Wall clock time and date at job start Mon Mar 30 2020 06:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47456 * 2 1 4 4 C 1.53003 * 109.47087 * 240.00232 * 2 1 3 5 5 C 1.52997 * 109.47144 * 175.00002 * 4 2 1 6 6 C 1.53000 * 117.50297 * 243.74907 * 5 4 2 7 7 C 1.53007 * 117.50021 * 175.08766 * 5 4 2 8 8 N 1.46898 * 109.47199 * 120.00736 * 2 1 3 9 9 C 1.46897 * 110.99811 * 275.00014 * 8 2 1 10 10 H 1.08996 * 109.47704 * 34.99520 * 9 8 2 11 11 C 1.50705 * 109.47052 * 274.99502 * 9 8 2 12 12 H 1.07999 * 119.99683 * 324.77055 * 11 9 8 13 13 C 1.37875 * 119.99859 * 144.76120 * 11 9 8 14 14 N 1.31510 * 120.00370 * 5.11045 * 13 11 9 15 15 Si 1.86800 * 119.99935 * 185.10874 * 13 11 9 16 16 H 1.48498 * 109.47316 * 90.00169 * 15 13 11 17 17 H 1.48503 * 109.47097 * 210.00385 * 15 13 11 18 18 H 1.48501 * 109.46836 * 329.99909 * 15 13 11 19 19 C 1.50698 * 109.47140 * 154.99877 * 9 8 2 20 20 C 1.38231 * 120.00217 * 45.37304 * 19 9 8 21 21 C 1.38239 * 120.00199 * 179.78911 * 20 19 9 22 22 C 1.38238 * 119.99827 * 0.43762 * 21 20 19 23 23 C 1.38238 * 119.99723 * 359.81769 * 22 21 20 24 24 C 1.38227 * 120.00206 * 359.96896 * 23 22 21 25 25 H 1.08992 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46834 * 299.99432 * 1 2 3 27 27 H 1.09000 * 109.46839 * 59.99534 * 1 2 3 28 28 H 1.08997 * 109.47382 * 295.00155 * 4 2 1 29 29 H 1.09002 * 109.47066 * 55.00350 * 4 2 1 30 30 H 1.08997 * 115.55348 * 29.42407 * 5 4 2 31 31 H 1.09000 * 117.49546 * 359.97438 * 6 5 4 32 32 H 1.08998 * 117.50321 * 145.01911 * 6 5 4 33 33 H 1.08993 * 117.49926 * 214.98291 * 7 5 4 34 34 H 1.09003 * 117.49587 * 0.02562 * 7 5 4 35 35 H 1.00898 * 110.99698 * 38.94883 * 8 2 1 36 36 H 0.96997 * 120.00344 * 180.02562 * 14 13 11 37 37 H 1.07999 * 119.99931 * 359.97438 * 20 19 9 38 38 H 1.07995 * 120.00066 * 180.26898 * 21 20 19 39 39 H 1.07995 * 119.99815 * 179.83048 * 22 21 20 40 40 H 1.08001 * 119.99317 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.00411 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.1697 0.1539 -2.4912 7 6 4.2801 -1.3718 -2.4336 8 7 2.0197 -0.6926 1.1993 9 6 2.0825 0.2223 2.3468 10 1 1.2577 0.9327 2.2908 11 6 3.3912 0.9692 2.3228 12 1 4.2873 0.4773 1.9743 13 6 3.4445 2.2804 2.7456 14 7 2.3774 2.8483 3.2634 15 14 5.0326 3.2504 2.5829 16 1 5.0621 3.9344 1.2651 17 1 5.1081 4.2620 3.6674 18 1 6.1901 2.3259 2.6868 19 6 1.9786 -0.5680 3.6257 20 6 2.7202 -1.7234 3.7864 21 6 2.6282 -2.4461 4.9613 22 6 1.7877 -2.0181 5.9719 23 6 1.0421 -0.8655 5.8091 24 6 1.1375 -0.1406 4.6361 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7517 -1.7714 -1.2057 29 1 1.6054 -0.2616 -2.1370 30 1 4.0721 -0.5403 -0.3518 31 1 3.4812 0.5814 -3.2203 32 1 5.0749 0.7314 -2.3040 33 1 5.2579 -1.7974 -2.2084 34 1 3.6642 -1.9474 -3.1247 35 1 1.4495 -1.4980 1.4098 36 1 2.4147 3.7709 3.5605 37 1 3.3738 -2.0600 2.9952 38 1 3.2109 -3.3464 5.0885 39 1 1.7138 -2.5841 6.8887 40 1 0.3858 -0.5310 6.5989 41 1 0.5552 0.7602 4.5090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070102115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:01 Heat of formation + Delta-G solvation = 22.888246 kcal Electronic energy + Delta-G solvation = -19573.880359 eV Core-core repulsion = 16839.081292 eV Total energy + Delta-G solvation = -2734.799068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.09012 -38.82546 -37.07313 -34.83186 -32.95032 -31.50846 -30.10362 -28.19095 -27.80093 -24.50228 -23.19249 -23.11884 -21.86009 -21.53686 -20.92170 -18.37794 -17.53398 -16.84740 -16.47209 -15.97595 -15.86368 -15.41345 -15.11952 -14.74304 -14.54663 -14.05556 -13.98617 -13.56584 -13.39519 -13.24388 -13.18685 -12.85623 -12.67981 -12.41305 -12.27846 -12.04128 -11.88013 -11.82059 -11.60222 -11.44112 -11.32479 -10.86724 -10.54902 -10.53428 -9.55843 -9.27768 -8.89484 -8.06705 -6.16528 0.76381 0.80219 1.37373 1.38877 1.47584 2.41411 3.07729 3.10945 3.29656 3.73008 3.87997 4.17039 4.24368 4.30062 4.33554 4.41663 4.44630 4.47046 4.62105 4.68709 4.76655 4.85144 4.92739 4.96701 5.01070 5.05226 5.10517 5.13640 5.25354 5.34592 5.39084 5.42724 5.51231 5.56280 5.70354 5.78331 5.82219 5.86199 6.14707 6.24301 6.42016 6.55306 6.99542 7.11785 7.49801 8.94860 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.008116 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.539203 B = 3449.049648 C = 4486.293084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 H 0.043 0.957 4 C -0.059 4.059 5 C -0.147 4.147 6 C -0.192 4.192 7 C -0.170 4.170 8 N -0.670 5.670 9 C 0.248 3.752 10 H 0.003 0.997 11 C -0.484 4.484 12 H 0.048 0.952 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.943 3.057 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.271 1.271 19 C -0.061 4.061 20 C -0.121 4.121 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.132 4.132 24 C -0.134 4.134 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.321 0.679 36 H 0.258 0.742 37 H 0.117 0.883 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.130 0.870 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 -9.161 -4.588 10.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 H 0.062 0.938 4 C -0.097 4.097 5 C -0.165 4.165 6 C -0.229 4.229 7 C -0.207 4.207 8 N -0.299 5.299 9 C 0.140 3.860 10 H 0.021 0.979 11 C -0.522 4.522 12 H 0.067 0.933 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.770 3.230 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.196 1.196 19 C -0.062 4.062 20 C -0.139 4.139 21 C -0.146 4.146 22 C -0.161 4.161 23 C -0.150 4.150 24 C -0.153 4.153 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.067 0.933 37 H 0.135 0.865 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.148 0.852 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.171 -8.899 -4.689 10.126 hybrid contribution -0.111 1.466 0.423 1.530 sum -1.283 -7.432 -4.266 8.665 Atomic orbital electron populations 1.22395 0.97276 1.02003 1.01197 1.21347 0.91945 0.97218 0.91160 0.93842 1.21031 0.92441 1.00337 0.95876 1.22212 0.95929 1.04648 0.93756 1.23058 1.03097 0.94882 1.01906 1.22981 1.02106 0.93713 1.01908 1.60744 1.55752 1.09283 1.04162 1.18062 0.95514 0.88494 0.83958 0.97880 1.21149 0.94760 0.95824 1.40514 0.93335 1.25615 0.98744 0.98790 0.95133 1.70039 1.29936 1.13371 1.42197 0.85783 0.81094 0.78626 0.77528 1.20292 1.21340 1.19618 1.20641 0.93572 0.93842 0.98124 1.21033 0.99355 0.95265 0.98263 1.21382 0.99365 1.00464 0.93424 1.21267 0.97845 0.97160 0.99866 1.21273 1.00666 0.96137 0.96932 1.21051 1.00065 0.99102 0.95112 0.91371 0.95248 0.91372 0.91097 0.91230 0.89430 0.88274 0.90116 0.89070 0.87640 0.86159 0.93259 0.86506 0.84166 0.83813 0.85229 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.51 9.15 71.98 0.66 -4.85 16 2 C 0.09 3.48 2.38 44.92 0.11 3.58 16 3 H 0.04 1.98 7.64 -2.39 -0.02 1.96 16 4 C -0.06 -1.78 5.17 30.59 0.16 -1.62 16 5 C -0.15 -4.75 5.61 -10.79 -0.06 -4.81 16 6 C -0.19 -5.45 10.18 30.62 0.31 -5.14 16 7 C -0.17 -4.35 10.26 30.62 0.31 -4.04 16 8 N -0.67 -27.13 5.01 -477.18 -2.39 -29.52 16 9 C 0.25 12.06 2.10 43.42 0.09 12.15 16 10 H 0.00 0.19 6.15 -2.39 -0.01 0.17 16 11 C -0.48 -26.27 8.21 25.60 0.21 -26.06 16 12 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 13 C 0.02 0.91 5.45 84.65 0.46 1.37 16 14 N -0.92 -52.90 12.84 21.45 0.28 -52.63 16 15 Si 0.94 44.72 29.54 68.60 2.03 46.74 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 C -0.06 -2.75 4.65 -19.87 -0.09 -2.85 16 20 C -0.12 -4.83 9.07 22.27 0.20 -4.63 16 21 C -0.13 -4.27 10.05 22.27 0.22 -4.05 16 22 C -0.14 -4.56 10.05 22.27 0.22 -4.34 16 23 C -0.13 -4.79 10.05 22.27 0.22 -4.56 16 24 C -0.13 -5.96 9.67 22.27 0.22 -5.74 16 25 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 26 H 0.03 1.09 7.43 -2.39 -0.02 1.07 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 1.84 7.88 -2.39 -0.02 1.83 16 30 H 0.09 3.51 7.69 -2.39 -0.02 3.49 16 31 H 0.10 2.52 8.03 -2.39 -0.02 2.50 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.32 12.05 7.87 -89.70 -0.71 11.34 16 36 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.12 4.65 7.89 -2.91 -0.02 4.62 16 38 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 40 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 41 H 0.09 4.44 8.00 -2.91 -0.02 4.42 16 Total: -1.00 -60.07 338.45 3.44 -56.62 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.28 Total: 34.36 kcal Atomic # 6 Polarization: -58.83 SS G_CDS: 3.25 Total: -55.58 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -2.11 Total: -82.15 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -60.07 3.44 -56.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070102115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.513 kcal (2) G-P(sol) polarization free energy of solvation -60.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds