Wall clock time and date at job start Mon Mar 30 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47145 * 2 1 4 4 C 1.52998 * 109.47058 * 120.00107 * 2 1 3 5 5 C 1.53001 * 109.47234 * 185.00159 * 4 2 1 6 6 C 1.53006 * 117.49885 * 243.74365 * 5 4 2 7 7 C 1.53005 * 117.49875 * 175.08836 * 5 4 2 8 8 N 1.46906 * 109.47072 * 239.99838 * 2 1 3 9 9 C 1.46896 * 111.00088 * 85.00492 * 8 2 1 10 10 H 1.09005 * 109.46694 * 324.99468 * 9 8 2 11 11 C 1.50694 * 109.47496 * 84.99513 * 9 8 2 12 12 H 1.08000 * 120.00155 * 234.80701 * 11 9 8 13 13 C 1.37878 * 119.99775 * 54.80419 * 11 9 8 14 14 N 1.31509 * 120.00179 * 2.73258 * 13 11 9 15 15 Si 1.86800 * 120.00068 * 182.73266 * 13 11 9 16 16 H 1.48500 * 109.47008 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47206 * 119.99575 * 15 13 11 18 18 H 1.48504 * 109.47273 * 240.00309 * 15 13 11 19 19 C 1.50695 * 109.47160 * 204.99933 * 9 8 2 20 20 C 1.38236 * 119.99911 * 330.59942 * 19 9 8 21 21 C 1.38233 * 119.99904 * 179.97438 * 20 19 9 22 22 C 1.38238 * 120.00343 * 359.97438 * 21 20 19 23 23 C 1.38239 * 119.99644 * 359.96078 * 22 21 20 24 24 C 1.38235 * 119.99991 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47236 * 60.00515 * 1 2 3 26 26 H 1.09007 * 109.47354 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47440 * 299.99760 * 1 2 3 28 28 H 1.09004 * 109.46865 * 304.99970 * 4 2 1 29 29 H 1.09007 * 109.47558 * 64.99758 * 4 2 1 30 30 H 1.08997 * 115.54731 * 29.41522 * 5 4 2 31 31 H 1.08998 * 117.49424 * 0.02562 * 6 5 4 32 32 H 1.08994 * 117.49736 * 145.01304 * 6 5 4 33 33 H 1.09006 * 117.49505 * 214.97728 * 7 5 4 34 34 H 1.09001 * 117.49899 * 359.97195 * 7 5 4 35 35 H 1.00907 * 110.99437 * 208.95335 * 8 2 1 36 36 H 0.97006 * 120.00073 * 180.02562 * 14 13 11 37 37 H 1.07995 * 120.00224 * 0.25401 * 20 19 9 38 38 H 1.07997 * 119.99913 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.00395 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99612 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.99891 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.3696 -1.9110 1.2176 7 6 4.2609 -1.1747 2.5552 8 7 2.0196 -0.6926 -1.1995 9 6 2.0825 0.2225 -2.3469 10 1 1.2576 0.9328 -2.2907 11 6 3.3911 0.9694 -2.3227 12 1 3.3970 2.0492 -2.3424 13 6 4.5809 0.2742 -2.2754 14 7 4.5759 -1.0405 -2.3057 15 14 6.1999 1.1998 -2.1684 16 1 5.9345 2.6608 -2.1498 17 1 6.9118 0.8097 -0.9250 18 1 7.0404 0.8649 -3.3460 19 6 1.9787 -0.5677 -3.6258 20 6 2.4431 -1.8688 -3.6740 21 6 2.3474 -2.5939 -4.8471 22 6 1.7867 -2.0180 -5.9718 23 6 1.3210 -0.7174 -5.9232 24 6 1.4165 0.0076 -4.7501 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7515 -1.7716 1.2056 30 1 3.9925 0.2792 0.8572 31 1 3.8127 -2.8416 1.1080 32 1 5.3270 -1.8721 0.6981 33 1 5.1469 -0.6517 2.9152 34 1 3.6325 -1.6206 3.3262 35 1 2.9173 -1.1206 -1.0287 36 1 5.4129 -1.5297 -2.2721 37 1 2.8767 -2.3204 -2.7940 38 1 2.7106 -3.6102 -4.8848 39 1 1.7123 -2.5843 -6.8884 40 1 0.8834 -0.2674 -6.8021 41 1 1.0531 1.0239 -4.7122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070102112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:53 Heat of formation + Delta-G solvation = 30.587263 kcal Electronic energy + Delta-G solvation = -20144.882282 eV Core-core repulsion = 17410.417068 eV Total energy + Delta-G solvation = -2734.465213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.98853 -38.89927 -36.95456 -34.75018 -32.60205 -31.33091 -30.01713 -28.23194 -27.76876 -24.46650 -23.14096 -22.99373 -21.80718 -21.38011 -20.83005 -18.34261 -17.50979 -16.94794 -16.45262 -16.07202 -15.58814 -15.44267 -15.09911 -14.83480 -14.25319 -13.88648 -13.66267 -13.53157 -13.22756 -13.21229 -12.92900 -12.87464 -12.63804 -12.34427 -12.29221 -12.09905 -11.92436 -11.84471 -11.72707 -11.30842 -11.17523 -10.80833 -10.65283 -10.52179 -9.39781 -9.07334 -8.71146 -7.89141 -6.24134 0.91599 1.06145 1.31594 1.37943 1.44095 2.38833 3.02341 3.13450 3.42936 3.80518 3.95485 4.11329 4.21369 4.38084 4.40422 4.42227 4.56576 4.63611 4.77530 4.79188 4.81429 4.84217 4.99237 5.01117 5.07411 5.09642 5.17576 5.27294 5.30572 5.34349 5.39605 5.50990 5.55573 5.62740 5.69806 5.75793 5.95899 6.14368 6.16849 6.43293 6.57516 6.66326 7.07967 7.40463 7.58583 8.88622 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.008836 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.140933 B = 3168.241751 C = 3956.374692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.083 3.917 3 H 0.013 0.987 4 C -0.074 4.074 5 C -0.156 4.156 6 C -0.171 4.171 7 C -0.166 4.166 8 N -0.686 5.686 9 C 0.242 3.758 10 H 0.019 0.981 11 C -0.559 4.559 12 H 0.034 0.966 13 C 0.055 3.945 14 N -0.868 5.868 15 Si 0.925 3.075 16 H -0.282 1.282 17 H -0.276 1.276 18 H -0.286 1.286 19 C -0.043 4.043 20 C -0.068 4.068 21 C -0.156 4.156 22 C -0.150 4.150 23 C -0.142 4.142 24 C -0.154 4.154 25 H 0.034 0.966 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.367 0.633 36 H 0.264 0.736 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 -2.697 3.925 6.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.028 4.028 3 H 0.031 0.969 4 C -0.112 4.112 5 C -0.174 4.174 6 C -0.208 4.208 7 C -0.203 4.203 8 N -0.323 5.323 9 C 0.132 3.868 10 H 0.038 0.962 11 C -0.598 4.598 12 H 0.053 0.947 13 C -0.148 4.148 14 N -0.505 5.505 15 Si 0.752 3.248 16 H -0.207 1.207 17 H -0.202 1.202 18 H -0.212 1.212 19 C -0.044 4.044 20 C -0.086 4.086 21 C -0.174 4.174 22 C -0.168 4.168 23 C -0.160 4.160 24 C -0.173 4.173 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.193 0.807 36 H 0.074 0.926 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.178 -3.118 3.790 6.445 hybrid contribution 2.106 1.438 -0.108 2.552 sum -2.072 -1.681 3.682 4.547 Atomic orbital electron populations 1.21726 0.94797 1.01512 1.00554 1.21392 0.95240 0.95247 0.90893 0.96927 1.21242 0.91860 1.00816 0.97283 1.22152 0.95202 0.97429 1.02648 1.22815 1.01413 0.96031 1.00561 1.23048 1.02673 1.03589 0.90982 1.61027 1.36288 1.31701 1.03325 1.17977 0.92812 0.88938 0.87048 0.96239 1.21771 0.92859 0.92538 1.52661 0.94720 1.25239 1.00075 0.95521 0.93994 1.69722 1.26848 1.05391 1.48515 0.86036 0.81956 0.79122 0.77641 1.20707 1.20209 1.21189 1.20313 0.93617 0.94193 0.96270 1.21201 0.95194 0.94045 0.98196 1.21368 1.01726 1.00191 0.94082 1.21156 1.01289 0.95818 0.98541 1.21117 1.02148 0.95205 0.97486 1.21055 1.02631 0.99519 0.94057 0.94634 0.92535 0.91425 0.90026 0.91532 0.91177 0.88679 0.90953 0.88954 0.87003 0.80718 0.92575 0.85641 0.86188 0.84815 0.84969 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.40 71.98 0.68 -3.59 16 2 C 0.08 3.23 2.41 44.91 0.11 3.34 16 3 H 0.01 0.56 7.64 -2.39 -0.02 0.54 16 4 C -0.07 -2.45 5.09 30.59 0.16 -2.30 16 5 C -0.16 -5.48 4.69 -10.79 -0.05 -5.53 16 6 C -0.17 -5.74 9.95 30.62 0.30 -5.43 16 7 C -0.17 -4.65 10.25 30.62 0.31 -4.34 16 8 N -0.69 -30.85 5.19 -477.21 -2.48 -33.33 16 9 C 0.24 11.88 2.32 43.42 0.10 11.98 16 10 H 0.02 0.97 7.06 -2.38 -0.02 0.96 16 11 C -0.56 -29.68 8.52 25.60 0.22 -29.46 16 12 H 0.03 1.92 7.81 -2.91 -0.02 1.89 16 13 C 0.05 2.81 5.05 84.66 0.43 3.24 16 14 N -0.87 -43.41 7.99 21.45 0.17 -43.23 16 15 Si 0.92 42.23 29.54 68.60 2.03 44.25 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 19 C -0.04 -2.05 4.79 -19.87 -0.10 -2.15 16 20 C -0.07 -3.15 7.65 22.27 0.17 -2.98 16 21 C -0.16 -6.27 10.05 22.27 0.22 -6.05 16 22 C -0.15 -5.46 10.05 22.27 0.22 -5.23 16 23 C -0.14 -5.30 10.05 22.27 0.22 -5.08 16 24 C -0.15 -6.70 9.70 22.27 0.22 -6.48 16 25 H 0.03 1.25 7.43 -2.39 -0.02 1.24 16 26 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.07 2.15 7.88 -2.38 -0.02 2.13 16 30 H 0.07 2.96 8.08 -2.39 -0.02 2.94 16 31 H 0.09 3.05 8.03 -2.39 -0.02 3.03 16 32 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.37 17.10 3.98 -89.69 -0.36 16.75 16 36 H 0.26 12.83 8.31 -92.70 -0.77 12.06 16 37 H 0.13 6.21 5.61 -2.91 -0.02 6.20 16 38 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 39 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 40 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 41 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -54.70 326.91 3.57 -51.13 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: 0.63 Total: 41.24 kcal Atomic # 6 Polarization: -63.27 SS G_CDS: 3.22 Total: -60.06 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -2.31 Total: -76.56 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -54.70 3.57 -51.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070102112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.714 kcal (2) G-P(sol) polarization free energy of solvation -54.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds