Wall clock time and date at job start Mon Mar 30 2020 07:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31043 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48507 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47116 * 299.99698 * 3 2 1 6 6 H 1.48489 * 109.47254 * 59.99998 * 3 2 1 7 7 C 1.39666 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00305 * 179.97438 * 7 2 1 9 9 C 1.41171 * 119.99648 * 0.02562 * 7 2 1 10 10 C 1.38895 * 126.31959 * 179.97438 * 9 7 2 11 11 N 1.37970 * 106.68506 * 179.74044 * 10 9 7 12 12 C 1.38359 * 138.79498 * 179.42601 * 11 10 9 13 13 C 1.47238 * 122.11192 * 0.80966 * 12 11 10 14 14 C 1.36217 * 125.95697 * 184.73504 * 13 12 11 15 15 C 1.40960 * 106.72598 * 180.02562 * 14 13 12 16 16 C 1.34697 * 107.06695 * 359.97438 * 15 14 13 17 17 O 1.34460 * 108.71420 * 0.02562 * 16 15 14 18 18 C 1.32641 * 115.78155 * 180.53682 * 12 11 10 19 19 S 1.75685 * 109.86596 * 0.25449 * 18 12 11 20 20 C 1.35562 * 107.29177 * 0.38138 * 11 10 9 21 21 N 1.32360 * 109.60743 * 359.60890 * 20 11 10 22 22 H 0.97005 * 119.99335 * 359.97438 * 1 2 3 23 23 H 1.08004 * 126.66082 * 359.96216 * 10 9 7 24 24 H 1.07996 * 126.63423 * 0.04265 * 14 13 12 25 25 H 1.08002 * 126.46645 * 180.02562 * 15 14 13 26 26 H 1.08001 * 125.63938 * 180.02562 * 16 15 14 27 27 H 1.07997 * 125.06945 * 180.22844 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 3.7045 1.3463 0.0006 5 1 1.8857 2.3964 -1.2126 6 1 1.8857 2.3964 1.2124 7 6 2.0087 -1.2095 0.0005 8 1 3.0887 -1.2096 0.0001 9 6 1.3028 -2.4321 0.0005 10 6 1.8606 -3.7041 0.0005 11 7 0.8093 -4.5976 0.0065 12 6 0.6063 -5.9662 0.0007 13 6 1.7251 -6.9234 0.0009 14 6 1.6188 -8.2780 -0.0956 15 6 2.9308 -8.7918 -0.0542 16 6 3.7638 -7.7399 0.0634 17 8 3.0325 -6.6120 0.0967 18 6 -0.6598 -6.3617 0.0007 19 16 -1.7222 -4.9625 0.0010 20 6 -0.3360 -3.8723 0.0013 21 7 -0.0441 -2.5813 0.0010 22 1 -0.4849 0.8401 0.0004 23 1 2.9130 -3.9468 0.0000 24 1 0.7060 -8.8479 -0.1864 25 1 3.2146 -9.8325 -0.1076 26 1 4.8410 -7.7935 0.1214 27 1 -0.9885 -7.3904 0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075395750.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:18 Heat of formation + Delta-G solvation = 109.088089 kcal Electronic energy + Delta-G solvation = -16171.544167 eV Core-core repulsion = 13410.310681 eV Total energy + Delta-G solvation = -2761.233486 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 260.036 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.46901 -40.77689 -35.81552 -33.29902 -32.81913 -30.11934 -29.02623 -28.17187 -25.11951 -23.61454 -21.57373 -20.87974 -20.25477 -19.28670 -17.66692 -16.76654 -16.58435 -16.02833 -15.13334 -14.75269 -14.60135 -13.89075 -13.33781 -13.14398 -12.85284 -12.70689 -12.49399 -12.11030 -11.39207 -11.07553 -10.97177 -10.75188 -10.53181 -10.08093 -9.94091 -9.48466 -9.31673 -8.49035 -8.41859 -7.53674 -6.59131 -6.44811 -4.27528 1.01742 1.80720 2.18881 2.25644 2.66941 3.08348 3.13415 3.17086 3.21908 3.51172 3.62781 4.07475 4.32318 4.70607 4.97075 5.06587 5.52226 5.56439 5.72469 5.77827 5.81205 6.01369 6.25547 6.46368 6.91362 7.10344 7.16841 7.37036 7.55147 8.06086 8.36121 8.82049 8.98477 9.53679 10.48155 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.026087 B = 0.006236 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.084955 B = 4489.086273 C = 5551.055550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.440 4.440 8 H 0.086 0.914 9 C 0.228 3.772 10 C -0.224 4.224 11 N -0.395 5.395 12 C 0.168 3.832 13 C 0.053 3.947 14 C -0.188 4.188 15 C -0.213 4.213 16 C -0.035 4.035 17 O -0.162 6.162 18 C -0.262 4.262 19 S 0.156 5.844 20 C 0.112 3.888 21 N -0.411 5.411 22 H 0.273 0.727 23 H 0.153 0.847 24 H 0.153 0.847 25 H 0.151 0.849 26 H 0.204 0.796 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 -13.501 -0.045 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.149 4.149 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.473 4.473 8 H 0.104 0.896 9 C 0.104 3.896 10 C -0.351 4.351 11 N -0.078 5.078 12 C 0.052 3.948 13 C 0.000 4.000 14 C -0.209 4.209 15 C -0.232 4.232 16 C -0.104 4.104 17 O -0.057 6.057 18 C -0.403 4.403 19 S 0.407 5.593 20 C -0.253 4.253 21 N -0.138 5.138 22 H 0.083 0.917 23 H 0.170 0.830 24 H 0.171 0.829 25 H 0.169 0.831 26 H 0.221 0.779 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.086 -12.122 -0.010 12.123 hybrid contribution 2.544 -0.399 -0.014 2.575 sum 2.458 -12.521 -0.024 12.760 Atomic orbital electron populations 1.70105 1.06900 1.27808 1.33480 1.25896 0.94904 1.00817 0.93250 0.86223 0.80590 0.81291 0.78322 1.18590 1.20044 1.20052 1.18620 0.93801 0.87853 1.47051 0.89613 1.18445 0.86523 0.91212 0.93419 1.22584 0.90341 0.87084 1.35072 1.43215 1.09072 1.02258 1.53274 1.16310 0.90729 0.81330 1.06386 1.19820 0.81021 0.92356 1.06776 1.21703 0.98942 0.91987 1.08228 1.21696 0.92523 1.00147 1.08879 1.24193 0.97710 0.82850 1.05629 1.84250 1.16659 1.34431 1.70326 1.24437 0.93301 1.03848 1.18673 1.83915 1.01940 0.90554 1.82925 1.26303 0.89964 0.94023 1.14989 1.71753 1.15341 1.06969 1.19732 0.91686 0.82964 0.82906 0.83105 0.77941 0.80137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.50 11.93 55.53 0.66 -20.83 15 2 C 0.07 1.94 5.49 -17.36 -0.10 1.85 15 3 Si 0.91 19.62 29.56 -169.99 -5.02 14.59 15 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.28 -5.83 7.11 56.52 0.40 -5.42 15 7 C -0.44 -12.39 9.37 -37.94 -0.36 -12.74 15 8 H 0.09 2.25 7.84 -52.49 -0.41 1.84 15 9 C 0.23 6.60 6.67 -84.88 -0.57 6.03 15 10 C -0.22 -5.90 11.67 -14.54 -0.17 -6.07 15 11 N -0.40 -9.59 3.16 -59.01 -0.19 -9.78 15 12 C 0.17 3.32 6.71 -83.16 -0.56 2.76 15 13 C 0.05 0.93 7.15 -36.65 -0.26 0.67 15 14 C -0.19 -2.53 10.35 -39.28 -0.41 -2.94 15 15 C -0.21 -2.49 10.88 -39.81 -0.43 -2.92 15 16 C -0.03 -0.44 12.08 29.48 0.36 -0.08 15 17 O -0.16 -2.82 10.13 4.09 0.04 -2.78 15 18 C -0.26 -4.33 10.55 28.84 0.30 -4.03 15 19 S 0.16 2.91 23.35 -107.50 -2.51 0.40 15 20 C 0.11 2.84 8.87 -88.33 -0.78 2.05 15 21 N -0.41 -12.01 9.57 -10.94 -0.10 -12.12 15 22 H 0.27 7.00 8.30 -40.82 -0.34 6.66 15 23 H 0.15 3.73 7.86 -52.48 -0.41 3.32 15 24 H 0.15 1.61 7.58 -52.49 -0.40 1.22 15 25 H 0.15 1.26 8.06 -52.49 -0.42 0.84 15 26 H 0.20 1.67 8.06 -52.49 -0.42 1.25 15 27 H 0.18 2.16 7.48 -52.49 -0.39 1.76 15 LS Contribution 263.98 15.07 3.98 3.98 Total: -1.00 -33.30 263.98 -7.71 -41.00 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -1.59 Total: 0.96 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.97 Total: -15.42 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.37 Total: -42.73 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.51 Total: 0.40 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.30 -7.71 -41.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075395750.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.091 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds