Wall clock time and date at job start Mon Mar 30 2020 06:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47267 * 2 1 4 4 C 1.53002 * 109.47059 * 119.99708 * 2 1 3 5 5 C 1.52997 * 109.47185 * 184.99669 * 4 2 1 6 6 C 1.52994 * 117.50194 * 243.62409 * 5 4 2 7 7 C 1.53004 * 60.00319 * 252.51253 * 6 5 4 8 8 N 1.46895 * 109.47168 * 239.99781 * 2 1 3 9 9 C 1.46897 * 111.00241 * 85.00052 * 8 2 1 10 10 H 1.09000 * 109.46887 * 35.00102 * 9 8 2 11 11 C 1.50700 * 109.47400 * 275.00279 * 9 8 2 12 12 H 1.08005 * 119.99373 * 326.83521 * 11 9 8 13 13 C 1.37871 * 120.00404 * 146.83121 * 11 9 8 14 14 N 1.31514 * 119.99934 * 0.74486 * 13 11 9 15 15 Si 1.86796 * 120.00244 * 180.74540 * 13 11 9 16 16 H 1.48506 * 109.47236 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.47138 * 299.99966 * 15 13 11 18 18 H 1.48504 * 109.47110 * 59.99862 * 15 13 11 19 19 C 1.50695 * 109.47394 * 154.99859 * 9 8 2 20 20 C 1.38237 * 119.99775 * 46.35152 * 19 9 8 21 21 C 1.38235 * 120.00016 * 179.80708 * 20 19 9 22 22 C 1.38238 * 119.99813 * 0.40173 * 21 20 19 23 23 C 1.38235 * 120.00176 * 359.84920 * 22 21 20 24 24 C 1.38236 * 120.00018 * 226.62488 * 19 9 8 25 25 H 1.09004 * 109.47587 * 59.99730 * 1 2 3 26 26 H 1.08999 * 109.47505 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47354 * 300.00388 * 1 2 3 28 28 H 1.09004 * 109.47482 * 305.00242 * 4 2 1 29 29 H 1.08999 * 109.46727 * 64.99780 * 4 2 1 30 30 H 1.08999 * 115.54865 * 29.33604 * 5 4 2 31 31 H 1.08997 * 117.49894 * 359.97438 * 6 5 4 32 32 H 1.08999 * 117.50131 * 145.02022 * 6 5 4 33 33 H 1.08997 * 117.49610 * 252.51760 * 7 6 5 34 34 H 1.08992 * 117.50381 * 107.48480 * 7 6 5 35 35 H 1.00904 * 110.99876 * 321.04412 * 8 2 1 36 36 H 0.97003 * 120.00226 * 1.33981 * 14 13 11 37 37 H 1.08003 * 120.00067 * 359.97438 * 20 19 9 38 38 H 1.07994 * 120.00348 * 180.22748 * 21 20 19 39 39 H 1.08002 * 120.00019 * 179.83163 * 22 21 20 40 40 H 1.07994 * 120.00119 * 179.97438 * 23 22 21 41 41 H 1.07990 * 120.00077 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6133 1.3137 6 6 4.3694 -1.9112 1.2205 7 6 4.2607 -1.1728 2.5562 8 7 2.0196 -0.6925 -1.1994 9 6 2.0824 0.2225 -2.3469 10 1 2.3648 1.2175 -2.0030 11 6 0.7324 0.2858 -3.0135 12 1 0.0968 -0.5874 -3.0298 13 6 0.3085 1.4581 -3.6023 14 7 1.0884 2.5170 -3.5951 15 14 -1.3736 1.5426 -4.4103 16 1 -1.5882 2.9030 -4.9658 17 1 -1.4468 0.5436 -5.5067 18 1 -2.4227 1.2481 -3.4014 19 6 3.1065 -0.2777 -3.3328 20 6 3.1246 -1.6121 -3.6934 21 6 4.0614 -2.0702 -4.6008 22 6 4.9855 -1.1955 -5.1413 23 6 4.9707 0.1378 -4.7767 24 6 4.0314 0.5967 -3.8722 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6053 -0.2617 2.1371 29 1 1.7515 -1.7714 1.2057 30 1 3.9927 0.2785 0.8559 31 1 3.8125 -2.8421 1.1138 32 1 5.3269 -1.8736 0.7011 33 1 5.1466 -0.6493 2.9153 34 1 3.6322 -1.6177 3.3276 35 1 1.4495 -1.4980 -1.4099 36 1 1.9696 2.4676 -3.1927 37 1 2.4051 -2.2962 -3.2682 38 1 4.0733 -3.1119 -4.8854 39 1 5.7191 -1.5540 -5.8481 40 1 5.6928 0.8210 -5.1986 41 1 4.0198 1.6383 -3.5874 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070102114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:59 Heat of formation + Delta-G solvation = 31.550548 kcal Electronic energy + Delta-G solvation = -19689.408846 eV Core-core repulsion = 16954.985404 eV Total energy + Delta-G solvation = -2734.423442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.60445 -37.61204 -35.81860 -33.21537 -31.13477 -30.04699 -28.72999 -26.77679 -25.34231 -22.94825 -22.06106 -21.71124 -20.55821 -20.03501 -19.87729 -17.10742 -16.12262 -15.38136 -14.75753 -14.48701 -14.09715 -13.82644 -13.64163 -13.48825 -13.06729 -12.60741 -12.37598 -12.12717 -12.03639 -11.85723 -11.59135 -11.25840 -11.09238 -10.89310 -10.67296 -10.56034 -10.34639 -10.21528 -10.12753 -9.99522 -9.73751 -9.45869 -9.11940 -8.51786 -8.08087 -7.77035 -7.23095 -6.44094 -4.21135 2.25532 2.32853 3.35475 3.38048 3.55254 4.17456 4.41410 4.70263 4.99238 5.15669 5.25611 5.26531 5.40173 5.63555 5.68388 5.72965 5.77217 5.82398 5.85051 6.05641 6.11692 6.19793 6.21920 6.24232 6.34288 6.37040 6.39147 6.48165 6.60790 6.62336 6.70182 6.83136 6.93049 6.99519 7.15580 7.27376 7.39415 7.62991 7.86394 7.91804 8.00281 8.41012 8.52075 8.70639 9.49310 10.88236 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.008717 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.418739 B = 3211.258951 C = 4751.555833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.100 3.900 3 H 0.066 0.934 4 C -0.077 4.077 5 C -0.119 4.119 6 C -0.167 4.167 7 C -0.201 4.201 8 N -0.673 5.673 9 C 0.223 3.777 10 H 0.049 0.951 11 C -0.609 4.609 12 H 0.052 0.948 13 C 0.029 3.971 14 N -0.900 5.900 15 Si 1.061 2.939 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.287 1.287 19 C -0.012 4.012 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.155 4.155 23 C -0.124 4.124 24 C -0.127 4.127 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.327 0.673 36 H 0.271 0.729 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.064 -6.276 5.811 9.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.010 4.010 3 H 0.084 0.916 4 C -0.115 4.115 5 C -0.137 4.137 6 C -0.204 4.204 7 C -0.238 4.238 8 N -0.301 5.301 9 C 0.115 3.885 10 H 0.067 0.933 11 C -0.647 4.647 12 H 0.071 0.929 13 C -0.177 4.177 14 N -0.535 5.535 15 Si 0.889 3.111 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.214 1.214 19 C -0.013 4.013 20 C -0.124 4.124 21 C -0.148 4.148 22 C -0.173 4.173 23 C -0.143 4.143 24 C -0.145 4.145 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.144 0.856 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.700 -5.156 5.188 8.197 hybrid contribution 0.089 -0.968 0.331 1.027 sum 3.789 -6.125 5.519 9.074 Atomic orbital electron populations 1.22565 0.97567 1.01066 1.02674 1.21302 0.92440 0.97118 0.90171 0.91598 1.21245 0.92522 1.00430 0.97317 1.22086 0.94621 0.97682 0.99336 1.22814 1.01909 0.96492 0.99195 1.22997 1.03064 1.05861 0.91858 1.60891 1.55275 1.09765 1.04174 1.18419 0.92109 0.91721 0.86282 0.93304 1.22411 1.01100 1.00056 1.41180 0.92935 1.25742 1.04461 0.92303 0.95234 1.70832 1.10652 1.30686 1.41342 0.83652 0.74726 0.76259 0.76475 1.20706 1.21390 1.21398 1.20509 0.92208 0.92558 0.96070 1.20757 0.98219 0.95830 0.97625 1.20970 0.96731 0.98611 0.98467 1.20786 1.00373 0.94024 1.02149 1.20935 0.99196 0.95434 0.98696 1.20976 0.95580 0.99378 0.98592 0.89591 0.93917 0.94341 0.92441 0.92446 0.88324 0.89360 0.89583 0.89670 0.89570 0.85602 0.91686 0.87270 0.87638 0.87713 0.87562 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.92 37.15 0.33 -2.91 16 2 C 0.10 1.81 2.54 -67.72 -0.17 1.64 16 3 H 0.07 1.32 7.43 -51.93 -0.39 0.93 16 4 C -0.08 -1.17 5.17 -26.73 -0.14 -1.31 16 5 C -0.12 -1.78 5.48 -90.62 -0.50 -2.27 16 6 C -0.17 -2.33 10.18 -26.73 -0.27 -2.60 16 7 C -0.20 -2.55 10.25 -26.73 -0.27 -2.82 16 8 N -0.67 -13.19 5.38 -102.19 -0.55 -13.74 16 9 C 0.22 5.11 2.05 -70.02 -0.14 4.96 16 10 H 0.05 1.24 5.48 -51.93 -0.28 0.96 16 11 C -0.61 -15.33 6.05 -34.44 -0.21 -15.53 16 12 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 13 C 0.03 0.78 5.46 -17.82 -0.10 0.68 16 14 N -0.90 -25.34 13.62 55.43 0.75 -24.59 16 15 Si 1.06 24.16 29.90 -169.99 -5.08 19.07 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.01 -0.27 4.93 -104.63 -0.52 -0.79 16 20 C -0.11 -2.17 9.26 -39.58 -0.37 -2.54 16 21 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 22 C -0.16 -2.77 10.05 -39.58 -0.40 -3.17 16 23 C -0.12 -2.37 10.05 -39.58 -0.40 -2.77 16 24 C -0.13 -2.74 9.58 -39.58 -0.38 -3.12 16 25 H 0.09 1.84 6.19 -51.93 -0.32 1.52 16 26 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.85 7.88 -51.93 -0.41 0.44 16 30 H 0.10 1.62 8.07 -51.93 -0.42 1.20 16 31 H 0.09 1.21 8.03 -51.93 -0.42 0.79 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.33 6.43 7.62 -39.29 -0.30 6.13 16 36 H 0.27 7.55 5.88 -40.82 -0.24 7.31 16 37 H 0.11 2.15 7.48 -52.48 -0.39 1.76 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.11 2.41 7.43 -52.49 -0.39 2.02 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -26.70 332.48 -10.36 -37.06 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -6.57 Total: 12.51 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: -3.93 Total: -35.33 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.21 Total: -38.32 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.08 Total: 19.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.70 -10.36 -37.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070102114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.607 kcal (2) G-P(sol) polarization free energy of solvation -26.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds