Wall clock time and date at job start Mon Mar 30 2020 06:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47267 * 2 1 4 4 C 1.53002 * 109.47059 * 119.99708 * 2 1 3 5 5 C 1.52997 * 109.47185 * 184.99669 * 4 2 1 6 6 C 1.52994 * 117.50194 * 243.62409 * 5 4 2 7 7 C 1.53004 * 60.00319 * 252.51253 * 6 5 4 8 8 N 1.46895 * 109.47168 * 239.99781 * 2 1 3 9 9 C 1.46897 * 111.00241 * 85.00052 * 8 2 1 10 10 H 1.09000 * 109.46887 * 35.00102 * 9 8 2 11 11 C 1.50700 * 109.47400 * 275.00279 * 9 8 2 12 12 H 1.08005 * 119.99373 * 326.83521 * 11 9 8 13 13 C 1.37871 * 120.00404 * 146.83121 * 11 9 8 14 14 N 1.31514 * 119.99934 * 0.74486 * 13 11 9 15 15 Si 1.86796 * 120.00244 * 180.74540 * 13 11 9 16 16 H 1.48506 * 109.47236 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.47138 * 299.99966 * 15 13 11 18 18 H 1.48504 * 109.47110 * 59.99862 * 15 13 11 19 19 C 1.50695 * 109.47394 * 154.99859 * 9 8 2 20 20 C 1.38237 * 119.99775 * 46.35152 * 19 9 8 21 21 C 1.38235 * 120.00016 * 179.80708 * 20 19 9 22 22 C 1.38238 * 119.99813 * 0.40173 * 21 20 19 23 23 C 1.38235 * 120.00176 * 359.84920 * 22 21 20 24 24 C 1.38236 * 120.00018 * 226.62488 * 19 9 8 25 25 H 1.09004 * 109.47587 * 59.99730 * 1 2 3 26 26 H 1.08999 * 109.47505 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47354 * 300.00388 * 1 2 3 28 28 H 1.09004 * 109.47482 * 305.00242 * 4 2 1 29 29 H 1.08999 * 109.46727 * 64.99780 * 4 2 1 30 30 H 1.08999 * 115.54865 * 29.33604 * 5 4 2 31 31 H 1.08997 * 117.49894 * 359.97438 * 6 5 4 32 32 H 1.08999 * 117.50131 * 145.02022 * 6 5 4 33 33 H 1.08997 * 117.49610 * 252.51760 * 7 6 5 34 34 H 1.08992 * 117.50381 * 107.48480 * 7 6 5 35 35 H 1.00904 * 110.99876 * 321.04412 * 8 2 1 36 36 H 0.97003 * 120.00226 * 1.33981 * 14 13 11 37 37 H 1.08003 * 120.00067 * 359.97438 * 20 19 9 38 38 H 1.07994 * 120.00348 * 180.22748 * 21 20 19 39 39 H 1.08002 * 120.00019 * 179.83163 * 22 21 20 40 40 H 1.07994 * 120.00119 * 179.97438 * 23 22 21 41 41 H 1.07990 * 120.00077 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6133 1.3137 6 6 4.3694 -1.9112 1.2205 7 6 4.2607 -1.1728 2.5562 8 7 2.0196 -0.6925 -1.1994 9 6 2.0824 0.2225 -2.3469 10 1 2.3648 1.2175 -2.0030 11 6 0.7324 0.2858 -3.0135 12 1 0.0968 -0.5874 -3.0298 13 6 0.3085 1.4581 -3.6023 14 7 1.0884 2.5170 -3.5951 15 14 -1.3736 1.5426 -4.4103 16 1 -1.5882 2.9030 -4.9658 17 1 -1.4468 0.5436 -5.5067 18 1 -2.4227 1.2481 -3.4014 19 6 3.1065 -0.2777 -3.3328 20 6 3.1246 -1.6121 -3.6934 21 6 4.0614 -2.0702 -4.6008 22 6 4.9855 -1.1955 -5.1413 23 6 4.9707 0.1378 -4.7767 24 6 4.0314 0.5967 -3.8722 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6053 -0.2617 2.1371 29 1 1.7515 -1.7714 1.2057 30 1 3.9927 0.2785 0.8559 31 1 3.8125 -2.8421 1.1138 32 1 5.3269 -1.8736 0.7011 33 1 5.1466 -0.6493 2.9153 34 1 3.6322 -1.6177 3.3276 35 1 1.4495 -1.4980 -1.4099 36 1 1.9696 2.4676 -3.1927 37 1 2.4051 -2.2962 -3.2682 38 1 4.0733 -3.1119 -4.8854 39 1 5.7191 -1.5540 -5.8481 40 1 5.6928 0.8210 -5.1986 41 1 4.0198 1.6383 -3.5874 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070102114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:58 Heat of formation + Delta-G solvation = 19.107676 kcal Electronic energy + Delta-G solvation = -19689.948409 eV Core-core repulsion = 16954.985404 eV Total energy + Delta-G solvation = -2734.963006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.19098 -38.92053 -37.28923 -34.97984 -32.85009 -31.59424 -30.25377 -28.16525 -27.20645 -24.72490 -23.28551 -23.10789 -21.97789 -21.67229 -21.19388 -19.02444 -17.62640 -16.71015 -16.31065 -15.97427 -15.68569 -15.48349 -15.14317 -14.96189 -14.69482 -14.18415 -14.04315 -13.64925 -13.52393 -13.30843 -13.03771 -12.77758 -12.47895 -12.36411 -12.27042 -12.03319 -11.98919 -11.86043 -11.67922 -11.58100 -11.11800 -10.87207 -10.62457 -10.48583 -9.63463 -9.36528 -8.98958 -8.46095 -6.28512 0.68979 0.77709 1.49475 1.55501 1.73164 2.53661 3.06051 3.09631 3.27056 3.63923 3.79085 4.13576 4.16444 4.21839 4.26691 4.33453 4.38230 4.41506 4.56709 4.68546 4.76662 4.77985 4.83956 4.89378 4.93398 4.96628 5.05732 5.12826 5.19771 5.23650 5.33137 5.34984 5.41021 5.51171 5.59853 5.74559 5.79976 5.88306 6.03437 6.11224 6.35843 6.57081 6.60960 6.87749 7.49094 8.79511 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.008717 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.418739 B = 3211.258951 C = 4751.555833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 H 0.035 0.965 4 C -0.063 4.063 5 C -0.142 4.142 6 C -0.170 4.170 7 C -0.175 4.175 8 N -0.661 5.661 9 C 0.233 3.767 10 H 0.012 0.988 11 C -0.599 4.599 12 H 0.048 0.952 13 C -0.019 4.019 14 N -0.932 5.932 15 Si 1.100 2.900 16 H -0.289 1.289 17 H -0.277 1.277 18 H -0.271 1.271 19 C -0.040 4.040 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.147 4.147 23 C -0.127 4.127 24 C -0.154 4.154 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.329 0.671 36 H 0.260 0.740 37 H 0.113 0.887 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -8.772 5.977 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 H 0.054 0.946 4 C -0.101 4.101 5 C -0.160 4.160 6 C -0.207 4.207 7 C -0.212 4.212 8 N -0.289 5.289 9 C 0.124 3.876 10 H 0.030 0.970 11 C -0.638 4.638 12 H 0.066 0.934 13 C -0.220 4.220 14 N -0.570 5.570 15 Si 0.924 3.076 16 H -0.215 1.215 17 H -0.203 1.203 18 H -0.196 1.196 19 C -0.041 4.041 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.165 4.165 23 C -0.145 4.145 24 C -0.172 4.172 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.146 0.854 36 H 0.071 0.929 37 H 0.131 0.869 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.149 0.851 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.116 -7.675 5.373 10.233 hybrid contribution 0.053 -0.234 0.298 0.383 sum 4.169 -7.909 5.671 10.588 Atomic orbital electron populations 1.22440 0.97253 1.01701 1.01712 1.21352 0.92669 0.95993 0.91087 0.94621 1.21104 0.92677 1.00489 0.95860 1.21979 0.94591 0.97483 1.01989 1.22850 1.01475 0.96048 1.00351 1.23065 1.02877 1.04062 0.91202 1.60901 1.55370 1.09149 1.03526 1.18148 0.91565 0.90656 0.87254 0.97034 1.22598 1.02025 0.99375 1.39848 0.93352 1.26871 1.06833 0.92391 0.95894 1.70915 1.10782 1.31728 1.43562 0.83137 0.72119 0.75986 0.76389 1.21510 1.20252 1.19598 1.20479 0.93025 0.93882 0.96685 1.20885 0.99304 0.94907 0.98649 1.21386 0.95426 1.00532 0.96944 1.21256 1.00452 0.93083 1.01713 1.21252 0.98667 0.96903 0.97688 1.21016 0.97277 0.98541 1.00410 0.93385 0.92348 0.92402 0.90823 0.91430 0.90872 0.88764 0.90051 0.88635 0.87784 0.85426 0.92893 0.86936 0.84034 0.83690 0.85106 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.22 8.92 71.98 0.64 -5.58 16 2 C 0.10 3.68 2.54 44.92 0.11 3.80 16 3 H 0.04 1.53 7.43 -2.39 -0.02 1.51 16 4 C -0.06 -1.86 5.17 30.59 0.16 -1.70 16 5 C -0.14 -4.18 5.48 -10.79 -0.06 -4.24 16 6 C -0.17 -4.51 10.18 30.59 0.31 -4.20 16 7 C -0.18 -4.05 10.25 30.60 0.31 -3.73 16 8 N -0.66 -26.64 5.38 -477.21 -2.57 -29.21 16 9 C 0.23 11.21 2.05 43.42 0.09 11.30 16 10 H 0.01 0.64 5.48 -2.39 -0.01 0.63 16 11 C -0.60 -31.19 6.05 25.60 0.15 -31.04 16 12 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 13 C -0.02 -1.07 5.46 84.65 0.46 -0.60 16 14 N -0.93 -55.25 13.62 21.44 0.29 -54.96 16 15 Si 1.10 49.56 29.90 68.60 2.05 51.61 16 16 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 19 C -0.04 -1.81 4.93 -19.87 -0.10 -1.91 16 20 C -0.12 -4.79 9.26 22.27 0.21 -4.58 16 21 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16 22 C -0.15 -4.78 10.05 22.27 0.22 -4.56 16 23 C -0.13 -4.70 10.05 22.27 0.22 -4.48 16 24 C -0.15 -6.89 9.58 22.27 0.21 -6.67 16 25 H 0.05 2.10 6.19 -2.38 -0.01 2.08 16 26 H 0.06 1.89 8.13 -2.39 -0.02 1.88 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.07 1.86 7.88 -2.39 -0.02 1.84 16 30 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 31 H 0.09 2.38 8.03 -2.39 -0.02 2.36 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.33 12.99 7.62 -89.69 -0.68 12.30 16 36 H 0.26 15.58 5.88 -92.71 -0.55 15.04 16 37 H 0.11 4.34 7.48 -2.91 -0.02 4.32 16 38 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 40 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.09 4.21 7.43 -2.92 -0.02 4.19 16 Total: -1.00 -60.23 332.48 3.49 -56.74 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: 0.54 Total: 38.01 kcal Atomic # 6 Polarization: -65.37 SS G_CDS: 3.18 Total: -62.19 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.27 Total: -84.16 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.05 Total: 51.61 kcal Total: -60.23 3.49 -56.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070102114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.846 kcal (2) G-P(sol) polarization free energy of solvation -60.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds