Wall clock time and date at job start Mon Mar 30 2020 06:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.47113 * 2 1 4 4 C 1.46901 * 110.99979 * 197.75600 * 3 2 1 5 5 C 1.52998 * 109.47197 * 66.05016 * 4 3 2 6 6 C 1.52999 * 117.49977 * 184.99789 * 5 4 3 7 7 C 1.52997 * 117.49897 * 116.37353 * 5 4 3 8 8 C 1.46903 * 110.99903 * 73.80623 * 3 2 1 9 9 H 1.09007 * 109.47214 * 48.23725 * 8 3 2 10 10 C 1.50696 * 109.47186 * 168.24061 * 8 3 2 11 11 H 1.07995 * 120.00348 * 59.92047 * 10 8 3 12 12 C 1.37878 * 119.99846 * 239.91211 * 10 8 3 13 13 N 1.31520 * 119.99841 * 177.49141 * 12 10 8 14 14 Si 1.86799 * 120.00063 * 357.49653 * 12 10 8 15 15 H 1.48499 * 109.47131 * 84.47541 * 14 12 10 16 16 H 1.48499 * 109.47104 * 204.47170 * 14 12 10 17 17 H 1.48494 * 109.47314 * 324.47587 * 14 12 10 18 18 C 1.50706 * 109.47128 * 288.24269 * 8 3 2 19 19 C 1.38239 * 119.99588 * 313.54948 * 18 8 3 20 20 C 1.38237 * 119.99568 * 179.81317 * 19 18 8 21 21 C 1.38236 * 119.99949 * 0.38950 * 20 19 18 22 22 C 1.38226 * 120.00021 * 359.85869 * 21 20 19 23 23 C 1.38234 * 120.00012 * 133.81637 * 18 8 3 24 24 H 1.09001 * 109.46462 * 289.82668 * 1 2 3 25 25 H 1.08995 * 109.47193 * 49.82469 * 1 2 3 26 26 H 1.09000 * 109.46957 * 169.83117 * 1 2 3 27 27 H 1.09002 * 109.46892 * 240.00595 * 2 1 3 28 28 H 1.09001 * 109.47655 * 120.00524 * 2 1 3 29 29 H 1.08999 * 109.47176 * 306.04815 * 4 3 2 30 30 H 1.08998 * 109.47106 * 186.05048 * 4 3 2 31 31 H 1.08998 * 115.56088 * 330.69117 * 5 4 3 32 32 H 1.09006 * 117.49700 * 145.02257 * 6 5 4 33 33 H 1.08993 * 117.49944 * 0.02562 * 6 5 4 34 34 H 1.08996 * 117.50339 * 0.02562 * 7 5 4 35 35 H 1.09002 * 117.52001 * 214.97412 * 7 5 4 36 36 H 0.97004 * 119.99651 * 180.02562 * 13 12 10 37 37 H 1.07999 * 119.99949 * 359.97438 * 19 18 8 38 38 H 1.07997 * 119.99778 * 180.23036 * 20 19 18 39 39 H 1.08000 * 119.99272 * 179.83800 * 21 20 19 40 40 H 1.08003 * 120.00048 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.00168 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4266 1.4460 -0.4182 5 6 3.5422 1.0191 -1.8829 6 6 4.9478 0.9026 -2.4760 7 6 4.0382 2.0627 -2.8858 8 6 1.8346 2.0088 1.3170 9 1 2.2053 1.3380 2.0922 10 6 2.5973 3.3074 1.3695 11 1 2.3668 4.0978 0.6706 12 6 3.5896 3.4866 2.3099 13 7 4.2887 4.6005 2.3242 14 14 3.9410 2.1472 3.5637 15 1 4.8641 1.1455 2.9723 16 1 4.5687 2.7485 4.7677 17 1 2.6698 1.4827 3.9477 18 6 0.3691 2.2774 1.5442 19 6 -0.3880 2.8659 0.5485 20 6 -1.7331 3.1088 0.7554 21 6 -2.3191 2.7705 1.9608 22 6 -1.5608 2.1867 2.9582 23 6 -0.2166 1.9404 2.7501 24 1 -0.3632 0.3486 0.9668 25 1 -0.3633 0.6629 -0.7852 26 1 -0.3633 -1.0115 -0.1814 27 1 1.8933 -0.5138 -0.8901 28 1 1.8935 -0.5139 0.8899 29 1 4.0199 0.7755 0.2035 30 1 3.7949 2.4658 -0.3068 31 1 2.7905 0.3085 -2.2264 32 1 5.1207 0.1153 -3.2097 33 1 5.7901 1.1296 -1.8226 34 1 4.2826 3.0532 -2.5022 35 1 3.6131 2.0388 -3.8893 36 1 4.9870 4.7264 2.9856 37 1 0.0707 3.1336 -0.3919 38 1 -2.3255 3.5651 -0.0238 39 1 -3.3694 2.9627 2.1233 40 1 -2.0185 1.9228 3.9002 41 1 0.3758 1.4842 3.5293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069238193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:58 Heat of formation + Delta-G solvation = 56.866402 kcal Electronic energy + Delta-G solvation = -20145.631796 eV Core-core repulsion = 17412.306132 eV Total energy + Delta-G solvation = -2733.325664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.09591 -37.49442 -35.65050 -32.80564 -30.95688 -30.17531 -30.11459 -26.99055 -24.97352 -22.57259 -22.08948 -21.90892 -21.42781 -19.73189 -19.05924 -17.14016 -16.15543 -15.66229 -14.79432 -14.64377 -14.37007 -13.90526 -13.73507 -13.29283 -13.19393 -12.73257 -12.65149 -12.34673 -12.20780 -11.91942 -11.34573 -11.18129 -11.11633 -10.99800 -10.95771 -10.47818 -10.46200 -10.13646 -10.04249 -9.93606 -9.77666 -9.40644 -9.33332 -8.70891 -8.16407 -7.68964 -7.29969 -6.24446 -4.22380 2.13671 2.19665 3.15577 3.24050 3.25608 4.23653 4.25249 4.52645 4.82927 5.13967 5.28229 5.43327 5.51058 5.55762 5.62324 5.68723 5.73060 5.90394 5.94853 5.97245 6.02653 6.11919 6.25590 6.29000 6.34536 6.37568 6.44615 6.47931 6.53859 6.58665 6.65345 6.79911 6.81659 6.86330 7.13169 7.19276 7.30153 7.36367 7.55686 7.79439 8.07310 8.14087 8.52017 8.85945 9.37022 10.87268 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.009795 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.691376 B = 2857.911172 C = 3954.808478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 N -0.527 5.527 4 C 0.092 3.908 5 C -0.138 4.138 6 C -0.191 4.191 7 C -0.174 4.174 8 C 0.207 3.793 9 H 0.018 0.982 10 C -0.495 4.495 11 H 0.084 0.916 12 C 0.078 3.922 13 N -0.885 5.885 14 Si 0.866 3.134 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.265 1.265 18 C -0.015 4.015 19 C -0.090 4.090 20 C -0.130 4.130 21 C -0.149 4.149 22 C -0.125 4.125 23 C -0.140 4.140 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.267 0.733 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.664 -7.475 -4.487 10.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 N -0.252 5.252 4 C -0.035 4.035 5 C -0.157 4.157 6 C -0.229 4.229 7 C -0.211 4.211 8 C 0.102 3.898 9 H 0.035 0.965 10 C -0.533 4.533 11 H 0.102 0.898 12 C -0.126 4.126 13 N -0.522 5.522 14 Si 0.694 3.306 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.190 1.190 18 C -0.016 4.016 19 C -0.109 4.109 20 C -0.148 4.148 21 C -0.168 4.168 22 C -0.143 4.143 23 C -0.158 4.158 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.142 0.858 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.772 -7.098 -4.721 10.295 hybrid contribution 0.745 -1.100 1.427 1.950 sum -5.027 -8.197 -3.293 10.164 Atomic orbital electron populations 1.22080 0.95688 0.99927 1.03128 1.22115 0.95816 0.91194 0.99216 1.62191 1.18502 1.14191 1.30293 1.21568 0.88865 1.03015 0.90097 1.22414 0.95837 1.01658 0.95774 1.22922 0.94651 1.01403 1.03911 1.22938 1.03791 0.95102 0.99286 1.18839 0.89394 0.95363 0.86240 0.96490 1.20781 1.16182 0.98854 1.17495 0.89755 1.25049 0.95371 0.95307 0.96883 1.69870 1.21786 1.25129 1.35423 0.87031 0.78886 0.82629 0.82054 1.20052 1.21160 1.18977 1.20176 0.95852 0.93130 0.92403 1.20938 0.92650 0.97737 0.99555 1.21054 0.95570 1.01130 0.97012 1.20831 0.98945 1.02434 0.94553 1.20887 0.94284 1.00683 0.98468 1.20993 0.94645 1.02557 0.97651 0.91750 0.91929 0.94223 0.91989 0.96328 0.96428 0.87376 0.88368 0.89693 0.89110 0.88492 0.89744 0.92308 0.85814 0.87335 0.87555 0.87455 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.48 37.16 0.32 -2.16 16 2 C 0.05 0.80 5.54 -3.82 -0.02 0.78 16 3 N -0.53 -10.64 3.92 -229.43 -0.90 -11.54 16 4 C 0.09 1.85 4.91 -3.82 -0.02 1.83 16 5 C -0.14 -2.29 5.57 -90.62 -0.50 -2.80 16 6 C -0.19 -2.80 10.25 -26.73 -0.27 -3.07 16 7 C -0.17 -2.68 10.18 -26.73 -0.27 -2.95 16 8 C 0.21 4.70 1.71 -70.01 -0.12 4.58 16 9 H 0.02 0.41 4.12 -51.93 -0.21 0.20 16 10 C -0.49 -12.97 6.65 -34.44 -0.23 -13.19 16 11 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 12 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 13 N -0.89 -25.55 13.96 55.43 0.77 -24.77 16 14 Si 0.87 20.76 27.07 -169.99 -4.60 16.15 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.26 -6.13 6.35 56.52 0.36 -5.77 16 18 C -0.01 -0.30 2.51 -104.62 -0.26 -0.57 16 19 C -0.09 -1.76 7.28 -39.58 -0.29 -2.05 16 20 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 21 C -0.15 -2.42 10.05 -39.59 -0.40 -2.82 16 22 C -0.13 -2.14 10.05 -39.59 -0.40 -2.54 16 23 C -0.14 -2.77 8.72 -39.58 -0.35 -3.11 16 24 H 0.06 1.14 4.87 -51.93 -0.25 0.89 16 25 H 0.06 1.04 7.34 -51.93 -0.38 0.65 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.99 6.01 -51.93 -0.31 0.68 16 28 H 0.02 0.34 7.83 -51.93 -0.41 -0.06 16 29 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.11 2.50 6.02 -51.93 -0.31 2.19 16 31 H 0.10 1.55 6.42 -51.93 -0.33 1.22 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.10 1.61 8.03 -51.93 -0.42 1.19 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.12 2.48 7.92 -52.49 -0.42 2.06 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.11 2.14 7.74 -52.49 -0.41 1.74 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -27.23 320.42 -9.64 -36.87 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.43 Total: 7.12 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: -3.31 Total: -28.66 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.12 Total: -36.31 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.60 Total: 16.15 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.23 -9.64 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069238193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.737 kcal (2) G-P(sol) polarization free energy of solvation -27.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds