Wall clock time and date at job start Mon Mar 30 2020 07:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31043 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48507 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47116 * 299.99698 * 3 2 1 6 6 H 1.48489 * 109.47254 * 59.99998 * 3 2 1 7 7 C 1.39666 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00305 * 179.97438 * 7 2 1 9 9 C 1.41171 * 119.99648 * 0.02562 * 7 2 1 10 10 C 1.38895 * 126.31959 * 179.97438 * 9 7 2 11 11 N 1.37970 * 106.68506 * 179.74044 * 10 9 7 12 12 C 1.38359 * 138.79498 * 179.42601 * 11 10 9 13 13 C 1.47238 * 122.11192 * 0.80966 * 12 11 10 14 14 C 1.36217 * 125.95697 * 184.73504 * 13 12 11 15 15 C 1.40960 * 106.72598 * 180.02562 * 14 13 12 16 16 C 1.34697 * 107.06695 * 359.97438 * 15 14 13 17 17 O 1.34460 * 108.71420 * 0.02562 * 16 15 14 18 18 C 1.32641 * 115.78155 * 180.53682 * 12 11 10 19 19 S 1.75685 * 109.86596 * 0.25449 * 18 12 11 20 20 C 1.35562 * 107.29177 * 0.38138 * 11 10 9 21 21 N 1.32360 * 109.60743 * 359.60890 * 20 11 10 22 22 H 0.97005 * 119.99335 * 359.97438 * 1 2 3 23 23 H 1.08004 * 126.66082 * 359.96216 * 10 9 7 24 24 H 1.07996 * 126.63423 * 0.04265 * 14 13 12 25 25 H 1.08002 * 126.46645 * 180.02562 * 15 14 13 26 26 H 1.08001 * 125.63938 * 180.02562 * 16 15 14 27 27 H 1.07997 * 125.06945 * 180.22844 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 3.7045 1.3463 0.0006 5 1 1.8857 2.3964 -1.2126 6 1 1.8857 2.3964 1.2124 7 6 2.0087 -1.2095 0.0005 8 1 3.0887 -1.2096 0.0001 9 6 1.3028 -2.4321 0.0005 10 6 1.8606 -3.7041 0.0005 11 7 0.8093 -4.5976 0.0065 12 6 0.6063 -5.9662 0.0007 13 6 1.7251 -6.9234 0.0009 14 6 1.6188 -8.2780 -0.0956 15 6 2.9308 -8.7918 -0.0542 16 6 3.7638 -7.7399 0.0634 17 8 3.0325 -6.6120 0.0967 18 6 -0.6598 -6.3617 0.0007 19 16 -1.7222 -4.9625 0.0010 20 6 -0.3360 -3.8723 0.0013 21 7 -0.0441 -2.5813 0.0010 22 1 -0.4849 0.8401 0.0004 23 1 2.9130 -3.9468 0.0000 24 1 0.7060 -8.8479 -0.1864 25 1 3.2146 -9.8325 -0.1076 26 1 4.8410 -7.7935 0.1214 27 1 -0.9885 -7.3904 0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075395750.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:18 Heat of formation + Delta-G solvation = 87.856362 kcal Electronic energy + Delta-G solvation = -16172.464843 eV Core-core repulsion = 13410.310681 eV Total energy + Delta-G solvation = -2762.154162 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 260.036 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.59764 -42.55888 -37.50240 -35.11143 -34.02426 -31.65247 -30.83759 -29.70806 -27.01737 -25.03397 -22.67155 -22.37451 -22.10602 -20.78085 -19.19668 -18.57179 -18.02997 -17.26010 -16.79786 -16.33455 -16.28770 -15.43884 -15.00677 -14.58630 -14.39999 -13.82740 -13.63805 -13.47774 -13.15438 -12.86973 -12.62067 -12.58294 -12.25616 -11.85817 -11.21558 -11.17179 -10.91217 -10.40524 -9.89591 -9.30905 -8.40766 -8.22971 -6.36418 -0.27338 0.14838 0.75012 0.80570 1.38008 1.39684 1.51573 1.56848 1.92597 2.00159 2.07884 2.28090 2.33802 3.49878 3.53192 3.93433 4.03757 4.12315 4.45085 4.54305 4.75843 4.89234 4.93963 5.06066 5.23172 5.44378 5.54553 5.59938 6.01812 6.14165 6.46462 6.83464 6.96296 7.57596 8.55525 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.026087 B = 0.006236 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.084955 B = 4489.086273 C = 5551.055550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.024 3.976 3 Si 0.995 3.005 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.482 4.482 8 H 0.088 0.912 9 C 0.190 3.810 10 C -0.229 4.229 11 N -0.402 5.402 12 C 0.132 3.868 13 C -0.004 4.004 14 C -0.157 4.157 15 C -0.211 4.211 16 C -0.035 4.035 17 O -0.202 6.202 18 C -0.222 4.222 19 S 0.207 5.793 20 C 0.079 3.921 21 N -0.469 5.469 22 H 0.277 0.723 23 H 0.157 0.843 24 H 0.188 0.812 25 H 0.191 0.809 26 H 0.239 0.761 27 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 -16.638 -0.112 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.192 4.192 3 Si 0.816 3.184 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.516 4.516 8 H 0.106 0.894 9 C 0.065 3.935 10 C -0.357 4.357 11 N -0.085 5.085 12 C 0.020 3.980 13 C -0.056 4.056 14 C -0.178 4.178 15 C -0.229 4.229 16 C -0.103 4.103 17 O -0.099 6.099 18 C -0.361 4.361 19 S 0.457 5.543 20 C -0.285 4.285 21 N -0.197 5.197 22 H 0.087 0.913 23 H 0.175 0.825 24 H 0.206 0.794 25 H 0.208 0.792 26 H 0.255 0.745 27 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 0.043 -15.358 -0.077 15.359 hybrid contribution 2.472 0.142 0.006 2.476 sum 2.515 -15.216 -0.071 15.423 Atomic orbital electron populations 1.70238 1.08791 1.29006 1.35018 1.26905 0.95775 1.04550 0.92019 0.84977 0.79156 0.75673 0.78644 1.17706 1.19156 1.19178 1.18970 0.94169 0.89014 1.49461 0.89377 1.18925 0.87391 0.92514 0.94646 1.22603 0.91111 0.87312 1.34682 1.43339 1.08010 1.04131 1.52980 1.16980 0.93266 0.79761 1.08022 1.19882 0.80744 0.93250 1.11747 1.22238 1.01132 0.90242 1.04169 1.22193 0.91357 1.01712 1.07676 1.25149 0.99390 0.82049 1.03719 1.84214 1.17341 1.36948 1.71412 1.25224 0.91555 1.05559 1.13751 1.83696 0.99403 0.89168 1.82041 1.27326 0.92935 0.94130 1.14096 1.71608 1.15652 1.09540 1.22906 0.91284 0.82545 0.79449 0.79189 0.74498 0.74427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.12 11.93 21.78 0.26 -47.86 15 2 C 0.02 1.34 5.49 85.16 0.47 1.80 15 3 Si 1.00 41.89 29.56 68.60 2.03 43.92 15 4 H -0.25 -10.16 7.11 99.48 0.71 -9.45 15 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 15 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 7 C -0.48 -28.96 9.37 23.34 0.22 -28.74 15 8 H 0.09 4.95 7.84 -2.91 -0.02 4.93 15 9 C 0.19 11.76 6.67 39.45 0.26 12.02 15 10 C -0.23 -12.80 11.67 83.88 0.98 -11.82 15 11 N -0.40 -20.08 3.16 -340.59 -1.08 -21.16 15 12 C 0.13 5.06 6.71 39.32 0.26 5.33 15 13 C 0.00 -0.15 7.15 24.17 0.17 0.03 15 14 C -0.16 -3.55 10.35 22.47 0.23 -3.32 15 15 C -0.21 -3.95 10.88 22.12 0.24 -3.71 15 16 C -0.04 -0.79 12.08 67.01 0.81 0.02 15 17 O -0.20 -6.95 10.13 -8.28 -0.08 -7.04 15 18 C -0.22 -6.60 10.55 66.66 0.70 -5.89 15 19 S 0.21 7.44 23.35 -56.49 -1.32 6.12 15 20 C 0.08 4.16 8.87 179.55 1.59 5.76 15 21 N -0.47 -29.04 9.57 -188.53 -1.80 -30.84 15 22 H 0.28 14.97 8.30 -92.70 -0.77 14.20 15 23 H 0.16 8.22 7.86 -2.91 -0.02 8.20 15 24 H 0.19 2.73 7.58 -2.91 -0.02 2.71 15 25 H 0.19 2.01 8.06 -2.91 -0.02 1.98 15 26 H 0.24 3.13 8.06 -2.91 -0.02 3.11 15 27 H 0.24 4.12 7.48 -2.91 -0.02 4.10 15 Total: -1.00 -80.85 263.98 5.16 -75.69 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.21 Total: 9.71 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 5.94 Total: -28.53 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -2.62 Total: -99.87 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.08 Total: -7.04 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 7.44 SS G_CDS: -1.32 Total: 6.12 kcal Total: -80.85 5.16 -75.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075395750.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.542 kcal (2) G-P(sol) polarization free energy of solvation -80.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds