Wall clock time and date at job start Mon Mar 30 2020 06:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.47113 * 2 1 4 4 C 1.46901 * 110.99979 * 197.75600 * 3 2 1 5 5 C 1.52998 * 109.47197 * 66.05016 * 4 3 2 6 6 C 1.52999 * 117.49977 * 184.99789 * 5 4 3 7 7 C 1.52997 * 117.49897 * 116.37353 * 5 4 3 8 8 C 1.46903 * 110.99903 * 73.80623 * 3 2 1 9 9 H 1.09007 * 109.47214 * 48.23725 * 8 3 2 10 10 C 1.50696 * 109.47186 * 168.24061 * 8 3 2 11 11 H 1.07995 * 120.00348 * 59.92047 * 10 8 3 12 12 C 1.37878 * 119.99846 * 239.91211 * 10 8 3 13 13 N 1.31520 * 119.99841 * 177.49141 * 12 10 8 14 14 Si 1.86799 * 120.00063 * 357.49653 * 12 10 8 15 15 H 1.48499 * 109.47131 * 84.47541 * 14 12 10 16 16 H 1.48499 * 109.47104 * 204.47170 * 14 12 10 17 17 H 1.48494 * 109.47314 * 324.47587 * 14 12 10 18 18 C 1.50706 * 109.47128 * 288.24269 * 8 3 2 19 19 C 1.38239 * 119.99588 * 313.54948 * 18 8 3 20 20 C 1.38237 * 119.99568 * 179.81317 * 19 18 8 21 21 C 1.38236 * 119.99949 * 0.38950 * 20 19 18 22 22 C 1.38226 * 120.00021 * 359.85869 * 21 20 19 23 23 C 1.38234 * 120.00012 * 133.81637 * 18 8 3 24 24 H 1.09001 * 109.46462 * 289.82668 * 1 2 3 25 25 H 1.08995 * 109.47193 * 49.82469 * 1 2 3 26 26 H 1.09000 * 109.46957 * 169.83117 * 1 2 3 27 27 H 1.09002 * 109.46892 * 240.00595 * 2 1 3 28 28 H 1.09001 * 109.47655 * 120.00524 * 2 1 3 29 29 H 1.08999 * 109.47176 * 306.04815 * 4 3 2 30 30 H 1.08998 * 109.47106 * 186.05048 * 4 3 2 31 31 H 1.08998 * 115.56088 * 330.69117 * 5 4 3 32 32 H 1.09006 * 117.49700 * 145.02257 * 6 5 4 33 33 H 1.08993 * 117.49944 * 0.02562 * 6 5 4 34 34 H 1.08996 * 117.50339 * 0.02562 * 7 5 4 35 35 H 1.09002 * 117.52001 * 214.97412 * 7 5 4 36 36 H 0.97004 * 119.99651 * 180.02562 * 13 12 10 37 37 H 1.07999 * 119.99949 * 359.97438 * 19 18 8 38 38 H 1.07997 * 119.99778 * 180.23036 * 20 19 18 39 39 H 1.08000 * 119.99272 * 179.83800 * 21 20 19 40 40 H 1.08003 * 120.00048 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.00168 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4266 1.4460 -0.4182 5 6 3.5422 1.0191 -1.8829 6 6 4.9478 0.9026 -2.4760 7 6 4.0382 2.0627 -2.8858 8 6 1.8346 2.0088 1.3170 9 1 2.2053 1.3380 2.0922 10 6 2.5973 3.3074 1.3695 11 1 2.3668 4.0978 0.6706 12 6 3.5896 3.4866 2.3099 13 7 4.2887 4.6005 2.3242 14 14 3.9410 2.1472 3.5637 15 1 4.8641 1.1455 2.9723 16 1 4.5687 2.7485 4.7677 17 1 2.6698 1.4827 3.9477 18 6 0.3691 2.2774 1.5442 19 6 -0.3880 2.8659 0.5485 20 6 -1.7331 3.1088 0.7554 21 6 -2.3191 2.7705 1.9608 22 6 -1.5608 2.1867 2.9582 23 6 -0.2166 1.9404 2.7501 24 1 -0.3632 0.3486 0.9668 25 1 -0.3633 0.6629 -0.7852 26 1 -0.3633 -1.0115 -0.1814 27 1 1.8933 -0.5138 -0.8901 28 1 1.8935 -0.5139 0.8899 29 1 4.0199 0.7755 0.2035 30 1 3.7949 2.4658 -0.3068 31 1 2.7905 0.3085 -2.2264 32 1 5.1207 0.1153 -3.2097 33 1 5.7901 1.1296 -1.8226 34 1 4.2826 3.0532 -2.5022 35 1 3.6131 2.0388 -3.8893 36 1 4.9870 4.7264 2.9856 37 1 0.0707 3.1336 -0.3919 38 1 -2.3255 3.5651 -0.0238 39 1 -3.3694 2.9627 2.1233 40 1 -2.0185 1.9228 3.9002 41 1 0.3758 1.4842 3.5293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069238193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:58 Heat of formation + Delta-G solvation = 42.766670 kcal Electronic energy + Delta-G solvation = -20146.243207 eV Core-core repulsion = 17412.306132 eV Total energy + Delta-G solvation = -2733.937075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61765 -38.91073 -37.08331 -34.77433 -32.56750 -31.64000 -31.54616 -28.69804 -26.66247 -24.20519 -23.50523 -23.16420 -22.83106 -21.22533 -20.63140 -19.16220 -17.59948 -17.15433 -16.37738 -16.18212 -15.97182 -15.47266 -15.21886 -14.87348 -14.68787 -14.45474 -14.09277 -13.84293 -13.78490 -13.45443 -12.92775 -12.92310 -12.55932 -12.46564 -12.30147 -12.03857 -11.94841 -11.84288 -11.60706 -11.46906 -11.41639 -11.04421 -10.80107 -10.69186 -9.58337 -9.18053 -8.95658 -8.36225 -6.35990 0.70178 0.77168 1.21447 1.24398 1.31891 2.22727 2.81902 2.99959 3.20295 3.39687 3.95150 4.08952 4.16453 4.24580 4.29352 4.32153 4.36734 4.46905 4.50698 4.59428 4.66064 4.74139 4.81223 4.85417 4.92783 4.98120 5.01479 5.09517 5.11185 5.19722 5.31098 5.33464 5.38494 5.44555 5.52582 5.56206 5.78313 5.83270 6.04523 6.13736 6.34684 6.45723 6.65965 6.76703 7.26310 8.79763 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.009795 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.691376 B = 2857.911172 C = 3954.808478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.528 5.528 4 C 0.098 3.902 5 C -0.149 4.149 6 C -0.173 4.173 7 C -0.175 4.175 8 C 0.214 3.786 9 H 0.004 0.996 10 C -0.483 4.483 11 H 0.040 0.960 12 C 0.028 3.972 13 N -0.934 5.934 14 Si 0.919 3.081 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.251 1.251 18 C -0.038 4.038 19 C -0.104 4.104 20 C -0.126 4.126 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.158 4.158 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.011 0.989 29 H 0.004 0.996 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.267 0.733 37 H 0.107 0.893 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.014 -9.586 -4.957 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 N -0.252 5.252 4 C -0.030 4.030 5 C -0.168 4.168 6 C -0.210 4.210 7 C -0.212 4.212 8 C 0.107 3.893 9 H 0.022 0.978 10 C -0.522 4.522 11 H 0.058 0.942 12 C -0.171 4.171 13 N -0.574 5.574 14 Si 0.744 3.256 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.176 1.176 18 C -0.039 4.039 19 C -0.122 4.122 20 C -0.144 4.144 21 C -0.157 4.157 22 C -0.139 4.139 23 C -0.177 4.177 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.029 0.971 29 H 0.022 0.978 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.140 -9.226 -5.200 13.357 hybrid contribution 1.368 -0.409 1.492 2.065 sum -6.772 -9.635 -3.708 12.347 Atomic orbital electron populations 1.21984 0.94270 1.01414 1.02268 1.22222 0.96964 0.89338 0.99843 1.62149 1.18349 1.16112 1.28600 1.21408 0.88641 1.00218 0.92737 1.22290 0.98018 1.02982 0.93475 1.23007 0.93028 1.01434 1.03539 1.22957 1.04199 0.94103 0.99950 1.18660 0.90525 0.93145 0.86955 0.97835 1.20811 1.16228 0.99293 1.15843 0.94182 1.25693 0.95405 0.97171 0.98849 1.70001 1.23154 1.27374 1.36856 0.86179 0.79252 0.80319 0.79861 1.19560 1.20921 1.17570 1.20021 0.94898 0.95238 0.93758 1.20865 0.94009 0.98597 0.98732 1.21372 0.94479 1.00190 0.98328 1.21281 1.00683 1.00308 0.93400 1.21236 0.93078 0.99579 1.00017 1.21081 0.96167 1.03507 0.96937 0.93073 0.92259 0.91491 0.89823 0.97087 0.97811 0.91596 0.86700 0.86479 0.90055 0.90861 0.87204 0.92394 0.87526 0.84506 0.83658 0.84397 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.48 71.98 0.61 -3.76 16 2 C 0.04 1.52 5.54 86.30 0.48 1.99 16 3 N -0.53 -21.74 3.92 -879.77 -3.44 -25.19 16 4 C 0.10 4.08 4.91 86.30 0.42 4.50 16 5 C -0.15 -4.85 5.57 -10.80 -0.06 -4.91 16 6 C -0.17 -4.80 10.25 30.59 0.31 -4.48 16 7 C -0.18 -5.31 10.18 30.59 0.31 -4.99 16 8 C 0.21 9.98 1.71 43.42 0.07 10.05 16 9 H 0.00 0.20 4.12 -2.38 -0.01 0.19 16 10 C -0.48 -26.86 6.65 25.60 0.17 -26.69 16 11 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 12 C 0.03 1.60 5.47 84.65 0.46 2.06 16 13 N -0.93 -56.99 13.96 21.45 0.30 -56.69 16 14 Si 0.92 44.15 27.07 68.60 1.86 46.01 16 15 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 17 H -0.25 -11.43 6.35 99.48 0.63 -10.80 16 18 C -0.04 -1.61 2.51 -19.86 -0.05 -1.66 16 19 C -0.10 -4.00 7.28 22.27 0.16 -3.84 16 20 C -0.13 -3.94 10.05 22.27 0.22 -3.72 16 21 C -0.14 -3.94 10.05 22.27 0.22 -3.72 16 22 C -0.12 -3.78 10.05 22.27 0.22 -3.55 16 23 C -0.16 -6.10 8.72 22.27 0.19 -5.91 16 24 H 0.05 1.73 4.87 -2.39 -0.01 1.72 16 25 H 0.06 1.86 7.34 -2.39 -0.02 1.84 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 2.50 6.01 -2.39 -0.01 2.48 16 28 H 0.01 0.39 7.83 -2.39 -0.02 0.37 16 29 H 0.00 0.16 8.12 -2.39 -0.02 0.14 16 30 H 0.07 3.29 6.02 -2.39 -0.01 3.27 16 31 H 0.12 3.37 6.42 -2.39 -0.02 3.35 16 32 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.07 2.56 8.03 -2.39 -0.02 2.54 16 35 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.11 4.40 7.92 -2.91 -0.02 4.38 16 38 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.10 3.93 7.74 -2.91 -0.02 3.90 16 Total: -1.00 -62.86 320.42 3.39 -59.47 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.92 Total: 25.03 kcal Atomic # 6 Polarization: -52.39 SS G_CDS: 3.76 Total: -48.63 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -3.15 Total: -81.88 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.86 Total: 46.01 kcal Total: -62.86 3.39 -59.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069238193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.236 kcal (2) G-P(sol) polarization free energy of solvation -62.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds