Wall clock time and date at job start Mon Mar 30 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.49885 * 2 1 4 4 C 1.53114 * 109.50232 * 239.87819 * 2 1 3 5 5 C 1.53118 * 109.16072 * 182.39969 * 4 2 1 6 6 C 1.53042 * 109.27491 * 57.65982 * 5 4 2 7 7 N 1.46845 * 109.52102 * 300.82019 * 6 5 4 8 8 C 1.46904 * 111.00050 * 185.83730 * 7 6 5 9 9 C 1.50706 * 109.46792 * 45.78774 * 8 7 6 10 10 C 1.38661 * 119.87506 * 90.00130 * 9 8 7 11 11 C 1.38606 * 120.50390 * 180.29835 * 10 9 8 12 12 C 1.37641 * 120.24763 * 359.44506 * 11 10 9 13 13 C 1.40695 * 119.74153 * 0.54880 * 12 11 10 14 14 C 1.41396 * 120.24480 * 179.70266 * 13 12 11 15 15 H 1.08003 * 119.99896 * 155.22751 * 14 13 12 16 16 C 1.39948 * 120.00082 * 335.23170 * 14 13 12 17 17 N 1.30824 * 119.99465 * 342.31270 * 16 14 13 18 18 Si 1.86797 * 120.00067 * 162.31312 * 16 14 13 19 19 H 1.48493 * 109.47156 * 89.99995 * 18 16 14 20 20 H 1.48501 * 109.46917 * 209.99882 * 18 16 14 21 21 H 1.48501 * 109.47235 * 329.99665 * 18 16 14 22 22 C 1.37597 * 119.88109 * 270.02296 * 9 8 7 23 23 C 1.46848 * 111.20134 * 61.74278 * 7 6 5 24 24 H 1.08997 * 109.47153 * 299.91958 * 1 2 3 25 25 H 1.08994 * 109.47268 * 59.92315 * 1 2 3 26 26 H 1.09003 * 109.46996 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.52698 * 302.30909 * 4 2 1 28 28 H 1.09010 * 109.51908 * 62.44162 * 4 2 1 29 29 H 1.09000 * 109.50470 * 177.59388 * 5 4 2 30 30 H 1.08995 * 109.50832 * 297.67990 * 5 4 2 31 31 H 1.09003 * 109.46061 * 180.80381 * 6 5 4 32 32 H 1.08994 * 109.46084 * 60.83466 * 6 5 4 33 33 H 1.08998 * 109.47327 * 285.79211 * 8 7 6 34 34 H 1.08997 * 109.47764 * 165.78455 * 8 7 6 35 35 H 1.08008 * 119.74779 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.87724 * 179.72561 * 11 10 9 37 37 H 1.08003 * 120.13229 * 180.30138 * 12 11 10 38 38 H 0.97008 * 119.99290 * 180.02562 * 17 16 14 39 39 H 1.08006 * 120.12269 * 359.95536 * 22 9 8 40 40 H 1.09003 * 109.45964 * 58.27312 * 23 7 6 41 41 H 1.08996 * 109.46497 * 178.23674 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7243 -1.2484 5 6 3.5712 -0.7723 -1.2105 6 6 4.0230 -1.4729 0.0730 7 7 3.5093 -0.7416 1.2381 8 6 4.0372 -1.3049 2.4880 9 6 5.5198 -1.5361 2.3478 10 6 6.4112 -0.5322 2.6944 11 6 7.7772 -0.7286 2.5649 12 6 8.2641 -1.9293 2.1006 13 6 7.3689 -2.9552 1.7459 14 6 7.8573 -4.1907 1.2618 15 1 7.2606 -5.0850 1.3651 16 6 9.1138 -4.2547 0.6489 17 7 9.6841 -3.1619 0.2107 18 14 9.9764 -5.9004 0.4564 19 1 9.5888 -6.5139 -0.8391 20 1 11.4468 -5.6950 0.4866 21 1 9.5794 -6.8005 1.5689 22 6 5.9839 -2.7425 1.8761 23 6 2.0409 -0.7230 1.2483 24 1 -0.3633 0.5126 0.8907 25 1 -0.3633 0.5150 -0.8892 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6453 -1.7396 -1.2683 28 1 1.7147 -0.1884 -2.1397 29 1 3.9395 -1.3242 -2.0753 30 1 3.9678 0.2427 -1.2306 31 1 5.1121 -1.4961 0.1099 32 1 3.6375 -2.4924 0.0852 33 1 3.5401 -2.2519 2.6982 34 1 3.8539 -0.6088 3.3063 35 1 6.0382 0.4117 3.0639 36 1 8.4622 0.0619 2.8337 37 1 9.3290 -2.0821 2.0050 38 1 10.5549 -3.2064 -0.2146 39 1 5.2878 -3.5233 1.6071 40 1 1.6648 -1.7460 1.2551 41 1 1.6905 -0.2015 2.1390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057661213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:09 Heat of formation + Delta-G solvation = -13.697629 kcal Electronic energy + Delta-G solvation = -19416.953931 eV Core-core repulsion = 16680.568381 eV Total energy + Delta-G solvation = -2736.385550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52857 -39.07413 -36.06090 -34.92884 -32.86627 -31.73193 -31.48324 -27.48493 -27.27772 -26.80792 -23.86529 -22.94142 -22.49327 -21.41360 -20.51142 -18.76587 -17.20924 -16.85699 -16.46125 -16.22874 -15.84653 -15.41067 -15.17636 -14.85567 -14.84011 -14.24870 -13.95258 -13.56105 -13.41742 -13.33865 -13.09915 -12.94234 -12.72220 -12.65275 -12.47749 -12.30229 -12.12417 -11.92250 -11.53437 -11.47457 -11.28894 -11.12172 -11.06851 -11.00975 -9.38128 -9.32823 -9.00712 -8.62812 -6.34051 0.99983 1.04687 1.36602 1.47937 1.53581 2.20226 2.70015 3.10861 3.75249 3.85293 3.93148 3.97591 4.14135 4.30591 4.30779 4.45233 4.57192 4.58116 4.69183 4.70243 4.74854 4.78799 4.87030 4.89619 4.97391 5.03402 5.08195 5.12543 5.17491 5.22994 5.30778 5.34417 5.41035 5.51368 5.55510 5.70870 6.03008 6.08542 6.15293 6.21975 6.29019 6.41039 6.70759 6.95031 7.04997 8.34376 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.004993 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.706139 B = 5606.281088 C = 6107.324995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.059 3.941 7 N -0.535 5.535 8 C 0.108 3.892 9 C -0.059 4.059 10 C -0.216 4.216 11 C -0.112 4.112 12 C -0.187 4.187 13 C 0.080 3.920 14 C -0.505 4.505 15 H 0.070 0.930 16 C 0.037 3.963 17 N -0.827 5.827 18 Si 0.979 3.021 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.260 1.260 22 C -0.223 4.223 23 C 0.058 3.942 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.015 0.985 33 H 0.031 0.969 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.287 0.713 39 H 0.084 0.916 40 H 0.026 0.974 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.709 4.105 -1.266 13.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.069 4.069 7 N -0.260 5.260 8 C -0.019 4.019 9 C -0.059 4.059 10 C -0.235 4.235 11 C -0.130 4.130 12 C -0.207 4.207 13 C 0.078 3.922 14 C -0.534 4.534 15 H 0.089 0.911 16 C -0.177 4.177 17 N -0.453 5.453 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.189 1.189 21 H -0.184 1.184 22 C -0.244 4.244 23 C -0.069 4.069 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.049 0.951 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.044 0.956 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.362 4.679 -1.425 13.294 hybrid contribution 0.677 -1.648 -0.090 1.784 sum -11.684 3.032 -1.514 12.166 Atomic orbital electron populations 1.21741 0.93159 1.02072 1.02645 1.21149 0.96322 0.99624 0.93355 0.90878 1.21626 0.93985 1.00591 0.98489 1.21572 0.97103 1.00775 0.95781 1.22052 0.99791 0.94055 0.91036 1.62037 1.08524 1.53803 1.01594 1.20958 0.90648 0.97719 0.92607 1.19441 0.94603 0.93544 0.98339 1.20533 0.92513 0.99147 1.11353 1.20965 0.95709 0.96595 0.99768 1.21281 0.99062 0.95135 1.05227 1.17894 0.91681 0.93423 0.89236 1.19761 1.02647 0.95233 1.35796 0.91138 1.26703 0.97095 1.01819 0.92095 1.69886 1.15953 1.31510 1.27937 0.85264 0.77667 0.77530 0.79606 1.18703 1.18945 1.18417 1.20882 0.94364 0.97494 1.11625 1.22263 0.86099 0.98896 0.99678 0.91815 0.91414 0.92739 0.92443 0.90271 0.91715 0.91895 0.92622 0.96629 0.95092 0.89250 0.86886 0.87311 0.88327 0.90232 0.89825 0.95554 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.20 71.98 0.66 -1.56 16 2 C -0.09 -1.86 2.88 -10.74 -0.03 -1.90 16 3 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.11 -2.52 5.29 30.67 0.16 -2.35 16 5 C -0.11 -3.39 6.09 30.65 0.19 -3.20 16 6 C 0.06 2.13 4.57 86.33 0.39 2.53 16 7 N -0.54 -17.78 4.80 -900.91 -4.32 -22.11 16 8 C 0.11 3.82 5.42 85.56 0.46 4.29 16 9 C -0.06 -2.60 4.13 -19.91 -0.08 -2.68 16 10 C -0.22 -9.58 9.70 22.46 0.22 -9.37 16 11 C -0.11 -5.36 10.02 22.22 0.22 -5.14 16 12 C -0.19 -10.17 8.70 22.73 0.20 -9.97 16 13 C 0.08 4.43 5.57 -21.29 -0.12 4.31 16 14 C -0.50 -28.05 9.05 23.46 0.21 -27.84 16 15 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 16 C 0.04 1.94 5.14 85.26 0.44 2.37 16 17 N -0.83 -44.32 10.97 21.83 0.24 -44.08 16 18 Si 0.98 39.12 29.59 68.60 2.03 41.15 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 20 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 C -0.22 -11.19 7.51 22.73 0.17 -11.02 16 23 C 0.06 1.50 4.71 86.33 0.41 1.90 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 2.50 5.64 -2.39 -0.01 2.49 16 32 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.03 1.08 8.02 -2.39 -0.02 1.06 16 34 H 0.09 2.83 8.08 -2.39 -0.02 2.81 16 35 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 36 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.10 5.60 6.18 -2.91 -0.02 5.58 16 38 H 0.29 13.90 8.30 -92.70 -0.77 13.13 16 39 H 0.08 4.12 8.06 -2.91 -0.02 4.09 16 40 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 Total: -1.00 -59.41 322.51 2.42 -56.99 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.97 Total: 27.67 kcal Atomic # 6 Polarization: -63.13 SS G_CDS: 3.50 Total: -59.62 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -4.08 Total: -66.18 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -59.41 2.42 -56.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.291 kcal (2) G-P(sol) polarization free energy of solvation -59.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds