Wall clock time and date at job start Mon Mar 30 2020 06:26:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08994 * 109.47145 * 2 1
4 4 C 1.52998 * 109.47058 * 120.00107 * 2 1 3
5 5 C 1.53001 * 109.47234 * 185.00159 * 4 2 1
6 6 C 1.53006 * 117.49885 * 243.74365 * 5 4 2
7 7 C 1.53005 * 117.49875 * 175.08836 * 5 4 2
8 8 N 1.46906 * 109.47072 * 239.99838 * 2 1 3
9 9 C 1.46896 * 111.00088 * 85.00492 * 8 2 1
10 10 H 1.09005 * 109.46694 * 324.99468 * 9 8 2
11 11 C 1.50694 * 109.47496 * 84.99513 * 9 8 2
12 12 H 1.08000 * 120.00155 * 234.80701 * 11 9 8
13 13 C 1.37878 * 119.99775 * 54.80419 * 11 9 8
14 14 N 1.31509 * 120.00179 * 2.73258 * 13 11 9
15 15 Si 1.86800 * 120.00068 * 182.73266 * 13 11 9
16 16 H 1.48500 * 109.47008 * 359.97438 * 15 13 11
17 17 H 1.48496 * 109.47206 * 119.99575 * 15 13 11
18 18 H 1.48504 * 109.47273 * 240.00309 * 15 13 11
19 19 C 1.50695 * 109.47160 * 204.99933 * 9 8 2
20 20 C 1.38236 * 119.99911 * 330.59942 * 19 9 8
21 21 C 1.38233 * 119.99904 * 179.97438 * 20 19 9
22 22 C 1.38238 * 120.00343 * 359.97438 * 21 20 19
23 23 C 1.38239 * 119.99644 * 359.96078 * 22 21 20
24 24 C 1.38235 * 119.99991 * 0.02562 * 23 22 21
25 25 H 1.08998 * 109.47236 * 60.00515 * 1 2 3
26 26 H 1.09007 * 109.47354 * 179.97438 * 1 2 3
27 27 H 1.08998 * 109.47440 * 299.99760 * 1 2 3
28 28 H 1.09004 * 109.46865 * 304.99970 * 4 2 1
29 29 H 1.09007 * 109.47558 * 64.99758 * 4 2 1
30 30 H 1.08997 * 115.54731 * 29.41522 * 5 4 2
31 31 H 1.08998 * 117.49424 * 0.02562 * 6 5 4
32 32 H 1.08994 * 117.49736 * 145.01304 * 6 5 4
33 33 H 1.09006 * 117.49505 * 214.97728 * 7 5 4
34 34 H 1.09001 * 117.49899 * 359.97195 * 7 5 4
35 35 H 1.00907 * 110.99437 * 208.95335 * 8 2 1
36 36 H 0.97006 * 120.00073 * 180.02562 * 14 13 11
37 37 H 1.07995 * 120.00224 * 0.25401 * 20 19 9
38 38 H 1.07997 * 119.99913 * 179.97438 * 21 20 19
39 39 H 1.07994 * 120.00395 * 179.97438 * 22 21 20
40 40 H 1.08001 * 119.99612 * 179.97438 * 23 22 21
41 41 H 1.07997 * 119.99891 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7213 1.2492
5 6 3.5648 -0.6133 1.3137
6 6 4.3696 -1.9110 1.2176
7 6 4.2609 -1.1747 2.5552
8 7 2.0196 -0.6926 -1.1995
9 6 2.0825 0.2225 -2.3469
10 1 1.2576 0.9328 -2.2907
11 6 3.3911 0.9694 -2.3227
12 1 3.3970 2.0492 -2.3424
13 6 4.5809 0.2742 -2.2754
14 7 4.5759 -1.0405 -2.3057
15 14 6.1999 1.1998 -2.1684
16 1 5.9345 2.6608 -2.1498
17 1 6.9118 0.8097 -0.9250
18 1 7.0404 0.8649 -3.3460
19 6 1.9787 -0.5677 -3.6258
20 6 2.4431 -1.8688 -3.6740
21 6 2.3474 -2.5939 -4.8471
22 6 1.7867 -2.0180 -5.9718
23 6 1.3210 -0.7174 -5.9232
24 6 1.4165 0.0076 -4.7501
25 1 -0.3633 0.5137 -0.8900
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3634 0.5138 0.8900
28 1 1.6053 -0.2617 2.1370
29 1 1.7515 -1.7716 1.2056
30 1 3.9925 0.2792 0.8572
31 1 3.8127 -2.8416 1.1080
32 1 5.3270 -1.8721 0.6981
33 1 5.1469 -0.6517 2.9152
34 1 3.6325 -1.6206 3.3262
35 1 2.9173 -1.1206 -1.0287
36 1 5.4129 -1.5297 -2.2721
37 1 2.8767 -2.3204 -2.7940
38 1 2.7106 -3.6102 -4.8848
39 1 1.7123 -2.5843 -6.8884
40 1 0.8834 -0.2674 -6.8021
41 1 1.0531 1.0239 -4.7122
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000070102112.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:26:53
Heat of formation + Delta-G solvation = 30.587263 kcal
Electronic energy + Delta-G solvation = -20144.882282 eV
Core-core repulsion = 17410.417068 eV
Total energy + Delta-G solvation = -2734.465213 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.163 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-39.98853 -38.89927 -36.95456 -34.75018 -32.60205 -31.33091 -30.01713 -28.23194
-27.76876 -24.46650 -23.14096 -22.99373 -21.80718 -21.38011 -20.83005 -18.34261
-17.50979 -16.94794 -16.45262 -16.07202 -15.58814 -15.44267 -15.09911 -14.83480
-14.25319 -13.88648 -13.66267 -13.53157 -13.22756 -13.21229 -12.92900 -12.87464
-12.63804 -12.34427 -12.29221 -12.09905 -11.92436 -11.84471 -11.72707 -11.30842
-11.17523 -10.80833 -10.65283 -10.52179 -9.39781 -9.07334 -8.71146 -7.89141
-6.24134 0.91599 1.06145 1.31594 1.37943 1.44095 2.38833 3.02341
3.13450 3.42936 3.80518 3.95485 4.11329 4.21369 4.38084 4.40422
4.42227 4.56576 4.63611 4.77530 4.79188 4.81429 4.84217 4.99237
5.01117 5.07411 5.09642 5.17576 5.27294 5.30572 5.34349 5.39605
5.50990 5.55573 5.62740 5.69806 5.75793 5.95899 6.14368 6.16849
6.43293 6.57516 6.66326 7.07967 7.40463 7.58583 8.88622
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.016189 B = 0.008836 C = 0.007075
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1729.140933 B = 3168.241751 C = 3956.374692
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.083 3.917
3 H 0.013 0.987
4 C -0.074 4.074
5 C -0.156 4.156
6 C -0.171 4.171
7 C -0.166 4.166
8 N -0.686 5.686
9 C 0.242 3.758
10 H 0.019 0.981
11 C -0.559 4.559
12 H 0.034 0.966
13 C 0.055 3.945
14 N -0.868 5.868
15 Si 0.925 3.075
16 H -0.282 1.282
17 H -0.276 1.276
18 H -0.286 1.286
19 C -0.043 4.043
20 C -0.068 4.068
21 C -0.156 4.156
22 C -0.150 4.150
23 C -0.142 4.142
24 C -0.154 4.154
25 H 0.034 0.966
26 H 0.056 0.944
27 H 0.067 0.933
28 H 0.081 0.919
29 H 0.066 0.934
30 H 0.070 0.930
31 H 0.095 0.905
32 H 0.072 0.928
33 H 0.092 0.908
34 H 0.112 0.888
35 H 0.367 0.633
36 H 0.264 0.736
37 H 0.126 0.874
38 H 0.120 0.880
39 H 0.134 0.866
40 H 0.132 0.868
41 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.709 -2.697 3.925 6.036
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.028 4.028
3 H 0.031 0.969
4 C -0.112 4.112
5 C -0.174 4.174
6 C -0.208 4.208
7 C -0.203 4.203
8 N -0.323 5.323
9 C 0.132 3.868
10 H 0.038 0.962
11 C -0.598 4.598
12 H 0.053 0.947
13 C -0.148 4.148
14 N -0.505 5.505
15 Si 0.752 3.248
16 H -0.207 1.207
17 H -0.202 1.202
18 H -0.212 1.212
19 C -0.044 4.044
20 C -0.086 4.086
21 C -0.174 4.174
22 C -0.168 4.168
23 C -0.160 4.160
24 C -0.173 4.173
25 H 0.054 0.946
26 H 0.075 0.925
27 H 0.086 0.914
28 H 0.100 0.900
29 H 0.085 0.915
30 H 0.088 0.912
31 H 0.113 0.887
32 H 0.090 0.910
33 H 0.110 0.890
34 H 0.130 0.870
35 H 0.193 0.807
36 H 0.074 0.926
37 H 0.144 0.856
38 H 0.138 0.862
39 H 0.152 0.848
40 H 0.150 0.850
41 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -4.178 -3.118 3.790 6.445
hybrid contribution 2.106 1.438 -0.108 2.552
sum -2.072 -1.681 3.682 4.547
Atomic orbital electron populations
1.21726 0.94797 1.01512 1.00554 1.21392 0.95240 0.95247 0.90893
0.96927 1.21242 0.91860 1.00816 0.97283 1.22152 0.95202 0.97429
1.02648 1.22815 1.01413 0.96031 1.00561 1.23048 1.02673 1.03589
0.90982 1.61027 1.36288 1.31701 1.03325 1.17977 0.92812 0.88938
0.87048 0.96239 1.21771 0.92859 0.92538 1.52661 0.94720 1.25239
1.00075 0.95521 0.93994 1.69722 1.26848 1.05391 1.48515 0.86036
0.81956 0.79122 0.77641 1.20707 1.20209 1.21189 1.20313 0.93617
0.94193 0.96270 1.21201 0.95194 0.94045 0.98196 1.21368 1.01726
1.00191 0.94082 1.21156 1.01289 0.95818 0.98541 1.21117 1.02148
0.95205 0.97486 1.21055 1.02631 0.99519 0.94057 0.94634 0.92535
0.91425 0.90026 0.91532 0.91177 0.88679 0.90953 0.88954 0.87003
0.80718 0.92575 0.85641 0.86188 0.84815 0.84969 0.87656
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.26 9.40 71.98 0.68 -3.59 16
2 C 0.08 3.23 2.41 44.91 0.11 3.34 16
3 H 0.01 0.56 7.64 -2.39 -0.02 0.54 16
4 C -0.07 -2.45 5.09 30.59 0.16 -2.30 16
5 C -0.16 -5.48 4.69 -10.79 -0.05 -5.53 16
6 C -0.17 -5.74 9.95 30.62 0.30 -5.43 16
7 C -0.17 -4.65 10.25 30.62 0.31 -4.34 16
8 N -0.69 -30.85 5.19 -477.21 -2.48 -33.33 16
9 C 0.24 11.88 2.32 43.42 0.10 11.98 16
10 H 0.02 0.97 7.06 -2.38 -0.02 0.96 16
11 C -0.56 -29.68 8.52 25.60 0.22 -29.46 16
12 H 0.03 1.92 7.81 -2.91 -0.02 1.89 16
13 C 0.05 2.81 5.05 84.66 0.43 3.24 16
14 N -0.87 -43.41 7.99 21.45 0.17 -43.23 16
15 Si 0.92 42.23 29.54 68.60 2.03 44.25 16
16 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16
17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16
18 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16
19 C -0.04 -2.05 4.79 -19.87 -0.10 -2.15 16
20 C -0.07 -3.15 7.65 22.27 0.17 -2.98 16
21 C -0.16 -6.27 10.05 22.27 0.22 -6.05 16
22 C -0.15 -5.46 10.05 22.27 0.22 -5.23 16
23 C -0.14 -5.30 10.05 22.27 0.22 -5.08 16
24 C -0.15 -6.70 9.70 22.27 0.22 -6.48 16
25 H 0.03 1.25 7.43 -2.39 -0.02 1.24 16
26 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16
27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
28 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16
29 H 0.07 2.15 7.88 -2.38 -0.02 2.13 16
30 H 0.07 2.96 8.08 -2.39 -0.02 2.94 16
31 H 0.09 3.05 8.03 -2.39 -0.02 3.03 16
32 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16
33 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16
34 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16
35 H 0.37 17.10 3.98 -89.69 -0.36 16.75 16
36 H 0.26 12.83 8.31 -92.70 -0.77 12.06 16
37 H 0.13 6.21 5.61 -2.91 -0.02 6.20 16
38 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16
39 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16
40 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16
41 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16
Total: -1.00 -54.70 326.91 3.57 -51.13
By element:
Atomic # 1 Polarization: 40.60 SS G_CDS: 0.63 Total: 41.24 kcal
Atomic # 6 Polarization: -63.27 SS G_CDS: 3.22 Total: -60.06 kcal
Atomic # 7 Polarization: -74.26 SS G_CDS: -2.31 Total: -76.56 kcal
Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal
Total: -54.70 3.57 -51.13 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070102112.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.714 kcal
(2) G-P(sol) polarization free energy of solvation -54.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.017 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.127 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.587 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds