Wall clock time and date at job start Mon Mar 30 2020 06:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47145 * 2 1 4 4 C 1.52998 * 109.47058 * 120.00107 * 2 1 3 5 5 C 1.53001 * 109.47234 * 185.00159 * 4 2 1 6 6 C 1.53006 * 117.49885 * 243.74365 * 5 4 2 7 7 C 1.53005 * 117.49875 * 175.08836 * 5 4 2 8 8 N 1.46906 * 109.47072 * 239.99838 * 2 1 3 9 9 C 1.46896 * 111.00088 * 85.00492 * 8 2 1 10 10 H 1.09005 * 109.46694 * 324.99468 * 9 8 2 11 11 C 1.50694 * 109.47496 * 84.99513 * 9 8 2 12 12 H 1.08000 * 120.00155 * 234.80701 * 11 9 8 13 13 C 1.37878 * 119.99775 * 54.80419 * 11 9 8 14 14 N 1.31509 * 120.00179 * 2.73258 * 13 11 9 15 15 Si 1.86800 * 120.00068 * 182.73266 * 13 11 9 16 16 H 1.48500 * 109.47008 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47206 * 119.99575 * 15 13 11 18 18 H 1.48504 * 109.47273 * 240.00309 * 15 13 11 19 19 C 1.50695 * 109.47160 * 204.99933 * 9 8 2 20 20 C 1.38236 * 119.99911 * 330.59942 * 19 9 8 21 21 C 1.38233 * 119.99904 * 179.97438 * 20 19 9 22 22 C 1.38238 * 120.00343 * 359.97438 * 21 20 19 23 23 C 1.38239 * 119.99644 * 359.96078 * 22 21 20 24 24 C 1.38235 * 119.99991 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47236 * 60.00515 * 1 2 3 26 26 H 1.09007 * 109.47354 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47440 * 299.99760 * 1 2 3 28 28 H 1.09004 * 109.46865 * 304.99970 * 4 2 1 29 29 H 1.09007 * 109.47558 * 64.99758 * 4 2 1 30 30 H 1.08997 * 115.54731 * 29.41522 * 5 4 2 31 31 H 1.08998 * 117.49424 * 0.02562 * 6 5 4 32 32 H 1.08994 * 117.49736 * 145.01304 * 6 5 4 33 33 H 1.09006 * 117.49505 * 214.97728 * 7 5 4 34 34 H 1.09001 * 117.49899 * 359.97195 * 7 5 4 35 35 H 1.00907 * 110.99437 * 208.95335 * 8 2 1 36 36 H 0.97006 * 120.00073 * 180.02562 * 14 13 11 37 37 H 1.07995 * 120.00224 * 0.25401 * 20 19 9 38 38 H 1.07997 * 119.99913 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.00395 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99612 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.99891 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.3696 -1.9110 1.2176 7 6 4.2609 -1.1747 2.5552 8 7 2.0196 -0.6926 -1.1995 9 6 2.0825 0.2225 -2.3469 10 1 1.2576 0.9328 -2.2907 11 6 3.3911 0.9694 -2.3227 12 1 3.3970 2.0492 -2.3424 13 6 4.5809 0.2742 -2.2754 14 7 4.5759 -1.0405 -2.3057 15 14 6.1999 1.1998 -2.1684 16 1 5.9345 2.6608 -2.1498 17 1 6.9118 0.8097 -0.9250 18 1 7.0404 0.8649 -3.3460 19 6 1.9787 -0.5677 -3.6258 20 6 2.4431 -1.8688 -3.6740 21 6 2.3474 -2.5939 -4.8471 22 6 1.7867 -2.0180 -5.9718 23 6 1.3210 -0.7174 -5.9232 24 6 1.4165 0.0076 -4.7501 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7515 -1.7716 1.2056 30 1 3.9925 0.2792 0.8572 31 1 3.8127 -2.8416 1.1080 32 1 5.3270 -1.8721 0.6981 33 1 5.1469 -0.6517 2.9152 34 1 3.6325 -1.6206 3.3262 35 1 2.9173 -1.1206 -1.0287 36 1 5.4129 -1.5297 -2.2721 37 1 2.8767 -2.3204 -2.7940 38 1 2.7106 -3.6102 -4.8848 39 1 1.7123 -2.5843 -6.8884 40 1 0.8834 -0.2674 -6.8021 41 1 1.0531 1.0239 -4.7122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070102112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:54 Heat of formation + Delta-G solvation = 40.696676 kcal Electronic energy + Delta-G solvation = -20144.443905 eV Core-core repulsion = 17410.417068 eV Total energy + Delta-G solvation = -2734.026836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.34154 -37.44549 -35.37910 -33.03769 -30.84262 -29.68133 -28.38885 -26.85430 -25.93163 -22.69989 -21.85230 -21.35389 -20.32989 -19.72137 -19.31141 -16.44780 -15.88553 -15.28368 -14.85692 -14.49559 -14.01342 -13.88319 -13.44509 -13.27021 -12.61018 -12.27429 -12.14221 -11.96778 -11.63029 -11.51252 -11.35931 -11.16756 -11.01857 -10.87811 -10.70513 -10.44664 -10.41065 -10.25631 -9.97491 -9.58356 -9.54344 -9.32787 -9.27667 -8.65234 -7.73699 -7.36432 -6.94165 -6.00448 -4.27158 2.58970 2.70589 3.18117 3.28346 3.31690 4.30099 4.34266 5.03597 5.15636 5.18210 5.40663 5.43317 5.66099 5.81315 5.88482 5.98504 6.00847 6.03085 6.09707 6.20559 6.28402 6.30286 6.42689 6.48785 6.51030 6.60839 6.64324 6.78503 6.84191 6.90919 6.96289 6.99366 7.10101 7.24387 7.37636 7.60560 7.69985 7.86062 8.06317 8.13405 8.32434 8.49935 8.90426 9.25959 9.46475 10.83408 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.008836 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.140933 B = 3168.241751 C = 3956.374692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.089 3.911 3 H 0.039 0.961 4 C -0.085 4.085 5 C -0.137 4.137 6 C -0.162 4.162 7 C -0.198 4.198 8 N -0.685 5.685 9 C 0.238 3.762 10 H 0.033 0.967 11 C -0.538 4.538 12 H 0.055 0.945 13 C 0.078 3.922 14 N -0.870 5.870 15 Si 0.883 3.117 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.016 4.016 20 C -0.050 4.050 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.136 4.136 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.372 0.628 36 H 0.264 0.736 37 H 0.144 0.856 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.296 -1.659 3.858 5.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 H 0.057 0.943 4 C -0.122 4.122 5 C -0.155 4.155 6 C -0.199 4.199 7 C -0.235 4.235 8 N -0.324 5.324 9 C 0.129 3.871 10 H 0.051 0.949 11 C -0.577 4.577 12 H 0.073 0.927 13 C -0.126 4.126 14 N -0.508 5.508 15 Si 0.711 3.289 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.018 4.018 20 C -0.068 4.068 21 C -0.167 4.167 22 C -0.172 4.172 23 C -0.163 4.163 24 C -0.155 4.155 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.199 0.801 36 H 0.075 0.925 37 H 0.161 0.839 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.756 -2.076 3.717 5.677 hybrid contribution 1.994 1.110 -0.041 2.283 sum -1.762 -0.966 3.677 4.190 Atomic orbital electron populations 1.21808 0.96698 1.01076 0.99858 1.21252 0.93732 0.96607 0.90592 0.94253 1.21320 0.92385 1.00842 0.97689 1.22278 0.94646 0.98464 1.00132 1.22850 1.02265 0.96082 0.98684 1.22962 1.02899 1.05872 0.91776 1.60981 1.36746 1.31938 1.02748 1.18102 0.94299 0.88889 0.85830 0.94855 1.21718 0.91330 0.93368 1.51306 0.92676 1.24903 0.98672 0.94872 0.94114 1.69620 1.26708 1.05283 1.49212 0.86678 0.84140 0.80360 0.77760 1.19913 1.20859 1.20914 1.20209 0.92060 0.93609 0.95883 1.21300 0.94026 0.93838 0.97660 1.21085 1.01946 0.99280 0.94408 1.20742 1.02983 0.95778 0.97738 1.20731 1.03152 0.95116 0.97278 1.20837 1.02223 0.98913 0.93520 0.93229 0.92962 0.94197 0.92486 0.91924 0.87744 0.89213 0.89214 0.89807 0.89597 0.80060 0.92508 0.83881 0.88257 0.88471 0.88283 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.40 37.15 0.35 -1.95 16 2 C 0.09 1.71 2.41 -67.71 -0.16 1.54 16 3 H 0.04 0.83 7.64 -51.93 -0.40 0.43 16 4 C -0.08 -1.43 5.09 -26.73 -0.14 -1.57 16 5 C -0.14 -2.42 4.69 -90.61 -0.42 -2.85 16 6 C -0.16 -2.75 9.95 -26.69 -0.27 -3.01 16 7 C -0.20 -2.98 10.25 -26.69 -0.27 -3.25 16 8 N -0.69 -14.98 5.19 -102.19 -0.53 -15.51 16 9 C 0.24 5.62 2.32 -70.02 -0.16 5.46 16 10 H 0.03 0.79 7.06 -51.93 -0.37 0.42 16 11 C -0.54 -13.70 8.52 -34.44 -0.29 -14.00 16 12 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 13 C 0.08 1.94 5.05 -17.82 -0.09 1.85 16 14 N -0.87 -21.34 7.99 55.43 0.44 -20.90 16 15 Si 0.88 20.17 29.54 -169.99 -5.02 15.15 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C -0.02 -0.39 4.79 -104.63 -0.50 -0.89 16 20 C -0.05 -1.15 7.65 -39.58 -0.30 -1.45 16 21 C -0.15 -3.12 10.05 -39.58 -0.40 -3.52 16 22 C -0.15 -3.03 10.05 -39.58 -0.40 -3.43 16 23 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 24 C -0.14 -2.98 9.70 -39.58 -0.38 -3.36 16 25 H 0.05 0.87 7.43 -51.93 -0.39 0.48 16 26 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.06 7.88 -51.93 -0.41 0.65 16 30 H 0.10 2.12 8.08 -51.93 -0.42 1.70 16 31 H 0.09 1.47 8.03 -51.93 -0.42 1.06 16 32 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.37 8.43 3.98 -39.29 -0.16 8.28 16 36 H 0.26 6.34 8.31 -40.82 -0.34 6.00 16 37 H 0.14 3.47 5.61 -52.49 -0.29 3.18 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 326.91 15.07 4.93 4.93 Total: -1.00 -25.04 326.91 -10.64 -35.68 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -6.62 Total: 14.35 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: -3.84 Total: -33.70 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.09 Total: -36.41 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -25.04 -10.64 -35.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070102112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.375 kcal (2) G-P(sol) polarization free energy of solvation -25.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds