Wall clock time and date at job start Mon Mar 30 2020 06:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46896 * 111.00275 * 2 1 4 4 C 1.52999 * 109.47468 * 293.95545 * 3 2 1 5 5 C 1.53783 * 113.61249 * 274.13740 * 4 3 2 6 6 C 1.53960 * 87.01678 * 220.04083 * 5 4 3 7 7 C 1.53778 * 87.10949 * 25.36617 * 6 5 4 8 8 C 1.46897 * 111.00196 * 123.95662 * 2 1 3 9 9 H 1.09004 * 109.46721 * 296.04592 * 8 2 1 10 10 C 1.50693 * 109.47502 * 176.04620 * 8 2 1 11 11 H 1.07999 * 120.00046 * 324.89925 * 10 8 2 12 12 C 1.37883 * 120.00368 * 144.89947 * 10 8 2 13 13 N 1.31514 * 119.99566 * 5.11768 * 12 10 8 14 14 Si 1.86801 * 120.00261 * 185.11588 * 12 10 8 15 15 H 1.48502 * 109.46906 * 90.00035 * 14 12 10 16 16 H 1.48498 * 109.47178 * 210.00059 * 14 12 10 17 17 H 1.48494 * 109.46960 * 329.99969 * 14 12 10 18 18 C 1.50703 * 109.47262 * 56.04118 * 8 2 1 19 19 C 1.38234 * 119.99518 * 46.29590 * 18 8 2 20 20 C 1.38236 * 119.99845 * 179.79090 * 19 18 8 21 21 C 1.38236 * 119.99945 * 0.43764 * 20 19 18 22 22 C 1.38232 * 119.99814 * 359.81185 * 21 20 19 23 23 C 1.38229 * 120.00239 * 226.56627 * 18 8 2 24 24 H 1.09001 * 109.47049 * 59.99811 * 1 2 3 25 25 H 1.08998 * 109.47181 * 300.00272 * 1 2 3 26 26 H 1.09005 * 109.47559 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47371 * 53.95251 * 3 2 1 28 28 H 1.09003 * 109.47512 * 173.95441 * 3 2 1 29 29 H 1.09003 * 112.84820 * 45.32411 * 4 3 2 30 30 H 1.08994 * 113.61326 * 334.56373 * 5 4 3 31 31 H 1.09006 * 113.61698 * 105.46931 * 5 4 3 32 32 H 1.08994 * 113.53904 * 270.80655 * 6 5 4 33 33 H 1.09001 * 113.66013 * 139.93111 * 6 5 4 34 34 H 1.09000 * 113.61119 * 220.08936 * 7 6 5 35 35 H 1.08997 * 113.69699 * 89.19358 * 7 6 5 36 36 H 0.97001 * 119.99896 * 179.97438 * 13 12 10 37 37 H 1.08000 * 120.00117 * 359.97438 * 19 18 8 38 38 H 1.08005 * 119.99956 * 180.27804 * 20 19 18 39 39 H 1.08003 * 120.00005 * 179.84058 * 21 20 19 40 40 H 1.08005 * 119.99893 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.00114 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.6368 1.7888 -2.4505 6 6 2.4613 3.2659 -2.8479 7 6 2.0651 3.5313 -1.3859 8 6 1.9954 -0.7660 1.1375 9 1 1.7043 -0.2799 2.0687 10 6 3.4986 -0.8255 1.0505 11 1 3.9817 -0.8867 0.0865 12 6 4.2574 -0.8018 2.2015 13 7 3.6691 -0.8289 3.3775 14 14 6.1208 -0.7312 2.0907 15 1 6.5618 0.6866 2.0672 16 1 6.7130 -1.4144 3.2687 17 1 6.5687 -1.4096 0.8481 18 6 1.4345 -2.1644 1.1042 19 6 1.4242 -2.8768 -0.0804 20 6 0.9136 -4.1611 -0.1101 21 6 0.4052 -4.7296 1.0429 22 6 0.4109 -4.0152 2.2263 23 6 0.9253 -2.7325 2.2569 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.5611 1.9274 0.8309 28 1 3.0797 1.3444 0.1082 29 1 0.5935 1.8939 -1.6080 30 1 3.6391 1.5480 -2.0965 31 1 2.2720 1.0876 -3.2011 32 1 1.6508 3.4325 -3.5572 33 1 3.3907 3.7527 -3.1436 34 1 1.2395 4.2347 -1.2782 35 1 2.9099 3.7680 -0.7391 36 1 4.2029 -0.8126 4.1873 37 1 1.8176 -2.4311 -0.9820 38 1 0.9097 -4.7194 -1.0346 39 1 0.0040 -5.7320 1.0191 40 1 0.0140 -4.4595 3.1271 41 1 0.9298 -2.1744 3.1815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061457935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:41 Heat of formation + Delta-G solvation = 30.465411 kcal Electronic energy + Delta-G solvation = -19781.148379 eV Core-core repulsion = 17046.677882 eV Total energy + Delta-G solvation = -2734.470497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.39728 -39.57382 -37.36493 -34.62350 -32.21117 -31.49287 -29.14624 -28.84958 -26.36687 -25.94698 -24.48839 -23.18763 -22.26372 -21.07044 -20.09761 -18.52290 -17.44002 -16.96716 -16.45834 -16.07099 -15.80884 -15.53955 -15.30691 -14.99106 -14.39542 -14.04791 -13.88067 -13.70449 -13.54526 -13.21891 -13.21803 -12.83554 -12.75508 -12.54562 -12.48793 -12.10001 -11.90794 -11.79113 -11.56225 -11.29033 -11.17477 -10.94701 -10.92446 -10.56023 -9.55161 -9.24799 -8.88925 -8.14660 -6.23700 0.76846 0.81523 1.38017 1.39068 1.48857 2.38630 3.03986 3.26764 3.42282 3.87072 3.94301 4.02686 4.17824 4.30083 4.33454 4.44479 4.54000 4.58502 4.61827 4.70293 4.79507 4.90052 4.94276 4.97661 4.99457 5.00681 5.06764 5.13513 5.24036 5.27482 5.28408 5.44466 5.49085 5.52755 5.70324 5.76740 5.82425 5.86273 6.10782 6.14917 6.38555 6.48269 6.78162 6.94622 7.42716 8.90505 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.008449 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.249399 B = 3313.137160 C = 4657.919953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.533 5.533 3 C 0.083 3.917 4 C -0.104 4.104 5 C -0.127 4.127 6 C -0.128 4.128 7 C -0.136 4.136 8 C 0.243 3.757 9 H -0.010 1.010 10 C -0.497 4.497 11 H 0.055 0.945 12 C 0.017 3.983 13 N -0.915 5.915 14 Si 0.950 3.050 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.268 1.268 18 C -0.043 4.043 19 C -0.115 4.115 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.131 4.131 23 C -0.139 4.139 24 H 0.080 0.920 25 H 0.000 1.000 26 H 0.057 0.943 27 H -0.001 1.001 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.261 0.739 37 H 0.113 0.887 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 1.525 -8.943 10.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.257 5.257 3 C -0.045 4.045 4 C -0.123 4.123 5 C -0.165 4.165 6 C -0.166 4.166 7 C -0.174 4.174 8 C 0.136 3.864 9 H 0.008 0.992 10 C -0.536 4.536 11 H 0.073 0.927 12 C -0.183 4.183 13 N -0.554 5.554 14 Si 0.776 3.224 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.045 4.045 19 C -0.134 4.134 20 C -0.147 4.147 21 C -0.162 4.162 22 C -0.149 4.149 23 C -0.158 4.158 24 H 0.098 0.902 25 H 0.019 0.981 26 H 0.076 0.924 27 H 0.017 0.983 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.148 0.852 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.494 1.304 -9.178 10.776 hybrid contribution 0.895 0.470 1.594 1.888 sum -4.599 1.774 -7.583 9.045 Atomic orbital electron populations 1.22361 0.89042 1.01089 0.99475 1.62073 1.06107 1.13103 1.44407 1.21868 0.99760 0.87551 0.95323 1.22589 0.99770 0.95517 0.94398 1.22828 0.98774 0.97127 0.97753 1.22810 1.02054 0.95675 0.96019 1.22911 1.01216 0.95631 0.97641 1.18195 0.93496 0.87362 0.87354 0.99195 1.21074 0.90684 1.49540 0.92288 0.92709 1.25695 1.02701 0.94709 0.95176 1.70068 1.36768 1.50789 0.97765 0.85667 0.80758 0.78325 0.77656 1.19913 1.21229 1.19229 1.20342 0.92795 0.98182 0.93132 1.20976 1.00077 0.94773 0.97552 1.21379 0.99205 0.94895 0.99215 1.21254 1.01892 1.00594 0.92414 1.21251 1.00538 0.94040 0.99043 1.21027 1.00490 0.96798 0.97519 0.90151 0.98124 0.92387 0.98324 0.92103 0.88973 0.91862 0.91663 0.88898 0.90952 0.90652 0.91152 0.93020 0.86846 0.84159 0.83720 0.85168 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 9.01 127.69 1.15 2.22 16 2 N -0.53 -22.86 4.15 -905.95 -3.76 -26.62 16 3 C 0.08 3.37 4.62 86.30 0.40 3.77 16 4 C -0.10 -3.21 3.69 -10.27 -0.04 -3.24 16 5 C -0.13 -3.66 7.65 31.18 0.24 -3.42 16 6 C -0.13 -2.90 8.09 31.18 0.25 -2.64 16 7 C -0.14 -3.52 7.65 31.12 0.24 -3.28 16 8 C 0.24 12.27 1.75 43.42 0.08 12.34 16 9 H -0.01 -0.57 7.17 -2.38 -0.02 -0.59 16 10 C -0.50 -27.10 6.86 25.60 0.18 -26.93 16 11 H 0.05 3.03 7.82 -2.91 -0.02 3.00 16 12 C 0.02 0.95 5.45 84.66 0.46 1.41 16 13 N -0.92 -53.13 12.84 21.45 0.28 -52.86 16 14 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 C -0.04 -2.03 3.50 -19.87 -0.07 -2.10 16 19 C -0.12 -4.77 8.46 22.27 0.19 -4.58 16 20 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 21 C -0.14 -4.65 10.05 22.27 0.22 -4.43 16 22 C -0.13 -4.83 10.05 22.27 0.22 -4.61 16 23 C -0.14 -6.34 9.67 22.27 0.22 -6.12 16 24 H 0.08 2.51 6.30 -2.39 -0.02 2.49 16 25 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 26 H 0.06 2.19 6.29 -2.38 -0.02 2.18 16 27 H 0.00 -0.06 8.12 -2.38 -0.02 -0.08 16 28 H 0.06 2.78 6.50 -2.39 -0.02 2.77 16 29 H 0.09 2.66 6.29 -2.39 -0.02 2.64 16 30 H 0.06 2.05 7.92 -2.39 -0.02 2.03 16 31 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 36 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.11 4.73 7.91 -2.91 -0.02 4.71 16 38 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 39 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 40 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 41 H 0.09 4.44 7.99 -2.91 -0.02 4.41 16 Total: -1.00 -60.94 327.99 3.48 -57.46 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.98 Total: 21.77 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 3.96 Total: -45.79 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -3.48 Total: -79.48 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -60.94 3.48 -57.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061457935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.923 kcal (2) G-P(sol) polarization free energy of solvation -60.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds