15.32043 -14.93923 -14.65695 -14.35387 -14.09423 -13.94422 -13.39013 -13.24636 -12.74869 -12.51572 -12.31127 -12.02654 -11.78177 -11.61222 -11.50440 -11.31744 -10.98704 -10.92533 -10.76578 -10.60703 -10.45600 -10.35180 -10.05412 -10.00569 -9.49063 -9.35751 -9.11572 -7.88681 -7.40788 -7.21054 -6.72921 -4.32983 2.81154 2.93404 3.07927 3.12012 3.24464 3.94952 4.36563 4.70055 4.85886 4.99044 5.07995 5.37514 5.57116 5.62412 5.65109 5.68668 5.77855 5.79134 5.82178 5.87554 5.99684 6.04762 6.15074 6.19713 6.27019 6.29680 6.39200 6.42296 6.58331 6.65019 6.73714 6.94613 7.08159 7.24310 7.40685 7.53163 7.58925 7.66003 7.94989 8.06739 8.14906 8.30971 8.66255 8.92163 9.00251 10.21980 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.004993 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.706139 B = 5606.281088 C = 6107.324995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.117 4.117 6 C 0.053 3.947 7 N -0.531 5.531 8 C 0.104 3.896 9 C -0.066 4.066 10 C -0.215 4.215 11 C -0.109 4.109 12 C -0.160 4.160 13 C 0.109 3.891 14 C -0.467 4.467 15 H 0.075 0.925 16 C 0.078 3.922 17 N -0.796 5.796 18 Si 0.904 3.096 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.215 4.215 23 C 0.060 3.940 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.025 0.975 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.087 0.913 40 H 0.027 0.973 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 3.498 -1.168 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.075 4.075 7 N -0.255 5.255 8 C -0.023 4.023 9 C -0.067 4.067 10 C -0.235 4.235 11 C -0.128 4.128 12 C -0.179 4.179 13 C 0.106 3.894 14 C -0.496 4.496 15 H 0.093 0.907 16 C -0.140 4.140 17 N -0.421 5.421 18 Si 0.729 3.271 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.235 4.235 23 C -0.068 4.068 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.045 0.955 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.576 4.056 -1.330 11.404 hybrid contribution 0.197 -1.552 -0.140 1.570 sum -10.379 2.504 -1.470 10.777 Atomic orbital electron populations 1.21797 0.95479 1.01527 1.01460 1.21154 0.94506 1.00387 0.94733 0.90504 1.21644 0.96376 0.99996 0.97178 1.21598 0.94847 1.01609 0.97427 1.22228 1.02466 0.93834 0.88962 1.62005 1.06267 1.54522 1.02693 1.20973 0.93260 0.96793 0.91236 1.19094 0.92247 0.94765 1.00552 1.20197 0.92962 0.98136 1.12188 1.20686 0.94483 0.96943 1.00679 1.21339 0.99849 0.93795 1.02934 1.17545 0.90460 0.92864 0.88493 1.19516 1.01044 0.95138 1.33943 0.90708 1.25865 0.97054 0.97945 0.93108 1.69830 1.15371 1.29350 1.27559 0.86381 0.78637 0.82550 0.79555 1.19576 1.20127 1.18541 1.20817 0.95180 0.96452 1.11073 1.22109 0.88516 0.98343 0.97811 0.92787 0.92720 0.92972 0.92598 0.92361 0.91837 0.91382 0.88291 0.95644 0.95383 0.91276 0.89471 0.89501 0.86602 0.90982 0.89506 0.95519 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.20 37.16 0.34 -1.08 16 2 C -0.09 -1.10 2.88 -90.54 -0.26 -1.36 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.11 -1.45 5.29 -26.61 -0.14 -1.59 16 5 C -0.12 -1.77 6.09 -26.65 -0.16 -1.93 16 6 C 0.05 0.95 4.57 -3.83 -0.02 0.93 16 7 N -0.53 -9.17 4.80 -236.11 -1.13 -10.30 16 8 C 0.10 1.92 5.42 -4.97 -0.03 1.89 16 9 C -0.07 -1.46 4.13 -104.70 -0.43 -1.89 16 10 C -0.21 -4.85 9.70 -39.29 -0.38 -5.23 16 11 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 12 C -0.16 -4.17 8.70 -38.87 -0.34 -4.51 16 13 C 0.11 2.88 5.57 -106.83 -0.60 2.29 16 14 C -0.47 -12.41 9.05 -37.74 -0.34 -12.75 16 15 H 0.07 1.92 7.91 -52.48 -0.41 1.51 16 16 C 0.08 1.95 5.14 -17.34 -0.09 1.87 16 17 N -0.80 -20.65 10.97 55.55 0.61 -20.04 16 18 Si 0.90 18.76 29.59 -169.99 -5.03 13.73 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 22 C -0.21 -5.20 7.51 -38.87 -0.29 -5.49 16 23 C 0.06 0.85 4.71 -3.83 -0.02 0.84 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.10 2.15 5.64 -51.93 -0.29 1.86 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.03 0.51 8.02 -51.93 -0.42 0.09 16 34 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 35 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.12 3.13 6.18 -52.48 -0.32 2.80 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.09 2.04 8.06 -52.48 -0.42 1.62 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 322.51 15.07 4.86 4.86 Total: -1.00 -26.69 322.51 -10.77 -37.45 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.92 Total: 5.31 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -3.15 Total: -31.01 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: -0.52 Total: -30.34 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.69 -10.77 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.763 kcal (2) G-P(sol) polarization free energy of solvation -26.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds