Wall clock time and date at job start Mon Mar 30 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46896 * 111.00275 * 2 1 4 4 C 1.52999 * 109.47468 * 293.95545 * 3 2 1 5 5 C 1.53783 * 113.61249 * 274.13740 * 4 3 2 6 6 C 1.53960 * 87.01678 * 220.04083 * 5 4 3 7 7 C 1.53778 * 87.10949 * 25.36617 * 6 5 4 8 8 C 1.46897 * 111.00196 * 123.95662 * 2 1 3 9 9 H 1.09004 * 109.46721 * 296.04592 * 8 2 1 10 10 C 1.50693 * 109.47502 * 176.04620 * 8 2 1 11 11 H 1.07999 * 120.00046 * 324.89925 * 10 8 2 12 12 C 1.37883 * 120.00368 * 144.89947 * 10 8 2 13 13 N 1.31514 * 119.99566 * 5.11768 * 12 10 8 14 14 Si 1.86801 * 120.00261 * 185.11588 * 12 10 8 15 15 H 1.48502 * 109.46906 * 90.00035 * 14 12 10 16 16 H 1.48498 * 109.47178 * 210.00059 * 14 12 10 17 17 H 1.48494 * 109.46960 * 329.99969 * 14 12 10 18 18 C 1.50703 * 109.47262 * 56.04118 * 8 2 1 19 19 C 1.38234 * 119.99518 * 46.29590 * 18 8 2 20 20 C 1.38236 * 119.99845 * 179.79090 * 19 18 8 21 21 C 1.38236 * 119.99945 * 0.43764 * 20 19 18 22 22 C 1.38232 * 119.99814 * 359.81185 * 21 20 19 23 23 C 1.38229 * 120.00239 * 226.56627 * 18 8 2 24 24 H 1.09001 * 109.47049 * 59.99811 * 1 2 3 25 25 H 1.08998 * 109.47181 * 300.00272 * 1 2 3 26 26 H 1.09005 * 109.47559 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47371 * 53.95251 * 3 2 1 28 28 H 1.09003 * 109.47512 * 173.95441 * 3 2 1 29 29 H 1.09003 * 112.84820 * 45.32411 * 4 3 2 30 30 H 1.08994 * 113.61326 * 334.56373 * 5 4 3 31 31 H 1.09006 * 113.61698 * 105.46931 * 5 4 3 32 32 H 1.08994 * 113.53904 * 270.80655 * 6 5 4 33 33 H 1.09001 * 113.66013 * 139.93111 * 6 5 4 34 34 H 1.09000 * 113.61119 * 220.08936 * 7 6 5 35 35 H 1.08997 * 113.69699 * 89.19358 * 7 6 5 36 36 H 0.97001 * 119.99896 * 179.97438 * 13 12 10 37 37 H 1.08000 * 120.00117 * 359.97438 * 19 18 8 38 38 H 1.08005 * 119.99956 * 180.27804 * 20 19 18 39 39 H 1.08003 * 120.00005 * 179.84058 * 21 20 19 40 40 H 1.08005 * 119.99893 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.00114 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.6368 1.7888 -2.4505 6 6 2.4613 3.2659 -2.8479 7 6 2.0651 3.5313 -1.3859 8 6 1.9954 -0.7660 1.1375 9 1 1.7043 -0.2799 2.0687 10 6 3.4986 -0.8255 1.0505 11 1 3.9817 -0.8867 0.0865 12 6 4.2574 -0.8018 2.2015 13 7 3.6691 -0.8289 3.3775 14 14 6.1208 -0.7312 2.0907 15 1 6.5618 0.6866 2.0672 16 1 6.7130 -1.4144 3.2687 17 1 6.5687 -1.4096 0.8481 18 6 1.4345 -2.1644 1.1042 19 6 1.4242 -2.8768 -0.0804 20 6 0.9136 -4.1611 -0.1101 21 6 0.4052 -4.7296 1.0429 22 6 0.4109 -4.0152 2.2263 23 6 0.9253 -2.7325 2.2569 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.5611 1.9274 0.8309 28 1 3.0797 1.3444 0.1082 29 1 0.5935 1.8939 -1.6080 30 1 3.6391 1.5480 -2.0965 31 1 2.2720 1.0876 -3.2011 32 1 1.6508 3.4325 -3.5572 33 1 3.3907 3.7527 -3.1436 34 1 1.2395 4.2347 -1.2782 35 1 2.9099 3.7680 -0.7391 36 1 4.2029 -0.8126 4.1873 37 1 1.8176 -2.4311 -0.9820 38 1 0.9097 -4.7194 -1.0346 39 1 0.0040 -5.7320 1.0191 40 1 0.0140 -4.4595 3.1271 41 1 0.9298 -2.1744 3.1815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061457935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:42 Heat of formation + Delta-G solvation = 43.280089 kcal Electronic energy + Delta-G solvation = -19780.592693 eV Core-core repulsion = 17046.677882 eV Total energy + Delta-G solvation = -2733.914811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.88658 -38.19096 -35.77841 -32.66558 -30.55766 -29.91704 -27.55981 -27.16373 -25.20589 -24.20883 -22.91721 -21.61533 -20.80394 -19.35126 -18.86852 -16.54455 -15.85171 -15.45979 -14.89069 -14.57192 -14.14577 -13.90593 -13.83333 -13.44306 -12.85699 -12.49452 -12.20601 -12.12352 -12.04644 -11.93390 -11.54005 -11.37792 -11.03144 -10.98472 -10.78375 -10.51863 -10.35771 -10.15337 -9.97570 -9.82591 -9.65556 -9.59075 -9.32801 -8.57569 -7.97070 -7.59221 -7.14309 -6.11882 -4.14601 2.36387 2.39100 3.25891 3.33238 3.36911 4.34366 4.70783 4.93172 5.03192 5.12841 5.20762 5.23876 5.50473 5.71241 5.82923 5.88838 5.90751 5.93158 6.10735 6.11464 6.15158 6.16315 6.24170 6.33897 6.37346 6.48544 6.51859 6.58530 6.61087 6.74773 6.77275 6.94308 7.00195 7.14365 7.31752 7.39112 7.47747 7.79009 7.81172 7.88670 8.11410 8.23352 8.55553 8.97876 9.48966 10.94607 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.008449 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.249399 B = 3313.137160 C = 4657.919953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.534 5.534 3 C 0.079 3.921 4 C -0.104 4.104 5 C -0.123 4.123 6 C -0.146 4.146 7 C -0.138 4.138 8 C 0.234 3.766 9 H 0.036 0.964 10 C -0.494 4.494 11 H 0.065 0.935 12 C 0.065 3.935 13 N -0.884 5.884 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.272 1.272 18 C -0.020 4.020 19 C -0.104 4.104 20 C -0.137 4.137 21 C -0.154 4.154 22 C -0.132 4.132 23 C -0.114 4.114 24 H 0.051 0.949 25 H 0.009 0.991 26 H 0.061 0.939 27 H 0.016 0.984 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.263 0.737 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 2.451 -6.802 8.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.258 5.258 3 C -0.049 4.049 4 C -0.123 4.123 5 C -0.160 4.160 6 C -0.184 4.184 7 C -0.176 4.176 8 C 0.128 3.872 9 H 0.054 0.946 10 C -0.532 4.532 11 H 0.083 0.917 12 C -0.139 4.139 13 N -0.522 5.522 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.196 1.196 18 C -0.021 4.021 19 C -0.122 4.122 20 C -0.155 4.155 21 C -0.172 4.172 22 C -0.150 4.150 23 C -0.133 4.133 24 H 0.070 0.930 25 H 0.028 0.972 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.792 2.221 -7.019 8.784 hybrid contribution 0.767 0.235 0.938 1.234 sum -4.025 2.456 -6.081 7.695 Atomic orbital electron populations 1.22368 0.90642 1.00992 0.98618 1.62070 1.04675 1.12742 1.46350 1.21894 1.01733 0.87909 0.93394 1.22577 0.99007 0.94178 0.96519 1.22846 1.00144 0.94949 0.98058 1.22872 1.00773 0.98132 0.96608 1.22919 1.00971 0.97006 0.96738 1.18473 0.94252 0.86095 0.88378 0.94594 1.20931 0.89262 1.50168 0.92882 0.91687 1.25007 0.98838 0.94609 0.95411 1.69933 1.35616 1.49255 0.97355 0.86552 0.85337 0.78160 0.77805 1.20569 1.21281 1.19649 1.20448 0.91016 0.98798 0.91872 1.20968 0.99134 0.93461 0.98654 1.20992 1.01078 0.96029 0.97386 1.20795 1.03608 0.99200 0.93615 1.20952 1.01588 0.95345 0.97101 1.21074 0.98408 0.95182 0.98635 0.93024 0.97203 0.92072 0.96552 0.89248 0.90019 0.89971 0.92077 0.90973 0.92146 0.92370 0.90215 0.92763 0.86293 0.87735 0.87903 0.87734 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.01 60.06 0.54 0.96 16 2 N -0.53 -11.05 4.15 -237.70 -0.99 -12.04 16 3 C 0.08 1.53 4.62 -3.83 -0.02 1.51 16 4 C -0.10 -1.63 3.69 -89.81 -0.33 -1.96 16 5 C -0.12 -1.82 7.65 -25.82 -0.20 -2.02 16 6 C -0.15 -1.84 8.09 -25.83 -0.21 -2.05 16 7 C -0.14 -1.89 7.65 -25.92 -0.20 -2.08 16 8 C 0.23 5.60 1.75 -70.02 -0.12 5.47 16 9 H 0.04 0.98 7.17 -51.93 -0.37 0.61 16 10 C -0.49 -12.86 6.86 -34.44 -0.24 -13.10 16 11 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 12 C 0.06 1.73 5.45 -17.82 -0.10 1.63 16 13 N -0.88 -24.42 12.84 55.43 0.71 -23.71 16 14 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 C -0.02 -0.46 3.50 -104.63 -0.37 -0.82 16 19 C -0.10 -2.18 8.46 -39.58 -0.33 -2.51 16 20 C -0.14 -2.54 10.05 -39.58 -0.40 -2.94 16 21 C -0.15 -2.77 10.05 -39.58 -0.40 -3.17 16 22 C -0.13 -2.53 10.05 -39.58 -0.40 -2.93 16 23 C -0.11 -2.52 9.67 -39.59 -0.38 -2.91 16 24 H 0.05 0.84 6.30 -51.93 -0.33 0.51 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.06 1.15 6.29 -51.93 -0.33 0.83 16 27 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 28 H 0.09 1.92 6.50 -51.93 -0.34 1.59 16 29 H 0.08 1.26 6.29 -51.93 -0.33 0.93 16 30 H 0.08 1.32 7.92 -51.93 -0.41 0.90 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.12 2.50 7.91 -52.49 -0.42 2.08 16 38 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 41 H 0.12 2.68 7.99 -52.49 -0.42 2.26 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -26.82 327.99 -10.20 -37.03 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.71 Total: 4.87 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -3.14 Total: -26.92 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.27 Total: -35.75 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.82 -10.20 -37.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061457935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.307 kcal (2) G-P(sol) polarization free energy of solvation -26.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds