Wall clock time and date at job start Mon Mar 30 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00109 * 2 1 4 4 C 1.53004 * 109.46689 * 293.95181 * 3 2 1 5 5 C 1.53771 * 113.61614 * 274.13582 * 4 3 2 6 6 C 1.53957 * 87.02180 * 220.04857 * 5 4 3 7 7 C 1.53784 * 87.11044 * 25.36460 * 6 5 4 8 8 C 1.46903 * 110.99828 * 123.95406 * 2 1 3 9 9 H 1.09001 * 109.47235 * 290.02107 * 8 2 1 10 10 C 1.50696 * 109.47665 * 50.02595 * 8 2 1 11 11 H 1.08009 * 119.99856 * 62.09656 * 10 8 2 12 12 C 1.37875 * 120.00256 * 242.10250 * 10 8 2 13 13 N 1.31514 * 120.00050 * 179.69788 * 12 10 8 14 14 Si 1.86801 * 119.99925 * 359.70087 * 12 10 8 15 15 H 1.48497 * 109.46995 * 84.57343 * 14 12 10 16 16 H 1.48497 * 109.47072 * 204.57636 * 14 12 10 17 17 H 1.48508 * 109.46617 * 324.57380 * 14 12 10 18 18 C 1.50708 * 109.46683 * 170.02765 * 8 2 1 19 19 C 1.38226 * 120.00088 * 313.20047 * 18 8 2 20 20 C 1.38235 * 119.99918 * 179.79550 * 19 18 8 21 21 C 1.38235 * 120.00010 * 0.43436 * 20 19 18 22 22 C 1.38235 * 119.99951 * 359.81526 * 21 20 19 23 23 C 1.38235 * 119.99363 * 133.47747 * 18 8 2 24 24 H 1.08994 * 109.46886 * 292.24581 * 1 2 3 25 25 H 1.08996 * 109.47272 * 52.25621 * 1 2 3 26 26 H 1.09010 * 109.47100 * 172.25244 * 1 2 3 27 27 H 1.08997 * 109.46970 * 53.95278 * 3 2 1 28 28 H 1.08997 * 109.47316 * 173.95405 * 3 2 1 29 29 H 1.09004 * 112.84884 * 45.33269 * 4 3 2 30 30 H 1.09005 * 113.61737 * 334.57172 * 5 4 3 31 31 H 1.09004 * 113.61999 * 105.47213 * 5 4 3 32 32 H 1.08994 * 113.53670 * 270.81159 * 6 5 4 33 33 H 1.08998 * 113.66605 * 139.92618 * 6 5 4 34 34 H 1.08997 * 113.61709 * 220.09633 * 7 6 5 35 35 H 1.08992 * 113.69399 * 89.19438 * 7 6 5 36 36 H 0.97006 * 120.00003 * 179.97438 * 13 12 10 37 37 H 1.07997 * 120.00177 * 359.97438 * 19 18 8 38 38 H 1.08003 * 120.00138 * 180.27138 * 20 19 18 39 39 H 1.07996 * 120.00254 * 179.83675 * 21 20 19 40 40 H 1.08004 * 119.99977 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00528 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 -1.3184 5 6 2.6367 1.7887 -2.4506 6 6 2.4613 3.2657 -2.8480 7 6 2.0650 3.5313 -1.3861 8 6 1.9954 -0.7660 1.1376 9 1 1.7971 -0.2250 2.0629 10 6 1.3233 -2.1138 1.1899 11 1 1.4385 -2.8068 0.3695 12 6 0.5613 -2.4622 2.2849 13 7 -0.0300 -3.6361 2.3278 14 14 0.3689 -1.2668 3.7074 15 1 -0.7331 -0.3169 3.4100 16 1 0.0522 -2.0199 4.9474 17 1 1.6348 -0.5133 3.8954 18 6 3.4819 -0.9519 0.9732 19 6 3.9968 -1.3628 -0.2420 20 6 5.3606 -1.5293 -0.3941 21 6 6.2088 -1.2934 0.6717 22 6 5.6934 -0.8875 1.8885 23 6 4.3298 -0.7170 2.0393 24 1 -0.3633 0.3890 0.9511 25 1 -0.3633 0.6290 -0.8126 26 1 -0.3634 -1.0184 -0.1386 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3444 0.1082 29 1 0.5934 1.8937 -1.6081 30 1 3.6391 1.5478 -2.0966 31 1 2.2720 1.0874 -3.2011 32 1 1.6507 3.4323 -3.5573 33 1 3.3906 3.7526 -3.1437 34 1 1.2393 4.2346 -1.2783 35 1 2.9098 3.7680 -0.7393 36 1 -0.5658 -3.8814 3.0984 37 1 3.3338 -1.5511 -1.0735 38 1 5.7633 -1.8461 -1.3448 39 1 7.2740 -1.4260 0.5537 40 1 6.3560 -0.7036 2.7213 41 1 3.9272 -0.3998 2.9899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061457932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:39 Heat of formation + Delta-G solvation = 47.060538 kcal Electronic energy + Delta-G solvation = -19962.052604 eV Core-core repulsion = 17228.301726 eV Total energy + Delta-G solvation = -2733.750878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.13208 -38.30275 -36.01936 -32.57170 -30.97408 -30.14632 -28.31717 -26.57460 -25.37386 -24.87756 -22.41134 -21.89206 -21.12730 -19.29296 -19.04034 -17.06589 -16.17008 -15.49687 -15.01887 -14.75978 -14.37405 -14.01971 -13.84344 -13.58668 -12.88383 -12.77065 -12.67866 -12.26885 -12.20948 -12.02258 -11.76135 -11.51358 -11.24039 -10.99751 -10.73231 -10.72305 -10.46602 -10.14040 -10.01727 -9.90319 -9.84897 -9.77692 -9.40379 -8.70186 -8.19686 -7.81840 -7.24877 -6.21076 -4.19491 2.11949 2.17699 3.17032 3.24798 3.26674 4.27483 4.49193 4.72259 4.88528 4.97398 5.05005 5.18417 5.34309 5.54108 5.61161 5.72971 5.75705 5.76541 5.96989 5.97021 5.99179 6.03426 6.08324 6.22858 6.28476 6.29496 6.36540 6.38763 6.43178 6.53941 6.65218 6.74747 6.83264 6.84889 7.05370 7.16708 7.26571 7.38800 7.54313 7.78557 8.08193 8.14129 8.54534 8.89714 9.40715 10.91077 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.009021 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.096605 B = 3103.047121 C = 4287.097671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.531 5.531 3 C 0.059 3.941 4 C -0.102 4.102 5 C -0.123 4.123 6 C -0.145 4.145 7 C -0.140 4.140 8 C 0.206 3.794 9 H 0.017 0.983 10 C -0.490 4.490 11 H 0.083 0.917 12 C 0.078 3.922 13 N -0.888 5.888 14 Si 0.868 3.132 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.266 1.266 18 C -0.026 4.026 19 C -0.090 4.090 20 C -0.130 4.130 21 C -0.148 4.148 22 C -0.126 4.126 23 C -0.135 4.135 24 H 0.007 0.993 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.017 0.983 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.266 0.734 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.259 10.811 -5.456 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.255 5.255 3 C -0.069 4.069 4 C -0.121 4.121 5 C -0.160 4.160 6 C -0.183 4.183 7 C -0.178 4.178 8 C 0.101 3.899 9 H 0.035 0.965 10 C -0.528 4.528 11 H 0.101 0.899 12 C -0.126 4.126 13 N -0.525 5.525 14 Si 0.696 3.304 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.191 1.191 18 C -0.027 4.027 19 C -0.108 4.108 20 C -0.148 4.148 21 C -0.166 4.166 22 C -0.144 4.144 23 C -0.154 4.154 24 H 0.026 0.974 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.035 0.965 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.275 10.439 -5.761 13.474 hybrid contribution -0.427 0.868 1.760 2.008 sum 5.848 11.307 -4.001 13.344 Atomic orbital electron populations 1.22146 0.88132 1.02814 0.97548 1.62288 1.07418 1.10178 1.45606 1.22106 0.99810 0.90265 0.94753 1.22564 0.99649 0.93982 0.95888 1.22836 0.99713 0.95272 0.98173 1.22860 1.00921 0.97931 0.96540 1.22938 1.00898 0.97066 0.96871 1.18873 0.88183 0.94646 0.88236 0.96531 1.20774 1.28414 0.98279 1.05365 0.89886 1.25056 0.94853 0.94961 0.97756 1.69869 1.31942 1.20181 1.30467 0.87027 0.78896 0.81651 0.82849 1.20012 1.21233 1.19104 1.20248 0.96205 0.93711 0.92517 1.20961 0.93998 0.97970 0.97916 1.21076 0.94135 1.01424 0.98183 1.20859 0.98701 1.03219 0.93851 1.20909 0.95079 1.01365 0.97080 1.21017 0.93244 1.02384 0.98720 0.97444 0.93621 0.89716 0.96465 0.91392 0.89292 0.90308 0.91708 0.90728 0.92090 0.92168 0.90496 0.92361 0.85742 0.87259 0.87480 0.87381 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 8.94 60.06 0.54 1.38 16 2 N -0.53 -10.80 4.13 -237.69 -0.98 -11.78 16 3 C 0.06 1.04 4.65 -3.82 -0.02 1.02 16 4 C -0.10 -1.49 3.69 -89.81 -0.33 -1.82 16 5 C -0.12 -1.66 7.65 -25.83 -0.20 -1.86 16 6 C -0.15 -1.66 8.09 -25.82 -0.21 -1.87 16 7 C -0.14 -1.73 7.65 -25.91 -0.20 -1.92 16 8 C 0.21 4.74 1.65 -70.01 -0.12 4.62 16 9 H 0.02 0.41 4.31 -51.93 -0.22 0.19 16 10 C -0.49 -13.09 7.14 -34.44 -0.25 -13.34 16 11 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 12 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 13 N -0.89 -26.05 13.96 55.43 0.77 -25.27 16 14 Si 0.87 21.01 27.17 -169.99 -4.62 16.39 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.22 6.46 56.52 0.37 -5.86 16 18 C -0.03 -0.55 3.57 -104.62 -0.37 -0.92 16 19 C -0.09 -1.78 9.26 -39.59 -0.37 -2.14 16 20 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 21 C -0.15 -2.42 10.05 -39.58 -0.40 -2.82 16 22 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 23 C -0.13 -2.70 9.67 -39.58 -0.38 -3.08 16 24 H 0.01 0.15 8.13 -51.93 -0.42 -0.27 16 25 H 0.05 0.78 6.05 -51.93 -0.31 0.47 16 26 H 0.08 1.90 7.01 -51.92 -0.36 1.54 16 27 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 28 H 0.07 1.22 6.74 -51.93 -0.35 0.87 16 29 H 0.09 1.32 6.18 -51.93 -0.32 1.00 16 30 H 0.08 1.12 7.92 -51.93 -0.41 0.70 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.12 2.51 7.93 -52.49 -0.42 2.09 16 38 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.11 2.15 7.99 -52.49 -0.42 1.73 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -27.98 325.08 -9.76 -37.73 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.64 Total: 3.96 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -3.19 Total: -25.92 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.21 Total: -37.06 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.62 Total: 16.39 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.98 -9.76 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061457932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.795 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds