Wall clock time and date at job start Mon Mar 30 2020 06:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47456 * 2 1 4 4 C 1.53003 * 109.47087 * 240.00232 * 2 1 3 5 5 C 1.52997 * 109.47144 * 175.00002 * 4 2 1 6 6 C 1.53000 * 117.50297 * 243.74907 * 5 4 2 7 7 C 1.53007 * 117.50021 * 175.08766 * 5 4 2 8 8 N 1.46898 * 109.47199 * 120.00736 * 2 1 3 9 9 C 1.46897 * 110.99811 * 275.00014 * 8 2 1 10 10 H 1.08996 * 109.47704 * 34.99520 * 9 8 2 11 11 C 1.50705 * 109.47052 * 274.99502 * 9 8 2 12 12 H 1.07999 * 119.99683 * 324.77055 * 11 9 8 13 13 C 1.37875 * 119.99859 * 144.76120 * 11 9 8 14 14 N 1.31510 * 120.00370 * 5.11045 * 13 11 9 15 15 Si 1.86800 * 119.99935 * 185.10874 * 13 11 9 16 16 H 1.48498 * 109.47316 * 90.00169 * 15 13 11 17 17 H 1.48503 * 109.47097 * 210.00385 * 15 13 11 18 18 H 1.48501 * 109.46836 * 329.99909 * 15 13 11 19 19 C 1.50698 * 109.47140 * 154.99877 * 9 8 2 20 20 C 1.38231 * 120.00217 * 45.37304 * 19 9 8 21 21 C 1.38239 * 120.00199 * 179.78911 * 20 19 9 22 22 C 1.38238 * 119.99827 * 0.43762 * 21 20 19 23 23 C 1.38238 * 119.99723 * 359.81769 * 22 21 20 24 24 C 1.38227 * 120.00206 * 359.96896 * 23 22 21 25 25 H 1.08992 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46834 * 299.99432 * 1 2 3 27 27 H 1.09000 * 109.46839 * 59.99534 * 1 2 3 28 28 H 1.08997 * 109.47382 * 295.00155 * 4 2 1 29 29 H 1.09002 * 109.47066 * 55.00350 * 4 2 1 30 30 H 1.08997 * 115.55348 * 29.42407 * 5 4 2 31 31 H 1.09000 * 117.49546 * 359.97438 * 6 5 4 32 32 H 1.08998 * 117.50321 * 145.01911 * 6 5 4 33 33 H 1.08993 * 117.49926 * 214.98291 * 7 5 4 34 34 H 1.09003 * 117.49587 * 0.02562 * 7 5 4 35 35 H 1.00898 * 110.99698 * 38.94883 * 8 2 1 36 36 H 0.96997 * 120.00344 * 180.02562 * 14 13 11 37 37 H 1.07999 * 119.99931 * 359.97438 * 20 19 9 38 38 H 1.07995 * 120.00066 * 180.26898 * 21 20 19 39 39 H 1.07995 * 119.99815 * 179.83048 * 22 21 20 40 40 H 1.08001 * 119.99317 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.00411 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.1697 0.1539 -2.4912 7 6 4.2801 -1.3718 -2.4336 8 7 2.0197 -0.6926 1.1993 9 6 2.0825 0.2223 2.3468 10 1 1.2577 0.9327 2.2908 11 6 3.3912 0.9692 2.3228 12 1 4.2873 0.4773 1.9743 13 6 3.4445 2.2804 2.7456 14 7 2.3774 2.8483 3.2634 15 14 5.0326 3.2504 2.5829 16 1 5.0621 3.9344 1.2651 17 1 5.1081 4.2620 3.6674 18 1 6.1901 2.3259 2.6868 19 6 1.9786 -0.5680 3.6257 20 6 2.7202 -1.7234 3.7864 21 6 2.6282 -2.4461 4.9613 22 6 1.7877 -2.0181 5.9719 23 6 1.0421 -0.8655 5.8091 24 6 1.1375 -0.1406 4.6361 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7517 -1.7714 -1.2057 29 1 1.6054 -0.2616 -2.1370 30 1 4.0721 -0.5403 -0.3518 31 1 3.4812 0.5814 -3.2203 32 1 5.0749 0.7314 -2.3040 33 1 5.2579 -1.7974 -2.2084 34 1 3.6642 -1.9474 -3.1247 35 1 1.4495 -1.4980 1.4098 36 1 2.4147 3.7709 3.5605 37 1 3.3738 -2.0600 2.9952 38 1 3.2109 -3.3464 5.0885 39 1 1.7138 -2.5841 6.8887 40 1 0.3858 -0.5310 6.5989 41 1 0.5552 0.7602 4.5090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070102115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:01 Heat of formation + Delta-G solvation = 35.030696 kcal Electronic energy + Delta-G solvation = -19573.353823 eV Core-core repulsion = 16839.081292 eV Total energy + Delta-G solvation = -2734.272532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.51768 -37.49037 -35.61151 -33.01804 -31.22795 -29.97045 -28.58057 -26.88391 -25.89134 -22.77712 -22.00363 -21.62756 -20.46991 -19.85623 -19.55756 -16.42623 -16.00450 -15.25926 -14.91745 -14.40920 -14.26462 -14.01204 -13.63353 -13.27541 -12.94338 -12.49988 -12.37851 -12.06170 -11.95105 -11.80488 -11.54132 -11.19662 -11.04572 -10.95402 -10.78588 -10.62842 -10.30720 -10.17567 -10.02931 -9.67359 -9.60302 -9.51337 -9.31382 -8.52883 -8.01774 -7.66750 -7.21736 -6.05225 -4.08038 2.31797 2.34350 3.29452 3.36197 3.39962 4.28394 4.39437 4.73595 5.10192 5.22505 5.29488 5.39630 5.46491 5.68059 5.78384 5.78936 5.80049 5.87804 5.94867 6.02765 6.05387 6.21573 6.28506 6.30775 6.38605 6.45254 6.46857 6.50470 6.56428 6.74349 6.86518 6.95144 7.02447 7.07069 7.31423 7.34984 7.41788 7.75782 7.86142 7.94215 8.19710 8.25319 8.74795 9.04220 9.55476 10.99536 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.008116 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.539203 B = 3449.049648 C = 4486.293084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.093 3.907 3 H 0.086 0.914 4 C -0.072 4.072 5 C -0.122 4.122 6 C -0.190 4.190 7 C -0.194 4.194 8 N -0.676 5.676 9 C 0.235 3.765 10 H 0.042 0.958 11 C -0.481 4.481 12 H 0.062 0.938 13 C 0.062 3.938 14 N -0.888 5.888 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.273 1.273 19 C -0.035 4.035 20 C -0.111 4.111 21 C -0.135 4.135 22 C -0.153 4.153 23 C -0.132 4.132 24 C -0.111 4.111 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.313 0.687 36 H 0.261 0.739 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.069 -6.904 -4.409 8.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.017 4.017 3 H 0.104 0.896 4 C -0.110 4.110 5 C -0.140 4.140 6 C -0.227 4.227 7 C -0.231 4.231 8 N -0.305 5.305 9 C 0.128 3.872 10 H 0.060 0.940 11 C -0.519 4.519 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.526 5.526 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.037 4.037 20 C -0.129 4.129 21 C -0.153 4.153 22 C -0.171 4.171 23 C -0.150 4.150 24 C -0.129 4.129 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.143 0.857 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.130 0.870 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.458 -6.629 -4.497 8.142 hybrid contribution -0.004 0.844 0.341 0.910 sum -1.462 -5.785 -4.156 7.272 Atomic orbital electron populations 1.22507 0.98909 1.00790 1.01574 1.21367 0.90623 0.99247 0.90488 0.89576 1.21139 0.92929 0.99898 0.96986 1.22379 0.95532 1.01558 0.94483 1.22980 1.03227 0.93874 1.02667 1.22915 1.02094 0.94282 1.03838 1.60845 1.55242 1.09614 1.04825 1.18414 0.98339 0.88486 0.81918 0.94047 1.20981 0.94155 0.95398 1.41387 0.91944 1.25000 0.96337 0.97812 0.94883 1.69916 1.28514 1.13413 1.40780 0.86588 0.83973 0.79837 0.77619 1.20644 1.21446 1.19805 1.20721 0.91842 0.92490 0.98622 1.20992 0.99456 0.95504 0.96976 1.20992 0.99703 0.99962 0.94630 1.20812 0.99609 0.97988 0.98725 1.20980 1.00349 0.96042 0.97611 1.21099 0.99266 0.99045 0.93513 0.93498 0.92591 0.93279 0.92471 0.93065 0.85697 0.89668 0.89489 0.89601 0.89797 0.87036 0.92919 0.86247 0.87681 0.87861 0.87699 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 9.15 37.16 0.34 -2.54 16 2 C 0.09 1.68 2.38 -67.71 -0.16 1.52 16 3 H 0.09 1.84 7.64 -51.93 -0.40 1.44 16 4 C -0.07 -1.11 5.17 -26.73 -0.14 -1.25 16 5 C -0.12 -1.98 5.61 -90.62 -0.51 -2.48 16 6 C -0.19 -2.80 10.18 -26.69 -0.27 -3.07 16 7 C -0.19 -2.69 10.26 -26.69 -0.27 -2.96 16 8 N -0.68 -13.19 5.01 -102.18 -0.51 -13.70 16 9 C 0.24 5.43 2.10 -70.02 -0.15 5.28 16 10 H 0.04 1.07 6.15 -51.93 -0.32 0.75 16 11 C -0.48 -12.44 8.21 -34.44 -0.28 -12.72 16 12 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 13 C 0.06 1.66 5.45 -17.82 -0.10 1.56 16 14 N -0.89 -24.40 12.84 55.43 0.71 -23.69 16 15 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.04 -0.78 4.65 -104.62 -0.49 -1.27 16 20 C -0.11 -2.24 9.07 -39.58 -0.36 -2.60 16 21 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 22 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 23 C -0.13 -2.48 10.05 -39.59 -0.40 -2.88 16 24 C -0.11 -2.38 9.67 -39.58 -0.38 -2.77 16 25 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 26 H 0.06 0.99 7.43 -51.93 -0.39 0.61 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.73 7.88 -51.93 -0.41 0.32 16 30 H 0.13 2.40 7.69 -51.93 -0.40 2.00 16 31 H 0.08 1.16 8.03 -51.93 -0.42 0.74 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.31 5.77 7.87 -39.29 -0.31 5.47 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.12 2.38 7.89 -52.49 -0.41 1.97 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.12 2.65 8.00 -52.48 -0.42 2.23 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -26.37 338.45 -10.50 -36.87 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -6.82 Total: 11.46 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: -3.96 Total: -32.12 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.20 Total: -37.40 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.37 -10.50 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070102115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.902 kcal (2) G-P(sol) polarization free energy of solvation -26.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds