Wall clock time and date at job start Mon Mar 30 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.50409 * 2 1 4 4 C 1.53126 * 109.50528 * 120.11487 * 2 1 3 5 5 C 1.53117 * 109.16114 * 177.59550 * 4 2 1 6 6 C 1.53032 * 109.28153 * 302.34827 * 5 4 2 7 7 N 1.46850 * 109.52217 * 59.17865 * 6 5 4 8 8 C 1.46901 * 110.99988 * 174.16270 * 7 6 5 9 9 C 1.50708 * 109.47135 * 294.20908 * 8 7 6 10 10 C 1.38657 * 119.87605 * 270.02255 * 9 8 7 11 11 C 1.38606 * 120.50257 * 179.97438 * 10 9 8 12 12 C 1.37648 * 120.24942 * 359.75756 * 11 10 9 13 13 C 1.40695 * 119.73846 * 0.49570 * 12 11 10 14 14 C 1.41402 * 120.24440 * 179.76200 * 13 12 11 15 15 H 1.08002 * 120.00094 * 206.19277 * 14 13 12 16 16 C 1.39941 * 119.99477 * 26.18565 * 14 13 12 17 17 N 1.30823 * 119.99802 * 203.54236 * 16 14 13 18 18 Si 1.86797 * 120.00385 * 23.54251 * 16 14 13 19 19 H 1.48503 * 109.47525 * 263.26698 * 18 16 14 20 20 H 1.48497 * 109.47041 * 23.26723 * 18 16 14 21 21 H 1.48504 * 109.47213 * 143.26431 * 18 16 14 22 22 C 1.37598 * 119.87321 * 90.00048 * 9 8 7 23 23 C 1.46845 * 111.19955 * 298.25646 * 7 6 5 24 24 H 1.09006 * 109.46472 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47188 * 300.07502 * 1 2 3 26 26 H 1.09000 * 109.47302 * 60.08467 * 1 2 3 27 27 H 1.08996 * 109.52126 * 297.50522 * 4 2 1 28 28 H 1.09004 * 109.51838 * 57.69339 * 4 2 1 29 29 H 1.09004 * 109.50280 * 62.28707 * 5 4 2 30 30 H 1.08994 * 109.50393 * 182.36399 * 5 4 2 31 31 H 1.08998 * 109.46662 * 299.16466 * 6 5 4 32 32 H 1.09000 * 109.46749 * 179.19302 * 6 5 4 33 33 H 1.08996 * 109.47160 * 174.20973 * 8 7 6 34 34 H 1.09000 * 109.47330 * 54.20801 * 8 7 6 35 35 H 1.08004 * 119.74423 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.87729 * 180.02562 * 11 10 9 37 37 H 1.07991 * 120.13077 * 180.27415 * 12 11 10 38 38 H 0.97001 * 120.00453 * 353.16402 * 17 16 14 39 39 H 1.08000 * 120.12900 * 0.02562 * 22 9 8 40 40 H 1.08994 * 109.46646 * 181.75860 * 23 7 6 41 41 H 1.09000 * 109.46160 * 301.74016 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7242 1.2486 5 6 3.5712 -0.7723 1.2105 6 6 4.0230 -1.4729 -0.0728 7 7 3.5093 -0.7416 -1.2381 8 6 4.0373 -1.3049 -2.4878 9 6 5.5270 -1.0851 -2.5480 10 6 6.0320 0.0700 -3.1254 11 6 7.3998 0.2856 -3.1872 12 6 8.2725 -0.6448 -2.6702 13 6 7.7716 -1.8230 -2.0868 14 6 8.6587 -2.7883 -1.5570 15 1 8.3592 -3.8246 -1.5024 16 6 9.9246 -2.4009 -1.1035 17 7 10.8961 -3.2754 -1.0499 18 14 10.2273 -0.6350 -0.5748 19 1 10.8297 0.1227 -1.7010 20 1 8.9388 -0.0063 -0.1883 21 1 11.1542 -0.6177 0.5853 22 6 6.3809 -2.0313 -2.0293 23 6 2.0410 -0.7230 -1.2483 24 1 -0.3632 -1.0278 0.0005 25 1 -0.3633 0.5150 0.8893 26 1 -0.3634 0.5125 -0.8907 27 1 1.7156 -0.1877 2.1397 28 1 1.6453 -1.7396 1.2684 29 1 3.9678 0.2429 1.2299 30 1 3.9396 -1.3234 2.0757 31 1 3.6376 -2.4924 -0.0851 32 1 5.1121 -1.4961 -0.1099 33 1 3.5629 -0.8131 -3.3370 34 1 3.8260 -2.3737 -2.5224 35 1 5.3543 0.8072 -3.5301 36 1 7.7821 1.1891 -3.6389 37 1 9.3377 -0.4727 -2.7155 38 1 10.7163 -4.2117 -1.2288 39 1 5.9854 -2.9303 -1.5801 40 1 1.6905 -0.2016 -2.1389 41 1 1.6649 -1.7460 -1.2548 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057661215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:11 Heat of formation + Delta-G solvation = -20.282377 kcal Electronic energy + Delta-G solvation = -19434.682634 eV Core-core repulsion = 16698.011548 eV Total energy + Delta-G solvation = -2736.671086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51168 -39.27281 -36.07791 -35.11361 -32.94408 -32.09940 -31.68918 -27.42609 -27.36882 -26.53574 -23.97573 -22.94284 -22.39432 -21.68655 -20.53756 -19.66046 -17.34783 -16.86093 -16.35406 -16.29531 -15.67372 -15.51434 -15.32323 -15.16276 -14.83008 -14.45869 -13.92469 -13.86618 -13.71158 -13.36474 -13.20598 -12.80939 -12.77683 -12.69149 -12.34962 -12.12193 -11.94265 -11.90842 -11.65347 -11.51581 -11.33847 -11.13731 -11.13068 -10.84603 -9.66478 -9.45741 -9.21406 -9.15006 -6.56014 0.81234 0.87085 1.35704 1.55303 1.75517 2.16981 2.57991 3.03978 3.57757 3.82797 3.90201 3.96409 4.08150 4.22744 4.27656 4.41362 4.48703 4.53868 4.56543 4.67028 4.67829 4.73637 4.80844 4.84543 4.87942 4.95833 4.99078 5.04930 5.13927 5.22161 5.25768 5.32996 5.39591 5.44925 5.54350 5.55831 5.84535 5.85403 6.03255 6.09037 6.17802 6.29255 6.46052 6.69574 6.85735 7.97620 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028014 B = 0.005282 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.265125 B = 5299.506838 C = 5641.873085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.051 3.949 7 N -0.537 5.537 8 C 0.106 3.894 9 C -0.044 4.044 10 C -0.208 4.208 11 C -0.083 4.083 12 C -0.255 4.255 13 C 0.074 3.926 14 C -0.558 4.558 15 H 0.041 0.959 16 C 0.015 3.985 17 N -0.844 5.844 18 Si 1.105 2.895 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.279 1.279 22 C -0.216 4.216 23 C 0.060 3.940 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.022 0.978 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.029 0.971 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.277 0.723 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.687 7.744 2.128 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.077 4.077 7 N -0.261 5.261 8 C -0.022 4.022 9 C -0.044 4.044 10 C -0.227 4.227 11 C -0.101 4.101 12 C -0.274 4.274 13 C 0.072 3.928 14 C -0.588 4.588 15 H 0.059 0.941 16 C -0.199 4.199 17 N -0.468 5.468 18 Si 0.926 3.074 19 H -0.184 1.184 20 H -0.189 1.189 21 H -0.205 1.205 22 C -0.236 4.236 23 C -0.068 4.068 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.047 0.953 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -16.319 9.130 2.658 18.887 hybrid contribution -0.756 -2.965 -0.633 3.125 sum -17.075 6.164 2.024 18.266 Atomic orbital electron populations 1.21742 0.93265 1.02084 1.02577 1.21154 0.96245 0.99648 0.93501 0.91037 1.21628 0.94070 1.00643 0.98382 1.21563 0.97045 1.00880 0.95731 1.22123 0.99870 0.94435 0.91247 1.61888 1.08588 1.54164 1.01434 1.20950 0.91108 0.97101 0.92992 1.19585 0.94417 0.94138 0.96297 1.20679 0.94540 0.98712 1.08812 1.21013 0.93750 0.97887 0.97438 1.21160 0.98405 0.98652 1.09177 1.17869 0.92748 0.92075 0.90144 1.20537 1.01880 0.95181 1.41215 0.94053 1.28256 0.90701 1.10132 0.90802 1.70603 1.33179 1.05131 1.37901 0.83193 0.77280 0.69495 0.77449 1.18419 1.18949 1.20520 1.20920 0.92828 1.00708 1.09189 1.22247 0.85893 0.98986 0.99643 0.92650 0.91536 0.91914 0.90408 0.92235 0.91989 0.91249 0.95931 0.92546 0.88648 0.95320 0.85624 0.85324 0.88472 0.91273 0.89837 0.89864 0.95298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.20 71.98 0.66 -1.34 16 2 C -0.09 -1.70 2.88 -10.74 -0.03 -1.73 16 3 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.11 -2.23 5.29 30.68 0.16 -2.07 16 5 C -0.11 -2.99 6.09 30.64 0.19 -2.81 16 6 C 0.05 1.65 5.15 86.32 0.44 2.09 16 7 N -0.54 -16.19 4.65 -900.93 -4.19 -20.37 16 8 C 0.11 3.42 5.11 85.56 0.44 3.86 16 9 C -0.04 -1.78 4.89 -19.91 -0.10 -1.88 16 10 C -0.21 -8.13 9.70 22.46 0.22 -7.91 16 11 C -0.08 -3.44 10.02 22.22 0.22 -3.22 16 12 C -0.25 -12.40 7.35 22.73 0.17 -12.23 16 13 C 0.07 3.93 5.15 -21.29 -0.11 3.82 16 14 C -0.56 -32.35 9.40 23.46 0.22 -32.13 16 15 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 16 C 0.01 0.81 5.34 85.26 0.46 1.27 16 17 N -0.84 -48.24 13.65 21.83 0.30 -47.94 16 18 Si 1.10 50.71 24.98 68.60 1.71 52.42 16 19 H -0.26 -10.98 6.68 99.48 0.66 -10.31 16 20 H -0.26 -12.15 6.99 99.48 0.70 -11.46 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 22 C -0.22 -10.37 7.60 22.73 0.17 -10.20 16 23 C 0.06 1.37 4.74 86.33 0.41 1.78 16 24 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 2.23 5.74 -2.39 -0.01 2.22 16 33 H 0.10 2.65 7.93 -2.39 -0.02 2.63 16 34 H 0.03 0.94 8.06 -2.39 -0.02 0.92 16 35 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 36 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.10 4.72 4.67 -2.92 -0.01 4.71 16 38 H 0.28 15.69 8.73 -92.71 -0.81 14.88 16 39 H 0.08 4.02 7.95 -2.91 -0.02 4.00 16 40 H 0.08 1.71 8.01 -2.39 -0.02 1.69 16 41 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -60.82 318.68 2.23 -58.59 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.89 Total: 19.99 kcal Atomic # 6 Polarization: -66.22 SS G_CDS: 3.52 Total: -62.70 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -3.89 Total: -68.31 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 1.71 Total: 52.42 kcal Total: -60.82 2.23 -58.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.311 kcal (2) G-P(sol) polarization free energy of solvation -60.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds