Wall clock time and date at job start Mon Mar 30 2020 06:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00109 * 2 1 4 4 C 1.53004 * 109.46689 * 293.95181 * 3 2 1 5 5 C 1.53771 * 113.61614 * 274.13582 * 4 3 2 6 6 C 1.53957 * 87.02180 * 220.04857 * 5 4 3 7 7 C 1.53784 * 87.11044 * 25.36460 * 6 5 4 8 8 C 1.46903 * 110.99828 * 123.95406 * 2 1 3 9 9 H 1.09001 * 109.47235 * 290.02107 * 8 2 1 10 10 C 1.50696 * 109.47665 * 50.02595 * 8 2 1 11 11 H 1.08009 * 119.99856 * 62.09656 * 10 8 2 12 12 C 1.37875 * 120.00256 * 242.10250 * 10 8 2 13 13 N 1.31514 * 120.00050 * 179.69788 * 12 10 8 14 14 Si 1.86801 * 119.99925 * 359.70087 * 12 10 8 15 15 H 1.48497 * 109.46995 * 84.57343 * 14 12 10 16 16 H 1.48497 * 109.47072 * 204.57636 * 14 12 10 17 17 H 1.48508 * 109.46617 * 324.57380 * 14 12 10 18 18 C 1.50708 * 109.46683 * 170.02765 * 8 2 1 19 19 C 1.38226 * 120.00088 * 313.20047 * 18 8 2 20 20 C 1.38235 * 119.99918 * 179.79550 * 19 18 8 21 21 C 1.38235 * 120.00010 * 0.43436 * 20 19 18 22 22 C 1.38235 * 119.99951 * 359.81526 * 21 20 19 23 23 C 1.38235 * 119.99363 * 133.47747 * 18 8 2 24 24 H 1.08994 * 109.46886 * 292.24581 * 1 2 3 25 25 H 1.08996 * 109.47272 * 52.25621 * 1 2 3 26 26 H 1.09010 * 109.47100 * 172.25244 * 1 2 3 27 27 H 1.08997 * 109.46970 * 53.95278 * 3 2 1 28 28 H 1.08997 * 109.47316 * 173.95405 * 3 2 1 29 29 H 1.09004 * 112.84884 * 45.33269 * 4 3 2 30 30 H 1.09005 * 113.61737 * 334.57172 * 5 4 3 31 31 H 1.09004 * 113.61999 * 105.47213 * 5 4 3 32 32 H 1.08994 * 113.53670 * 270.81159 * 6 5 4 33 33 H 1.08998 * 113.66605 * 139.92618 * 6 5 4 34 34 H 1.08997 * 113.61709 * 220.09633 * 7 6 5 35 35 H 1.08992 * 113.69399 * 89.19438 * 7 6 5 36 36 H 0.97006 * 120.00003 * 179.97438 * 13 12 10 37 37 H 1.07997 * 120.00177 * 359.97438 * 19 18 8 38 38 H 1.08003 * 120.00138 * 180.27138 * 20 19 18 39 39 H 1.07996 * 120.00254 * 179.83675 * 21 20 19 40 40 H 1.08004 * 119.99977 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00528 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 -1.3184 5 6 2.6367 1.7887 -2.4506 6 6 2.4613 3.2657 -2.8480 7 6 2.0650 3.5313 -1.3861 8 6 1.9954 -0.7660 1.1376 9 1 1.7971 -0.2250 2.0629 10 6 1.3233 -2.1138 1.1899 11 1 1.4385 -2.8068 0.3695 12 6 0.5613 -2.4622 2.2849 13 7 -0.0300 -3.6361 2.3278 14 14 0.3689 -1.2668 3.7074 15 1 -0.7331 -0.3169 3.4100 16 1 0.0522 -2.0199 4.9474 17 1 1.6348 -0.5133 3.8954 18 6 3.4819 -0.9519 0.9732 19 6 3.9968 -1.3628 -0.2420 20 6 5.3606 -1.5293 -0.3941 21 6 6.2088 -1.2934 0.6717 22 6 5.6934 -0.8875 1.8885 23 6 4.3298 -0.7170 2.0393 24 1 -0.3633 0.3890 0.9511 25 1 -0.3633 0.6290 -0.8126 26 1 -0.3634 -1.0184 -0.1386 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3444 0.1082 29 1 0.5934 1.8937 -1.6081 30 1 3.6391 1.5478 -2.0966 31 1 2.2720 1.0874 -3.2011 32 1 1.6507 3.4323 -3.5573 33 1 3.3906 3.7526 -3.1437 34 1 1.2393 4.2346 -1.2783 35 1 2.9098 3.7680 -0.7393 36 1 -0.5658 -3.8814 3.0984 37 1 3.3338 -1.5511 -1.0735 38 1 5.7633 -1.8461 -1.3448 39 1 7.2740 -1.4260 0.5537 40 1 6.3560 -0.7036 2.7213 41 1 3.9272 -0.3998 2.9899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061457932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:38 Heat of formation + Delta-G solvation = 32.377779 kcal Electronic energy + Delta-G solvation = -19962.689296 eV Core-core repulsion = 17228.301726 eV Total energy + Delta-G solvation = -2734.387571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54548 -39.55188 -37.56424 -34.59291 -32.56647 -31.58107 -29.85667 -28.24650 -26.60132 -26.30962 -23.97655 -23.32672 -22.50673 -20.94789 -20.15445 -19.10701 -17.62982 -16.83705 -16.61921 -16.15688 -15.97912 -15.47693 -15.25970 -15.04633 -14.78417 -14.29905 -14.13359 -13.81143 -13.61950 -13.25480 -13.21213 -12.93707 -12.87663 -12.60171 -12.33682 -12.07377 -11.97625 -11.82242 -11.59209 -11.45027 -11.23100 -10.99210 -10.93469 -10.77404 -9.63579 -9.33706 -8.92862 -8.35387 -6.36578 0.66497 0.73158 1.22438 1.24434 1.32321 2.23398 2.86013 3.17759 3.37154 3.83276 3.90281 3.96120 4.10471 4.18062 4.28164 4.36016 4.44712 4.52139 4.56767 4.62427 4.64731 4.79382 4.86926 4.89713 4.93328 4.96728 4.99296 5.07783 5.14783 5.21558 5.25458 5.33830 5.38911 5.45366 5.50054 5.71549 5.74429 5.79330 6.01184 6.13358 6.31653 6.43314 6.65157 6.76174 7.27082 8.81016 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.009021 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.096605 B = 3103.047121 C = 4287.097671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.533 5.533 3 C 0.065 3.935 4 C -0.108 4.108 5 C -0.125 4.125 6 C -0.131 4.131 7 C -0.132 4.132 8 C 0.213 3.787 9 H 0.005 0.995 10 C -0.482 4.482 11 H 0.038 0.962 12 C 0.027 3.973 13 N -0.937 5.937 14 Si 0.922 3.078 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.253 1.253 18 C -0.054 4.054 19 C -0.105 4.105 20 C -0.127 4.127 21 C -0.137 4.137 22 C -0.122 4.122 23 C -0.155 4.155 24 H -0.002 1.002 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.012 0.988 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.267 0.733 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.546 13.166 -5.863 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.257 5.257 3 C -0.063 4.063 4 C -0.127 4.127 5 C -0.163 4.163 6 C -0.168 4.168 7 C -0.170 4.170 8 C 0.107 3.893 9 H 0.023 0.977 10 C -0.521 4.521 11 H 0.057 0.943 12 C -0.172 4.172 13 N -0.577 5.577 14 Si 0.747 3.253 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.178 1.178 18 C -0.055 4.055 19 C -0.124 4.124 20 C -0.144 4.144 21 C -0.155 4.155 22 C -0.140 4.140 23 C -0.173 4.173 24 H 0.016 0.984 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.576 12.817 -6.183 16.615 hybrid contribution -1.027 0.112 1.774 2.053 sum 7.549 12.929 -4.409 15.608 Atomic orbital electron populations 1.22073 0.88250 1.01432 0.98267 1.62167 1.07315 1.12085 1.44177 1.22129 0.99277 0.88400 0.96471 1.22600 0.99836 0.95802 0.94452 1.22826 0.98827 0.97009 0.97626 1.22806 1.02055 0.95774 0.96162 1.22913 1.01326 0.95214 0.97571 1.18677 0.89548 0.92585 0.88531 0.97745 1.20828 1.28278 0.99299 1.03718 0.94332 1.25726 0.94781 0.96390 1.00303 1.70003 1.33783 1.22325 1.31545 0.86145 0.79487 0.79835 0.79807 1.19227 1.20931 1.17784 1.20146 0.95220 0.96149 0.93988 1.20914 0.95394 0.99059 0.96991 1.21406 0.92891 1.00175 0.99975 1.21333 1.00620 1.00825 0.92751 1.21281 0.94136 0.99939 0.98651 1.21138 0.94713 1.03442 0.98043 0.98395 0.90413 0.92915 0.96984 0.91832 0.89509 0.91084 0.92261 0.89523 0.90607 0.90902 0.90302 0.92372 0.87408 0.84343 0.83432 0.84153 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.98 8.94 127.69 1.14 3.13 16 2 N -0.53 -22.21 4.13 -905.91 -3.74 -25.95 16 3 C 0.07 2.26 4.65 86.30 0.40 2.66 16 4 C -0.11 -3.01 3.69 -10.27 -0.04 -3.04 16 5 C -0.13 -3.20 7.65 31.18 0.24 -2.96 16 6 C -0.13 -2.59 8.09 31.18 0.25 -2.34 16 7 C -0.13 -2.91 7.65 31.12 0.24 -2.67 16 8 C 0.21 10.07 1.65 43.42 0.07 10.14 16 9 H 0.01 0.25 4.31 -2.39 -0.01 0.24 16 10 C -0.48 -27.17 7.14 25.60 0.18 -26.99 16 11 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16 12 C 0.03 1.55 5.47 84.65 0.46 2.01 16 13 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 14 Si 0.92 44.34 27.17 68.60 1.86 46.21 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 17 H -0.25 -11.56 6.46 99.48 0.64 -10.92 16 18 C -0.05 -2.33 3.57 -19.87 -0.07 -2.40 16 19 C -0.11 -4.15 9.26 22.27 0.21 -3.94 16 20 C -0.13 -4.03 10.05 22.27 0.22 -3.80 16 21 C -0.14 -3.94 10.05 22.27 0.22 -3.72 16 22 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 23 C -0.15 -6.04 9.67 22.27 0.22 -5.82 16 24 H 0.00 -0.11 8.13 -2.39 -0.02 -0.13 16 25 H 0.08 2.66 6.05 -2.39 -0.01 2.65 16 26 H 0.05 2.50 7.01 -2.38 -0.02 2.48 16 27 H 0.01 0.43 8.12 -2.39 -0.02 0.41 16 28 H 0.06 2.26 6.74 -2.39 -0.02 2.25 16 29 H 0.09 2.45 6.18 -2.38 -0.01 2.43 16 30 H 0.07 1.92 7.92 -2.38 -0.02 1.90 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 36 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 37 H 0.11 4.51 7.93 -2.91 -0.02 4.49 16 38 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.10 4.02 7.99 -2.91 -0.02 4.00 16 Total: -1.00 -63.73 325.08 3.31 -60.42 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.92 Total: 20.02 kcal Atomic # 6 Polarization: -47.33 SS G_CDS: 3.97 Total: -43.35 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -3.45 Total: -83.29 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.86 Total: 46.21 kcal Total: -63.73 3.31 -60.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061457932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.796 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds